data_3HAQ
#
_model_server_result.job_id            tWpOZ8ojqiNZjZxbWKpamQ 
_model_server_result.datetime_utc      '2024-11-23 01:02:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3haq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    3HAQ 
#
_exptl.entry_id    3HAQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HAQ 
_cell.length_a            44.998 
_cell.length_b            102.211 
_cell.length_c            127.97 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HAQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             216 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              216 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.261 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 513 n n 
C1 C6 RET sing 514 n n 
C1 C16 RET sing 515 n n 
C1 C17 RET sing 516 n n 
C2 C3 RET sing 517 n n 
C2 H21 RET sing 518 n n 
C2 H22 RET sing 519 n n 
C3 C4 RET sing 520 n n 
C3 H31 RET sing 521 n n 
C3 H32 RET sing 522 n n 
C4 C5 RET sing 523 n n 
C4 H41 RET sing 524 n n 
C4 H42 RET sing 525 n n 
C5 C6 RET doub 526 n n 
C5 C18 RET sing 527 n n 
C6 C7 RET sing 528 n n 
C7 C8 RET doub 529 e n 
C7 H7 RET sing 530 n n 
C8 C9 RET sing 531 n n 
C8 H8 RET sing 532 n n 
C9 C10 RET doub 533 e n 
C9 C19 RET sing 534 n n 
C10 C11 RET sing 535 n n 
C10 H10 RET sing 536 n n 
C11 C12 RET doub 537 e n 
C11 H11 RET sing 538 n n 
C12 C13 RET sing 539 n n 
C12 H12 RET sing 540 n n 
C13 C14 RET doub 541 e n 
C13 C20 RET sing 542 n n 
C14 C15 RET sing 543 n n 
C14 H14 RET sing 544 n n 
C15 O1 RET doub 545 n n 
C15 H15 RET sing 546 n n 
C16 H161 RET sing 547 n n 
C16 H162 RET sing 548 n n 
C16 H163 RET sing 549 n n 
C17 H171 RET sing 550 n n 
C17 H172 RET sing 551 n n 
C17 H173 RET sing 552 n n 
C18 H181 RET sing 553 n n 
C18 H182 RET sing 554 n n 
C18 H183 RET sing 555 n n 
C19 H191 RET sing 556 n n 
C19 H192 RET sing 557 n n 
C19 H193 RET sing 558 n n 
C20 H201 RET sing 559 n n 
C20 H202 RET sing 560 n n 
C20 H203 RET sing 561 n n 
#
_atom_sites.entry_id                     3HAQ 
_atom_sites.fract_transf_matrix[1][1]    0.022223 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009784 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007814 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 301 RET RET . 
C 3 HP6 A 1 401 401 HP6 HP6 . 
D 4 DD9 A 1 402 402 DD9 DD9 . 
E 4 DD9 A 1 403 403 DD9 DD9 . 
F 5 D12 A 1 404 404 D12 D12 . 
G 4 DD9 A 1 405 405 DD9 DD9 . 
H 5 D12 A 1 406 406 D12 D12 . 
I 6 D10 A 1 409 409 D10 D10 . 
J 7 R16 A 1 411 411 R16 R16 . 
K 8 CPS A 1 501 501 CPS CPS . 
L 9 HOH A 1 250 1 HOH HOH . 
L 9 HOH A 2 251 2 HOH HOH . 
L 9 HOH A 3 252 3 HOH HOH . 
L 9 HOH A 4 253 4 HOH HOH . 
L 9 HOH A 5 254 5 HOH HOH . 
L 9 HOH A 6 255 6 HOH HOH . 
L 9 HOH A 7 256 7 HOH HOH . 
L 9 HOH A 8 257 8 HOH HOH . 
L 9 HOH A 9 258 9 HOH HOH . 
L 9 HOH A 10 259 10 HOH HOH . 
L 9 HOH A 11 260 11 HOH HOH . 
L 9 HOH A 12 261 12 HOH HOH . 
L 9 HOH A 13 262 13 HOH HOH . 
L 9 HOH A 14 263 14 HOH HOH . 
L 9 HOH A 15 264 15 HOH HOH . 
L 9 HOH A 16 265 16 HOH HOH . 
L 9 HOH A 17 266 17 HOH HOH . 
L 9 HOH A 18 267 18 HOH HOH . 
L 9 HOH A 19 268 19 HOH HOH . 
L 9 HOH A 20 269 20 HOH HOH . 
L 9 HOH A 21 270 21 HOH HOH . 
L 9 HOH A 22 271 22 HOH HOH . 
L 9 HOH A 23 272 23 HOH HOH . 
L 9 HOH A 24 273 24 HOH HOH . 
L 9 HOH A 25 274 25 HOH HOH . 
L 9 HOH A 26 275 26 HOH HOH . 
L 9 HOH A 27 276 27 HOH HOH . 
L 9 HOH A 28 277 28 HOH HOH . 
L 9 HOH A 29 278 29 HOH HOH . 
L 9 HOH A 30 279 30 HOH HOH . 
L 9 HOH A 31 280 31 HOH HOH . 
L 9 HOH A 32 281 32 HOH HOH . 
L 9 HOH A 33 282 33 HOH HOH . 
L 9 HOH A 34 283 34 HOH HOH . 
L 9 HOH A 35 284 35 HOH HOH . 
L 9 HOH A 36 285 36 HOH HOH . 
L 9 HOH A 37 286 37 HOH HOH . 
L 9 HOH A 38 287 38 HOH HOH . 
L 9 HOH A 39 288 39 HOH HOH . 
L 9 HOH A 40 289 40 HOH HOH . 
L 9 HOH A 41 290 41 HOH HOH . 
L 9 HOH A 42 291 42 HOH HOH . 
L 9 HOH A 43 292 43 HOH HOH . 
L 9 HOH A 44 293 44 HOH HOH . 
L 9 HOH A 45 294 45 HOH HOH . 
L 9 HOH A 46 295 46 HOH HOH . 
L 9 HOH A 47 296 47 HOH HOH . 
L 9 HOH A 48 297 48 HOH HOH . 
L 9 HOH A 49 298 49 HOH HOH . 
L 9 HOH A 50 299 50 HOH HOH . 
L 9 HOH A 51 300 52 HOH HOH . 
L 9 HOH A 52 302 53 HOH HOH . 
L 9 HOH A 53 303 54 HOH HOH . 
L 9 HOH A 54 304 56 HOH HOH . 
L 9 HOH A 55 305 57 HOH HOH . 
L 9 HOH A 56 306 58 HOH HOH . 
L 9 HOH A 57 307 59 HOH HOH . 
L 9 HOH A 58 308 60 HOH HOH . 
L 9 HOH A 59 309 61 HOH HOH . 
L 9 HOH A 60 310 62 HOH HOH . 
L 9 HOH A 61 311 64 HOH HOH . 
L 9 HOH A 62 312 65 HOH HOH . 
L 9 HOH A 63 313 68 HOH HOH . 
L 9 HOH A 64 314 70 HOH HOH . 
L 9 HOH A 65 315 71 HOH HOH . 
L 9 HOH A 66 316 72 HOH HOH . 
L 9 HOH A 67 317 77 HOH HOH . 
L 9 HOH A 68 318 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . B 2 -26.355 -10.292 -3.086 1 13.27 ? C1 RET 301 A 1 
HETATM 2 C C2 RET . . . B 2 -26.535 -9.504 -4.364 1 14.01 ? C2 RET 301 A 1 
HETATM 3 C C3 RET . . . B 2 -27.486 -8.321 -4.227 1 11.66 ? C3 RET 301 A 1 
HETATM 4 C C4 RET . . . B 2 -28.069 -8.024 -2.85 1 10.85 ? C4 RET 301 A 1 
HETATM 5 C C5 RET . . . B 2 -27.262 -8.483 -1.649 1 11.2 ? C5 RET 301 A 1 
HETATM 6 C C6 RET . . . B 2 -26.414 -9.545 -1.722 1 12.67 ? C6 RET 301 A 1 
HETATM 7 C C7 RET . . . B 2 -25.659 -9.908 -0.504 1 11.27 ? C7 RET 301 A 1 
HETATM 8 C C8 RET . . . B 2 -25.022 -11.055 -0.292 1 11.18 ? C8 RET 301 A 1 
HETATM 9 C C9 RET . . . B 2 -24.261 -11.234 0.968 1 11.24 ? C9 RET 301 A 1 
HETATM 10 C C10 RET . . . B 2 -23.294 -12.146 0.916 1 9.33 ? C10 RET 301 A 1 
HETATM 11 C C11 RET . . . B 2 -22.441 -12.459 2.038 1 11.63 ? C11 RET 301 A 1 
HETATM 12 C C12 RET . . . B 2 -21.693 -13.511 1.753 1 15.72 ? C12 RET 301 A 1 
HETATM 13 C C13 RET . . . B 2 -20.749 -14.18 2.668 1 17.75 ? C13 RET 301 A 1 
HETATM 14 C C14 RET . . . B 2 -20.103 -15.233 2.143 1 18.8 ? C14 RET 301 A 1 
HETATM 15 C C15 RET . . . B 2 -19.169 -16.036 2.9 1 16.47 ? C15 RET 301 A 1 
HETATM 16 C C16 RET . . . B 2 -26.224 -11.809 -3.161 1 14.05 ? C16 RET 301 A 1 
HETATM 17 C C17 RET . . . B 2 -24.813 -10.24 -3.285 1 9.48 ? C17 RET 301 A 1 
HETATM 18 C C18 RET . . . B 2 -27.52 -7.685 -0.395 1 8.33 ? C18 RET 301 A 1 
HETATM 19 C C19 RET . . . B 2 -24.483 -10.392 2.217 1 7.05 ? C19 RET 301 A 1 
HETATM 20 C C20 RET . . . B 2 -20.584 -13.79 4.1 1 10.39 ? C20 RET 301 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           226 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#