data_3HAR # _model_server_result.job_id VugsrL6BSeguW-hiNAMEIA _model_server_result.datetime_utc '2024-11-23 00:48:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3har # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3HAR # _exptl.entry_id 3HAR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HAR _cell.length_a 45.078 _cell.length_b 102.418 _cell.length_c 128.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HAR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.275 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HAR _atom_sites.fract_transf_matrix[1][1] 0.022184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 CPS A 1 501 501 CPS CPS . D 4 HOH A 1 250 3 HOH HOH . D 4 HOH A 2 251 4 HOH HOH . D 4 HOH A 3 252 5 HOH HOH . D 4 HOH A 4 253 6 HOH HOH . D 4 HOH A 5 254 7 HOH HOH . D 4 HOH A 6 255 8 HOH HOH . D 4 HOH A 7 256 9 HOH HOH . D 4 HOH A 8 257 10 HOH HOH . D 4 HOH A 9 258 11 HOH HOH . D 4 HOH A 10 259 12 HOH HOH . D 4 HOH A 11 260 13 HOH HOH . D 4 HOH A 12 261 14 HOH HOH . D 4 HOH A 13 262 15 HOH HOH . D 4 HOH A 14 263 16 HOH HOH . D 4 HOH A 15 264 17 HOH HOH . D 4 HOH A 16 265 18 HOH HOH . D 4 HOH A 17 266 19 HOH HOH . D 4 HOH A 18 267 20 HOH HOH . D 4 HOH A 19 268 21 HOH HOH . D 4 HOH A 20 269 22 HOH HOH . D 4 HOH A 21 270 23 HOH HOH . D 4 HOH A 22 271 24 HOH HOH . D 4 HOH A 23 272 26 HOH HOH . D 4 HOH A 24 273 27 HOH HOH . D 4 HOH A 25 274 28 HOH HOH . D 4 HOH A 26 275 29 HOH HOH . D 4 HOH A 27 276 30 HOH HOH . D 4 HOH A 28 277 32 HOH HOH . D 4 HOH A 29 278 33 HOH HOH . D 4 HOH A 30 279 34 HOH HOH . D 4 HOH A 31 280 35 HOH HOH . D 4 HOH A 32 281 36 HOH HOH . D 4 HOH A 33 282 37 HOH HOH . D 4 HOH A 34 283 38 HOH HOH . D 4 HOH A 35 284 39 HOH HOH . D 4 HOH A 36 285 40 HOH HOH . D 4 HOH A 37 286 41 HOH HOH . D 4 HOH A 38 287 42 HOH HOH . D 4 HOH A 39 288 43 HOH HOH . D 4 HOH A 40 289 44 HOH HOH . D 4 HOH A 41 290 45 HOH HOH . D 4 HOH A 42 291 46 HOH HOH . D 4 HOH A 43 292 47 HOH HOH . D 4 HOH A 44 293 48 HOH HOH . D 4 HOH A 45 294 49 HOH HOH . D 4 HOH A 46 295 50 HOH HOH . D 4 HOH A 47 296 51 HOH HOH . D 4 HOH A 48 297 52 HOH HOH . D 4 HOH A 49 298 53 HOH HOH . D 4 HOH A 50 299 54 HOH HOH . D 4 HOH A 51 300 55 HOH HOH . D 4 HOH A 52 302 56 HOH HOH . D 4 HOH A 53 303 57 HOH HOH . D 4 HOH A 54 304 58 HOH HOH . D 4 HOH A 55 305 59 HOH HOH . D 4 HOH A 56 306 60 HOH HOH . D 4 HOH A 57 307 61 HOH HOH . D 4 HOH A 58 308 63 HOH HOH . D 4 HOH A 59 309 64 HOH HOH . D 4 HOH A 60 310 65 HOH HOH . D 4 HOH A 61 311 66 HOH HOH . D 4 HOH A 62 312 67 HOH HOH . D 4 HOH A 63 313 68 HOH HOH . D 4 HOH A 64 314 69 HOH HOH . D 4 HOH A 65 315 70 HOH HOH . D 4 HOH A 66 316 71 HOH HOH . D 4 HOH A 67 317 73 HOH HOH . D 4 HOH A 68 318 76 HOH HOH . D 4 HOH A 69 319 78 HOH HOH . D 4 HOH A 70 320 83 HOH HOH . D 4 HOH A 71 321 86 HOH HOH . D 4 HOH A 72 322 88 HOH HOH . D 4 HOH A 73 323 89 HOH HOH . D 4 HOH A 74 324 91 HOH HOH . D 4 HOH A 75 325 92 HOH HOH . D 4 HOH A 76 326 93 HOH HOH . D 4 HOH A 77 327 94 HOH HOH . D 4 HOH A 78 328 96 HOH HOH . D 4 HOH A 79 329 97 HOH HOH . D 4 HOH A 80 330 98 HOH HOH . D 4 HOH A 81 331 99 HOH HOH . D 4 HOH A 82 332 103 HOH HOH . D 4 HOH A 83 333 104 HOH HOH . D 4 HOH A 84 334 105 HOH HOH . D 4 HOH A 85 335 106 HOH HOH . D 4 HOH A 86 336 107 HOH HOH . D 4 HOH A 87 337 109 HOH HOH . D 4 HOH A 88 338 110 HOH HOH . D 4 HOH A 89 339 111 HOH HOH . D 4 HOH A 90 340 112 HOH HOH . D 4 HOH A 91 341 113 HOH HOH . D 4 HOH A 92 342 114 HOH HOH . D 4 HOH A 93 343 115 HOH HOH . D 4 HOH A 94 344 117 HOH HOH . D 4 HOH A 95 345 118 HOH HOH . D 4 HOH A 96 346 119 HOH HOH . D 4 HOH A 97 347 120 HOH HOH . D 4 HOH A 98 348 123 HOH HOH . D 4 HOH A 99 349 125 HOH HOH . D 4 HOH A 100 350 126 HOH HOH . D 4 HOH A 101 351 127 HOH HOH . D 4 HOH A 102 352 128 HOH HOH . D 4 HOH A 103 353 129 HOH HOH . D 4 HOH A 104 354 131 HOH HOH . D 4 HOH A 105 355 133 HOH HOH . D 4 HOH A 106 356 136 HOH HOH . D 4 HOH A 107 357 138 HOH HOH . D 4 HOH A 108 358 5 HOH HOH . D 4 HOH A 109 359 7 HOH HOH . D 4 HOH A 110 360 12 HOH HOH . D 4 HOH A 111 361 13 HOH HOH . D 4 HOH A 112 362 18 HOH HOH . D 4 HOH A 113 363 20 HOH HOH . D 4 HOH A 114 364 21 HOH HOH . D 4 HOH A 115 365 26 HOH HOH . D 4 HOH A 116 366 30 HOH HOH . D 4 HOH A 117 367 38 HOH HOH . D 4 HOH A 118 368 41 HOH HOH . D 4 HOH A 119 369 42 HOH HOH . D 4 HOH A 120 370 43 HOH HOH . D 4 HOH A 121 371 58 HOH HOH . D 4 HOH A 122 372 60 HOH HOH . D 4 HOH A 123 373 19 HOH HOH . D 4 HOH A 124 374 48 HOH HOH . D 4 HOH A 125 375 61 HOH HOH . D 4 HOH A 126 376 92 HOH HOH . D 4 HOH A 127 377 93 HOH HOH . D 4 HOH A 128 378 94 HOH HOH . D 4 HOH A 129 379 2 HOH HOH . D 4 HOH A 130 380 14 HOH HOH . D 4 HOH A 131 381 47 HOH HOH . D 4 HOH A 132 382 106 HOH HOH . D 4 HOH A 133 383 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 26.43 10.485 -3.016 1 16.41 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 26.727 9.887 -4.363 1 17.46 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 27.244 8.466 -4.309 1 17.9 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 27.975 8.082 -3.016 1 16.99 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 27.247 8.543 -1.77 1 15.03 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 26.465 9.65 -1.751 1 15.26 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 25.806 9.993 -0.451 1 16.41 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 24.851 10.902 -0.301 1 14.62 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 24.203 11.179 1.001 1 16.18 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 23.284 12.155 1.004 1 14.66 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 22.539 12.573 2.181 1 17.39 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 21.663 13.547 1.948 1 19.51 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 20.795 14.209 2.917 1 22.17 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 20.098 15.245 2.404 1 24.64 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 19.172 16.118 3.096 1 27.41 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 26.327 12.022 -2.926 1 15.14 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 24.923 10.286 -3.296 1 15.44 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 27.453 7.693 -0.545 1 17.63 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 24.527 10.401 2.25 1 15.37 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 20.758 13.767 4.355 1 22.01 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 20 #