data_3HAQ
#
_model_server_result.job_id            XQsSfVdb7YuwzLDLdWBKNA 
_model_server_result.datetime_utc      '2024-11-13 05:25:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3haq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    3HAQ 
#
_exptl.entry_id    3HAQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              128.255 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            nonane 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HAQ 
_cell.length_a            44.998 
_cell.length_b            102.211 
_cell.length_c            127.97 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HAQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 G N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             216 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              216 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.261 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C9 H20' 
_chem_comp.formula_weight    128.255 
_chem_comp.id                DD9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              nonane 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 DD9 sing 241 n n 
C1 H1 DD9 sing 242 n n 
C1 H1A DD9 sing 243 n n 
C1 H1B DD9 sing 244 n n 
C3 C2 DD9 sing 245 n n 
C2 H2 DD9 sing 246 n n 
C2 H2A DD9 sing 247 n n 
C4 C3 DD9 sing 248 n n 
C3 H3 DD9 sing 249 n n 
C3 H3A DD9 sing 250 n n 
C5 C4 DD9 sing 251 n n 
C4 H4 DD9 sing 252 n n 
C4 H4A DD9 sing 253 n n 
C6 C5 DD9 sing 254 n n 
C5 H5 DD9 sing 255 n n 
C5 H5A DD9 sing 256 n n 
C7 C6 DD9 sing 257 n n 
C6 H6 DD9 sing 258 n n 
C6 H6A DD9 sing 259 n n 
C8 C7 DD9 sing 260 n n 
C7 H7 DD9 sing 261 n n 
C7 H7A DD9 sing 262 n n 
C9 C8 DD9 sing 263 n n 
C8 H8 DD9 sing 264 n n 
C8 H8A DD9 sing 265 n n 
C9 H9 DD9 sing 266 n n 
C9 H9A DD9 sing 267 n n 
C9 H9B DD9 sing 268 n n 
#
_atom_sites.entry_id                     3HAQ 
_atom_sites.fract_transf_matrix[1][1]    0.022223 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009784 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007814 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 301 RET RET . 
C 3 HP6 A 1 401 401 HP6 HP6 . 
D 4 DD9 A 1 402 402 DD9 DD9 . 
E 4 DD9 A 1 403 403 DD9 DD9 . 
F 5 D12 A 1 404 404 D12 D12 . 
G 4 DD9 A 1 405 405 DD9 DD9 . 
H 5 D12 A 1 406 406 D12 D12 . 
I 6 D10 A 1 409 409 D10 D10 . 
J 7 R16 A 1 411 411 R16 R16 . 
K 8 CPS A 1 501 501 CPS CPS . 
L 9 HOH A 1 250 1 HOH HOH . 
L 9 HOH A 2 251 2 HOH HOH . 
L 9 HOH A 3 252 3 HOH HOH . 
L 9 HOH A 4 253 4 HOH HOH . 
L 9 HOH A 5 254 5 HOH HOH . 
L 9 HOH A 6 255 6 HOH HOH . 
L 9 HOH A 7 256 7 HOH HOH . 
L 9 HOH A 8 257 8 HOH HOH . 
L 9 HOH A 9 258 9 HOH HOH . 
L 9 HOH A 10 259 10 HOH HOH . 
L 9 HOH A 11 260 11 HOH HOH . 
L 9 HOH A 12 261 12 HOH HOH . 
L 9 HOH A 13 262 13 HOH HOH . 
L 9 HOH A 14 263 14 HOH HOH . 
L 9 HOH A 15 264 15 HOH HOH . 
L 9 HOH A 16 265 16 HOH HOH . 
L 9 HOH A 17 266 17 HOH HOH . 
L 9 HOH A 18 267 18 HOH HOH . 
L 9 HOH A 19 268 19 HOH HOH . 
L 9 HOH A 20 269 20 HOH HOH . 
L 9 HOH A 21 270 21 HOH HOH . 
L 9 HOH A 22 271 22 HOH HOH . 
L 9 HOH A 23 272 23 HOH HOH . 
