data_3HAQ # _model_server_result.job_id RvtiVonPvQhETpNpcsrKPA _model_server_result.datetime_utc '2024-11-13 05:11:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3haq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3HAQ # _exptl.entry_id 3HAQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HAQ _cell.length_a 44.998 _cell.length_b 102.211 _cell.length_c 127.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HAQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.261 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 513 n n C1 C6 RET sing 514 n n C1 C16 RET sing 515 n n C1 C17 RET sing 516 n n C2 C3 RET sing 517 n n C2 H21 RET sing 518 n n C2 H22 RET sing 519 n n C3 C4 RET sing 520 n n C3 H31 RET sing 521 n n C3 H32 RET sing 522 n n C4 C5 RET sing 523 n n C4 H41 RET sing 524 n n C4 H42 RET sing 525 n n C5 C6 RET doub 526 n n C5 C18 RET sing 527 n n C6 C7 RET sing 528 n n C7 C8 RET doub 529 e n C7 H7 RET sing 530 n n C8 C9 RET sing 531 n n C8 H8 RET sing 532 n n C9 C10 RET doub 533 e n C9 C19 RET sing 534 n n C10 C11 RET sing 535 n n C10 H10 RET sing 536 n n C11 C12 RET doub 537 e n C11 H11 RET sing 538 n n C12 C13 RET sing 539 n n C12 H12 RET sing 540 n n C13 C14 RET doub 541 e n C13 C20 RET sing 542 n n C14 C15 RET sing 543 n n C14 H14 RET sing 544 n n C15 O1 RET doub 545 n n C15 H15 RET sing 546 n n C16 H161 RET sing 547 n n C16 H162 RET sing 548 n n C16 H163 RET sing 549 n n C17 H171 RET sing 550 n n C17 H172 RET sing 551 n n C17 H173 RET sing 552 n n C18 H181 RET sing 553 n n C18 H182 RET sing 554 n n C18 H183 RET sing 555 n n C19 H191 RET sing 556 n n C19 H192 RET sing 557 n n C19 H193 RET sing 558 n n C20 H201 RET sing 559 n n C20 H202 RET sing 560 n n C20 H203 RET sing 561 n n # _atom_sites.entry_id 3HAQ _atom_sites.fract_transf_matrix[1][1] 0.022223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 HP6 A 1 401 401 HP6 HP6 . D 4 DD9 A 1 402 402 DD9 DD9 . E 4 DD9 A 1 403 403 DD9 DD9 . F 5 D12 A 1 404 404 D12 D12 . G 4 DD9 A 1 405 405 DD9 DD9 . H 5 D12 A 1 406 406 D12 D12 . I 6 D10 A 1 409 409 D10 D10 . J 7 R16 A 1 411 411 R16 R16 . K 8 CPS A 1 501 501 CPS CPS . L 9 HOH A 1 250 1 HOH HOH . L 9 HOH A 2 251 2 HOH HOH . L 9 HOH A 3 252 3 HOH HOH . L 9 HOH A 4 253 4 HOH HOH . L 9 HOH A 5 254 5 HOH HOH . L 9 HOH A 6 255 6 HOH HOH . L 9 HOH A 7 256 7 HOH HOH . L 9 HOH A 8 257 8 HOH HOH . L 9 HOH A 9 258 9 HOH HOH . L 9 HOH A 10 259 10 HOH HOH . L 9 HOH A 11 260 11 HOH HOH . L 9 HOH A 12 261 12 HOH HOH . L 9 HOH A 13 262 13 HOH HOH . L 9 HOH A 14 263 14 HOH HOH . L 9 HOH A 15 264 15 HOH HOH . L 9 HOH A 16 265 16 HOH HOH . L 9 HOH A 17 266 17 HOH HOH . L 9 HOH A 18 267 18 HOH HOH . L 9 HOH A 19 268 19 HOH HOH . L 9 HOH A 20 269 20 HOH HOH . L 9 HOH A 21 270 21 HOH HOH . L 9 HOH A 22 271 22 HOH HOH . L 9 HOH A 23 272 23 HOH HOH . L 9 HOH A 24 273 24 HOH HOH . L 9 HOH A 25 274 25 HOH HOH . L 9 HOH A 26 275 26 HOH HOH . L 9 HOH A 27 276 27 HOH HOH . L 9 HOH A 28 277 28 HOH HOH . L 9 HOH A 29 278 29 HOH HOH . L 9 HOH A 30 279 30 HOH HOH . L 9 HOH A 31 280 31 HOH HOH . L 9 HOH A 32 281 32 HOH HOH . L 9 HOH A 33 282 33 HOH HOH . L 9 HOH A 34 283 34 HOH HOH . L 9 HOH A 35 284 35 HOH HOH . L 9 HOH A 36 285 36 HOH HOH . L 9 HOH A 37 286 37 HOH HOH . L 9 HOH A 38 287 38 HOH HOH . L 9 HOH A 39 288 39 HOH HOH . L 9 HOH A 40 289 40 HOH HOH . L 9 HOH A 41 290 41 HOH HOH . L 9 HOH A 42 291 42 HOH HOH . L 9 HOH A 43 292 43 HOH HOH . L 9 HOH A 44 293 44 HOH HOH . L 9 HOH A 45 294 45 HOH HOH . L 9 HOH A 46 295 46 HOH HOH . L 9 HOH A 47 296 47 HOH HOH . L 9 HOH A 48 297 48 HOH HOH . L 9 HOH A 49 298 49 HOH HOH . L 9 HOH A 50 299 50 HOH HOH . L 9 HOH A 51 300 52 HOH HOH . L 9 HOH A 52 302 53 HOH HOH . L 9 HOH A 53 303 54 HOH HOH . L 9 HOH A 54 304 56 HOH HOH . L 9 HOH A 55 305 57 HOH HOH . L 9 HOH A 56 306 58 HOH HOH . L 9 HOH A 57 307 59 HOH HOH . L 9 HOH A 58 308 60 HOH HOH . L 9 HOH A 59 309 61 HOH HOH . L 9 HOH A 60 310 62 HOH HOH . L 9 HOH A 61 311 64 HOH HOH . L 9 HOH A 62 312 65 HOH HOH . L 9 HOH A 63 313 68 HOH HOH . L 9 HOH A 64 314 70 HOH HOH . L 9 HOH A 65 315 71 HOH HOH . L 9 HOH A 66 316 72 HOH HOH . L 9 HOH A 67 317 77 HOH HOH . L 9 HOH A 68 318 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 -26.355 -10.292 -3.086 1 13.27 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 -26.535 -9.504 -4.364 1 14.01 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 -27.486 -8.321 -4.227 1 11.66 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 -28.069 -8.024 -2.85 1 10.85 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 -27.262 -8.483 -1.649 1 11.2 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 -26.414 -9.545 -1.722 1 12.67 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 -25.659 -9.908 -0.504 1 11.27 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 -25.022 -11.055 -0.292 1 11.18 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 -24.261 -11.234 0.968 1 11.24 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 -23.294 -12.146 0.916 1 9.33 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 -22.441 -12.459 2.038 1 11.63 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 -21.693 -13.511 1.753 1 15.72 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 -20.749 -14.18 2.668 1 17.75 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 -20.103 -15.233 2.143 1 18.8 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 -19.169 -16.036 2.9 1 16.47 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 -26.224 -11.809 -3.161 1 14.05 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 -24.813 -10.24 -3.285 1 9.48 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 -27.52 -7.685 -0.395 1 8.33 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 -24.483 -10.392 2.217 1 7.05 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 -20.584 -13.79 4.1 1 10.39 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #