data_3HAS # _model_server_result.job_id q7RsjIvNCD68iWR1cUZenA _model_server_result.datetime_utc '2024-11-16 22:50:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3has # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3HAS # _exptl.entry_id 3HAS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HAS _cell.length_a 45.169 _cell.length_b 102.348 _cell.length_c 128.271 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.278 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HAS _atom_sites.fract_transf_matrix[1][1] 0.022139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 D12 A 1 401 401 D12 D12 . D 4 OCT A 1 402 402 OCT OCT . E 5 D10 A 1 403 403 D10 D10 . F 6 R16 A 1 404 404 R16 R16 . G 7 HP6 A 1 405 405 HP6 HP6 . H 3 D12 A 1 406 406 D12 D12 . I 3 D12 A 1 407 407 D12 D12 . J 5 D10 A 1 409 409 D10 D10 . K 8 CPS A 1 501 501 CPS CPS . L 9 HOH A 1 250 1 HOH HOH . L 9 HOH A 2 251 2 HOH HOH . L 9 HOH A 3 252 3 HOH HOH . L 9 HOH A 4 253 4 HOH HOH . L 9 HOH A 5 254 5 HOH HOH . L 9 HOH A 6 255 6 HOH HOH . L 9 HOH A 7 256 7 HOH HOH . L 9 HOH A 8 257 8 HOH HOH . L 9 HOH A 9 258 10 HOH HOH . L 9 HOH A 10 259 11 HOH HOH . L 9 HOH A 11 260 12 HOH HOH . L 9 HOH A 12 261 13 HOH HOH . L 9 HOH A 13 262 14 HOH HOH . L 9 HOH A 14 263 15 HOH HOH . L 9 HOH A 15 264 16 HOH HOH . L 9 HOH A 16 265 17 HOH HOH . L 9 HOH A 17 266 18 HOH HOH . L 9 HOH A 18 267 19 HOH HOH . L 9 HOH A 19 268 20 HOH HOH . L 9 HOH A 20 269 21 HOH HOH . L 9 HOH A 21 270 22 HOH HOH . L 9 HOH A 22 271 23 HOH HOH . L 9 HOH A 23 272 24 HOH HOH . L 9 HOH A 24 273 25 HOH HOH . L 9 HOH A 25 274 26 HOH HOH . L 9 HOH A 26 275 27 HOH HOH . L 9 HOH A 27 276 28 HOH HOH . L 9 HOH A 28 277 29 HOH HOH . L 9 HOH A 29 278 31 HOH HOH . L 9 HOH A 30 279 32 HOH HOH . L 9 HOH A 31 280 33 HOH HOH . L 9 HOH A 32 281 34 HOH HOH . L 9 HOH A 33 282 35 HOH HOH . L 9 HOH A 34 283 36 HOH HOH . L 9 HOH A 35 284 37 HOH HOH . L 9 HOH A 36 285 38 HOH HOH . L 9 HOH A 37 286 39 HOH HOH . L 9 HOH A 38 287 40 HOH HOH . L 9 HOH A 39 288 41 HOH HOH . L 9 HOH A 40 289 42 HOH HOH . L 9 HOH A 41 290 43 HOH HOH . L 9 HOH A 42 291 44 HOH HOH . L 9 HOH A 43 292 45 HOH HOH . L 9 HOH A 44 293 46 HOH HOH . L 9 HOH A 45 294 47 HOH HOH . L 9 HOH A 46 295 48 HOH HOH . L 9 HOH A 47 296 49 HOH HOH . L 9 HOH A 48 297 50 HOH HOH . L 9 HOH A 49 298 51 HOH HOH . L 9 HOH A 50 299 52 HOH HOH . L 9 HOH A 51 300 53 HOH HOH . L 9 HOH A 52 302 1 HOH HOH . L 9 HOH A 53 303 2 HOH HOH . L 9 HOH A 54 304 3 HOH HOH . L 9 HOH A 55 305 4 HOH HOH . L 9 HOH A 56 306 5 HOH HOH . L 9 HOH A 57 307 6 HOH HOH . L 9 HOH A 58 308 7 HOH HOH . L 9 HOH A 59 309 8 HOH HOH . L 9 HOH A 60 310 9 HOH HOH . L 9 HOH A 61 311 10 HOH HOH . L 9 HOH A 62 312 11 HOH HOH . L 9 HOH A 63 313 12 HOH HOH . L 9 HOH A 64 314 13 HOH HOH . L 9 HOH A 65 315 14 HOH HOH . L 9 HOH A 66 316 15 HOH HOH . L 9 HOH A 67 317 16 HOH HOH . L 9 HOH A 68 318 17 HOH HOH . L 9 HOH A 69 319 18 HOH HOH . L 9 HOH A 70 320 19 HOH HOH . L 9 HOH A 71 321 20 HOH HOH . L 9 HOH A 72 322 21 HOH HOH . L 9 HOH A 73 323 22 HOH HOH . L 9 HOH A 74 324 23 HOH HOH . L 9 HOH A 75 325 25 HOH HOH . L 9 HOH A 76 326 28 HOH HOH . L 9 HOH A 77 327 30 HOH HOH . L 9 HOH A 78 328 31 HOH HOH . L 9 HOH A 79 329 32 HOH HOH . L 9 HOH A 80 330 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 -26.627 -10.52 -3.028 1 21.38 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 -26.999 -9.942 -4.378 1 23.35 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 -27.453 -8.502 -4.299 1 22.4 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 -28.159 -8.103 -3.002 1 21.52 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 -27.433 -8.577 -1.766 1 21.67 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 -26.654 -9.678 -1.762 1 20.72 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 -25.98 -10.053 -0.478 1 21.74 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 -25.02 -10.976 -0.333 1 18.76 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 -24.384 -11.265 0.974 1 17.05 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 -23.393 -12.153 1.006 1 18.45 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 -22.672 -12.524 2.216 1 20.86 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 -21.792 -13.49 2.028 1 23.74 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 -20.925 -14.115 3.02 1 26.38 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 -20.247 -15.162 2.519 1 30.34 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 -19.305 -16.026 3.184 1 33.62 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 -26.421 -12.045 -2.94 1 20.31 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 -25.132 -10.247 -3.335 1 17.31 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 -27.611 -7.746 -0.519 1 21.15 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 -24.815 -10.488 2.203 1 18.89 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 -20.831 -13.612 4.433 1 29.16 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 20 #