L 9 HOH A 24 273 24 HOH HOH . 
L 9 HOH A 25 274 25 HOH HOH . 
L 9 HOH A 26 275 26 HOH HOH . 
L 9 HOH A 27 276 27 HOH HOH . 
L 9 HOH A 28 277 28 HOH HOH . 
L 9 HOH A 29 278 29 HOH HOH . 
L 9 HOH A 30 279 30 HOH HOH . 
L 9 HOH A 31 280 31 HOH HOH . 
L 9 HOH A 32 281 32 HOH HOH . 
L 9 HOH A 33 282 33 HOH HOH . 
L 9 HOH A 34 283 34 HOH HOH . 
L 9 HOH A 35 284 35 HOH HOH . 
L 9 HOH A 36 285 36 HOH HOH . 
L 9 HOH A 37 286 37 HOH HOH . 
L 9 HOH A 38 287 38 HOH HOH . 
L 9 HOH A 39 288 39 HOH HOH . 
L 9 HOH A 40 289 40 HOH HOH . 
L 9 HOH A 41 290 41 HOH HOH . 
L 9 HOH A 42 291 42 HOH HOH . 
L 9 HOH A 43 292 43 HOH HOH . 
L 9 HOH A 44 293 44 HOH HOH . 
L 9 HOH A 45 294 45 HOH HOH . 
L 9 HOH A 46 295 46 HOH HOH . 
L 9 HOH A 47 296 47 HOH HOH . 
L 9 HOH A 48 297 48 HOH HOH . 
L 9 HOH A 49 298 49 HOH HOH . 
L 9 HOH A 50 299 50 HOH HOH . 
L 9 HOH A 51 300 52 HOH HOH . 
L 9 HOH A 52 302 53 HOH HOH . 
L 9 HOH A 53 303 54 HOH HOH . 
L 9 HOH A 54 304 56 HOH HOH . 
L 9 HOH A 55 305 57 HOH HOH . 
L 9 HOH A 56 306 58 HOH HOH . 
L 9 HOH A 57 307 59 HOH HOH . 
L 9 HOH A 58 308 60 HOH HOH . 
L 9 HOH A 59 309 61 HOH HOH . 
L 9 HOH A 60 310 62 HOH HOH . 
L 9 HOH A 61 311 64 HOH HOH . 
L 9 HOH A 62 312 65 HOH HOH . 
L 9 HOH A 63 313 68 HOH HOH . 
L 9 HOH A 64 314 70 HOH HOH . 
L 9 HOH A 65 315 71 HOH HOH . 
L 9 HOH A 66 316 72 HOH HOH . 
L 9 HOH A 67 317 77 HOH HOH . 
L 9 HOH A 68 318 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DD9 . . . D 4 -40.539 -12.677 -2.698 1 53.25 ? C1 DD9 402 A 1 
HETATM 2 C C2 DD9 . . . D 4 -40.576 -11.386 -3.495 1 52.9 ? C2 DD9 402 A 1 
HETATM 3 C C3 DD9 . . . D 4 -41.43 -11.518 -4.766 1 51.29 ? C3 DD9 402 A 1 
HETATM 4 C C4 DD9 . . . D 4 -41.515 -10.185 -5.514 1 48.78 ? C4 DD9 402 A 1 
HETATM 5 C C5 DD9 . . . D 4 -41.543 -10.305 -7.037 1 46.94 ? C5 DD9 402 A 1 
HETATM 6 C C6 DD9 . . . D 4 -40.948 -9.067 -7.725 1 46.87 ? C6 DD9 402 A 1 
HETATM 7 C C7 DD9 . . . D 4 -41.396 -8.914 -9.18 1 48.23 ? C7 DD9 402 A 1 
HETATM 8 C C8 DD9 . . . D 4 -40.254 -8.502 -10.121 1 48.04 ? C8 DD9 402 A 1 
HETATM 9 C C9 DD9 . . . D 4 -40.739 -7.749 -11.353 1 47.95 ? C9 DD9 402 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#