data_3HAQ # _model_server_result.job_id SSpPnqABmnuWhJL4HdU_DA _model_server_result.datetime_utc '2024-11-23 00:50:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3haq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":406}' # _entry.id 3HAQ # _exptl.entry_id 3HAQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HAQ _cell.length_a 44.998 _cell.length_b 102.211 _cell.length_c 127.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HAQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 H N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.261 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 204 n n C1 H11 D12 sing 205 n n C1 H12 D12 sing 206 n n C1 H13 D12 sing 207 n n C2 C3 D12 sing 208 n n C2 H21 D12 sing 209 n n C2 H22 D12 sing 210 n n C3 C4 D12 sing 211 n n C3 H31 D12 sing 212 n n C3 H32 D12 sing 213 n n C4 C5 D12 sing 214 n n C4 H41 D12 sing 215 n n C4 H42 D12 sing 216 n n C5 C6 D12 sing 217 n n C5 H51 D12 sing 218 n n C5 H52 D12 sing 219 n n C6 C7 D12 sing 220 n n C6 H61 D12 sing 221 n n C6 H62 D12 sing 222 n n C7 C8 D12 sing 223 n n C7 H71 D12 sing 224 n n C7 H72 D12 sing 225 n n C8 C9 D12 sing 226 n n C8 H81 D12 sing 227 n n C8 H82 D12 sing 228 n n C9 C10 D12 sing 229 n n C9 H91 D12 sing 230 n n C9 H92 D12 sing 231 n n C10 C11 D12 sing 232 n n C10 H101 D12 sing 233 n n C10 H102 D12 sing 234 n n C11 C12 D12 sing 235 n n C11 H111 D12 sing 236 n n C11 H112 D12 sing 237 n n C12 H121 D12 sing 238 n n C12 H122 D12 sing 239 n n C12 H123 D12 sing 240 n n # _atom_sites.entry_id 3HAQ _atom_sites.fract_transf_matrix[1][1] 0.022223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 HP6 A 1 401 401 HP6 HP6 . D 4 DD9 A 1 402 402 DD9 DD9 . E 4 DD9 A 1 403 403 DD9 DD9 . F 5 D12 A 1 404 404 D12 D12 . G 4 DD9 A 1 405 405 DD9 DD9 . H 5 D12 A 1 406 406 D12 D12 . I 6 D10 A 1 409 409 D10 D10 . J 7 R16 A 1 411 411 R16 R16 . K 8 CPS A 1 501 501 CPS CPS . L 9 HOH A 1 250 1 HOH HOH . L 9 HOH A 2 251 2 HOH HOH . L 9 HOH A 3 252 3 HOH HOH . L 9 HOH A 4 253 4 HOH HOH . L 9 HOH A 5 254 5 HOH HOH . L 9 HOH A 6 255 6 HOH HOH . L 9 HOH A 7 256 7 HOH HOH . L 9 HOH A 8 257 8 HOH HOH . L 9 HOH A 9 258 9 HOH HOH . L 9 HOH A 10 259 10 HOH HOH . L 9 HOH A 11 260 11 HOH HOH . L 9 HOH A 12 261 12 HOH HOH . L 9 HOH A 13 262 13 HOH HOH . L 9 HOH A 14 263 14 HOH HOH . L 9 HOH A 15 264 15 HOH HOH . L 9 HOH A 16 265 16 HOH HOH . L 9 HOH A 17 266 17 HOH HOH . L 9 HOH A 18 267 18 HOH HOH . L 9 HOH A 19 268 19 HOH HOH . L 9 HOH A 20 269 20 HOH HOH . L 9 HOH A 21 270 21 HOH HOH . L 9 HOH A 22 271 22 HOH HOH . L 9 HOH A 23 272 23 HOH HOH . L 9 HOH A 24 273 24 HOH HOH . L 9 HOH A 25 274 25 HOH HOH . L 9 HOH A 26 275 26 HOH HOH . L 9 HOH A 27 276 27 HOH HOH . L 9 HOH A 28 277 28 HOH HOH . L 9 HOH A 29 278 29 HOH HOH . L 9 HOH A 30 279 30 HOH HOH . L 9 HOH A 31 280 31 HOH HOH . L 9 HOH A 32 281 32 HOH HOH . L 9 HOH A 33 282 33 HOH HOH . L 9 HOH A 34 283 34 HOH HOH . L 9 HOH A 35 284 35 HOH HOH . L 9 HOH A 36 285 36 HOH HOH . L 9 HOH A 37 286 37 HOH HOH . L 9 HOH A 38 287 38 HOH HOH . L 9 HOH A 39 288 39 HOH HOH . L 9 HOH A 40 289 40 HOH HOH . L 9 HOH A 41 290 41 HOH HOH . L 9 HOH A 42 291 42 HOH HOH . L 9 HOH A 43 292 43 HOH HOH . L 9 HOH A 44 293 44 HOH HOH . L 9 HOH A 45 294 45 HOH HOH . L 9 HOH A 46 295 46 HOH HOH . L 9 HOH A 47 296 47 HOH HOH . L 9 HOH A 48 297 48 HOH HOH . L 9 HOH A 49 298 49 HOH HOH . L 9 HOH A 50 299 50 HOH HOH . L 9 HOH A 51 300 52 HOH HOH . L 9 HOH A 52 302 53 HOH HOH . L 9 HOH A 53 303 54 HOH HOH . L 9 HOH A 54 304 56 HOH HOH . L 9 HOH A 55 305 57 HOH HOH . L 9 HOH A 56 306 58 HOH HOH . L 9 HOH A 57 307 59 HOH HOH . L 9 HOH A 58 308 60 HOH HOH . L 9 HOH A 59 309 61 HOH HOH . L 9 HOH A 60 310 62 HOH HOH . L 9 HOH A 61 311 64 HOH HOH . L 9 HOH A 62 312 65 HOH HOH . L 9 HOH A 63 313 68 HOH HOH . L 9 HOH A 64 314 70 HOH HOH . L 9 HOH A 65 315 71 HOH HOH . L 9 HOH A 66 316 72 HOH HOH . L 9 HOH A 67 317 77 HOH HOH . L 9 HOH A 68 318 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . H 5 -21.044 -34.314 14.1 1 49.67 ? C1 D12 406 A 1 HETATM 2 C C2 D12 . . . H 5 -21.066 -33.709 12.714 1 48.94 ? C2 D12 406 A 1 HETATM 3 C C3 D12 . . . H 5 -19.997 -32.627 12.559 1 49.79 ? C3 D12 406 A 1 HETATM 4 C C4 D12 . . . H 5 -19.4 -32.61 11.151 1 50.6 ? C4 D12 406 A 1 HETATM 5 C C5 D12 . . . H 5 -19.68 -31.343 10.329 1 51.24 ? C5 D12 406 A 1 HETATM 6 C C6 D12 . . . H 5 -18.46 -30.426 10.24 1 50.95 ? C6 D12 406 A 1 HETATM 7 C C7 D12 . . . H 5 -17.535 -30.558 9.373 1 51.93 ? C7 D12 406 A 1 HETATM 8 C C8 D12 . . . H 5 -16.614 -30.692 8.607 1 51.38 ? C8 D12 406 A 1 HETATM 9 C C9 D12 . . . H 5 -15.68 -30.904 7.866 1 52.09 ? C9 D12 406 A 1 HETATM 10 C C10 D12 . . . H 5 -14.848 -31.099 7.009 1 52.13 ? C10 D12 406 A 1 HETATM 11 C C11 D12 . . . H 5 -14.138 -31.215 6.05 1 52.84 ? C11 D12 406 A 1 HETATM 12 C C12 D12 . . . H 5 -13.316 -31.431 5.106 1 52.17 ? C12 D12 406 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #