data_3HAQ # _model_server_result.job_id 5IJ0zhs3lKpxf0I2cKzoEQ _model_server_result.datetime_utc '2024-11-23 01:26:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3haq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 3HAQ # _exptl.entry_id 3HAQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 128.255 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description nonane _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HAQ _cell.length_a 44.998 _cell.length_b 102.211 _cell.length_c 127.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HAQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 G N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.261 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H20' _chem_comp.formula_weight 128.255 _chem_comp.id DD9 _chem_comp.mon_nstd_flag . _chem_comp.name nonane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 DD9 sing 241 n n C1 H1 DD9 sing 242 n n C1 H1A DD9 sing 243 n n C1 H1B DD9 sing 244 n n C3 C2 DD9 sing 245 n n C2 H2 DD9 sing 246 n n C2 H2A DD9 sing 247 n n C4 C3 DD9 sing 248 n n C3 H3 DD9 sing 249 n n C3 H3A DD9 sing 250 n n C5 C4 DD9 sing 251 n n C4 H4 DD9 sing 252 n n C4 H4A DD9 sing 253 n n C6 C5 DD9 sing 254 n n C5 H5 DD9 sing 255 n n C5 H5A DD9 sing 256 n n C7 C6 DD9 sing 257 n n C6 H6 DD9 sing 258 n n C6 H6A DD9 sing 259 n n C8 C7 DD9 sing 260 n n C7 H7 DD9 sing 261 n n C7 H7A DD9 sing 262 n n C9 C8 DD9 sing 263 n n C8 H8 DD9 sing 264 n n C8 H8A DD9 sing 265 n n C9 H9 DD9 sing 266 n n C9 H9A DD9 sing 267 n n C9 H9B DD9 sing 268 n n # _atom_sites.entry_id 3HAQ _atom_sites.fract_transf_matrix[1][1] 0.022223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 HP6 A 1 401 401 HP6 HP6 . D 4 DD9 A 1 402 402 DD9 DD9 . E 4 DD9 A 1 403 403 DD9 DD9 . F 5 D12 A 1 404 404 D12 D12 . G 4 DD9 A 1 405 405 DD9 DD9 . H 5 D12 A 1 406 406 D12 D12 . I 6 D10 A 1 409 409 D10 D10 . J 7 R16 A 1 411 411 R16 R16 . K 8 CPS A 1 501 501 CPS CPS . L 9 HOH A 1 250 1 HOH HOH . L 9 HOH A 2 251 2 HOH HOH . L 9 HOH A 3 252 3 HOH HOH . L 9 HOH A 4 253 4 HOH HOH . L 9 HOH A 5 254 5 HOH HOH . L 9 HOH A 6 255 6 HOH HOH . L 9 HOH A 7 256 7 HOH HOH . L 9 HOH A 8 257 8 HOH HOH . L 9 HOH A 9 258 9 HOH HOH . L 9 HOH A 10 259 10 HOH HOH . L 9 HOH A 11 260 11 HOH HOH . L 9 HOH A 12 261 12 HOH HOH . L 9 HOH A 13 262 13 HOH HOH . L 9 HOH A 14 263 14 HOH HOH . L 9 HOH A 15 264 15 HOH HOH . L 9 HOH A 16 265 16 HOH HOH . L 9 HOH A 17 266 17 HOH HOH . L 9 HOH A 18 267 18 HOH HOH . L 9 HOH A 19 268 19 HOH HOH . L 9 HOH A 20 269 20 HOH HOH . L 9 HOH A 21 270 21 HOH HOH . L 9 HOH A 22 271 22 HOH HOH . L 9 HOH A 23 272 23 HOH HOH . L 9 HOH A 24 273 24 HOH HOH . L 9 HOH A 25 274 25 HOH HOH . L 9 HOH A 26 275 26 HOH HOH . L 9 HOH A 27 276 27 HOH HOH . L 9 HOH A 28 277 28 HOH HOH . L 9 HOH A 29 278 29 HOH HOH . L 9 HOH A 30 279 30 HOH HOH . L 9 HOH A 31 280 31 HOH HOH . L 9 HOH A 32 281 32 HOH HOH . L 9 HOH A 33 282 33 HOH HOH . L 9 HOH A 34 283 34 HOH HOH . L 9 HOH A 35 284 35 HOH HOH . L 9 HOH A 36 285 36 HOH HOH . L 9 HOH A 37 286 37 HOH HOH . L 9 HOH A 38 287 38 HOH HOH . L 9 HOH A 39 288 39 HOH HOH . L 9 HOH A 40 289 40 HOH HOH . L 9 HOH A 41 290 41 HOH HOH . L 9 HOH A 42 291 42 HOH HOH . L 9 HOH A 43 292 43 HOH HOH . L 9 HOH A 44 293 44 HOH HOH . L 9 HOH A 45 294 45 HOH HOH . L 9 HOH A 46 295 46 HOH HOH . L 9 HOH A 47 296 47 HOH HOH . L 9 HOH A 48 297 48 HOH HOH . L 9 HOH A 49 298 49 HOH HOH . L 9 HOH A 50 299 50 HOH HOH . L 9 HOH A 51 300 52 HOH HOH . L 9 HOH A 52 302 53 HOH HOH . L 9 HOH A 53 303 54 HOH HOH . L 9 HOH A 54 304 56 HOH HOH . L 9 HOH A 55 305 57 HOH HOH . L 9 HOH A 56 306 58 HOH HOH . L 9 HOH A 57 307 59 HOH HOH . L 9 HOH A 58 308 60 HOH HOH . L 9 HOH A 59 309 61 HOH HOH . L 9 HOH A 60 310 62 HOH HOH . L 9 HOH A 61 311 64 HOH HOH . L 9 HOH A 62 312 65 HOH HOH . L 9 HOH A 63 313 68 HOH HOH . L 9 HOH A 64 314 70 HOH HOH . L 9 HOH A 65 315 71 HOH HOH . L 9 HOH A 66 316 72 HOH HOH . L 9 HOH A 67 317 77 HOH HOH . L 9 HOH A 68 318 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DD9 . . . E 4 -34.862 0.239 -2.917 1 35.45 ? C1 DD9 403 A 1 HETATM 2 C C2 DD9 . . . E 4 -35.403 1.578 -3.381 1 34.32 ? C2 DD9 403 A 1 HETATM 3 C C3 DD9 . . . E 4 -35.258 1.729 -4.891 1 35.63 ? C3 DD9 403 A 1 HETATM 4 C C4 DD9 . . . E 4 -35.964 2.959 -5.466 1 36.26 ? C4 DD9 403 A 1 HETATM 5 C C5 DD9 . . . E 4 -35.53 3.204 -6.916 1 36.62 ? C5 DD9 403 A 1 HETATM 6 C C6 DD9 . . . E 4 -36.619 3.874 -7.76 1 37.3 ? C6 DD9 403 A 1 HETATM 7 C C7 DD9 . . . E 4 -36.644 3.36 -9.192 1 38.23 ? C7 DD9 403 A 1 HETATM 8 C C8 DD9 . . . E 4 -36.565 4.47 -10.238 1 39.84 ? C8 DD9 403 A 1 HETATM 9 C C9 DD9 . . . E 4 -37.632 4.32 -11.302 1 41.21 ? C9 DD9 403 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #