data_3HAU # _model_server_result.job_id XH5KQ3hwuj9AuQZJ3FgH7A _model_server_result.datetime_utc '2024-11-24 04:57:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hau # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":0}' # _entry.id 3HAU # _exptl.entry_id 3HAU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 770.983 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HAU _cell.length_a 51.013 _cell.length_b 58.401 _cell.length_c 61.466 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HAU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F 2 1 A,B,C,D,E,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 35 A GLU 35 1_555 A N NLE 36 A NLE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C NLE 36 A NLE 36 1_555 A N ASN 37 A ASN 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C GLY 40 A GLY 40 1_555 A N SMC 41 A SMC 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C SMC 41 A SMC 41 1_555 A N TRP 42 A TRP 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C LYS 45 A LYS 45 1_555 A N NLE 46 A NLE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C NLE 46 A NLE 46 1_555 A N ILE 47 A ILE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 A C ILE 66 A ILE 66 1_555 A N ABA 67 A ABA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C ABA 67 A ABA 67 1_555 A N GLY 68 A GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale9 A C GLY 94 A GLY 94 1_555 A N ABA 95 A ABA 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale10 A C ABA 95 A ABA 95 1_555 A N THR 96 A THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 B C GLU 35 B GLU 35 1_555 B N NLE 36 B NLE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C NLE 36 B NLE 36 1_555 B N ASN 37 B ASN 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 B C GLY 40 B GLY 40 1_555 B N SMC 41 B SMC 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C SMC 41 B SMC 41 1_555 B N TRP 42 B TRP 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 B C LYS 45 B LYS 45 1_555 B N NLE 46 B NLE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale16 B C NLE 46 B NLE 46 1_555 B N ILE 47 B ILE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? covale ? covale17 B C ILE 66 B ILE 66 1_555 B N ABA 67 B ABA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale18 B C ABA 67 B ABA 67 1_555 B N GLY 68 B GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale19 B C GLY 94 B GLY 94 1_555 B N ABA 95 B ABA 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale20 B C ABA 95 B ABA 95 1_555 B N THR 96 B THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C35 H68 N11 O8 1' _chem_comp.formula_weight 770.983 _chem_comp.id 2NC _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms p2/NC # _atom_sites.entry_id 3HAU _atom_sites.fract_transf_matrix[1][1] 0.019603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2NC A 1 0 0 2NC 2NC . D 3 SO4 A 1 401 401 SO4 SO4 . E 4 HOH A 1 100 1 HOH HOH . E 4 HOH A 2 101 3 HOH HOH . E 4 HOH A 3 102 4 HOH HOH . E 4 HOH A 4 103 5 HOH HOH . E 4 HOH A 5 104 8 HOH HOH . E 4 HOH A 6 105 10 HOH HOH . E 4 HOH A 7 106 13 HOH HOH . E 4 HOH A 8 107 14 HOH HOH . E 4 HOH A 9 108 17 HOH HOH . E 4 HOH A 10 109 19 HOH HOH . E 4 HOH A 11 110 22 HOH HOH . E 4 HOH A 12 111 24 HOH HOH . E 4 HOH A 13 112 29 HOH HOH . E 4 HOH A 14 113 31 HOH HOH . E 4 HOH A 15 114 33 HOH HOH . E 4 HOH A 16 115 35 HOH HOH . E 4 HOH A 17 116 36 HOH HOH . E 4 HOH A 18 117 38 HOH HOH . E 4 HOH A 19 118 40 HOH HOH . E 4 HOH A 20 119 42 HOH HOH . E 4 HOH A 21 120 43 HOH HOH . E 4 HOH A 22 121 44 HOH HOH . E 4 HOH A 23 122 45 HOH HOH . E 4 HOH A 24 123 46 HOH HOH . E 4 HOH A 25 124 48 HOH HOH . E 4 HOH A 26 125 49 HOH HOH . E 4 HOH A 27 126 51 HOH HOH . E 4 HOH A 28 127 52 HOH HOH . E 4 HOH A 29 128 28 HOH HOH . E 4 HOH A 30 129 54 HOH HOH . E 4 HOH A 31 130 57 HOH HOH . E 4 HOH A 32 131 59 HOH HOH . E 4 HOH A 33 132 60 HOH HOH . E 4 HOH A 34 133 61 HOH HOH . E 4 HOH A 35 134 69 HOH HOH . E 4 HOH A 36 135 70 HOH HOH . E 4 HOH A 37 136 71 HOH HOH . E 4 HOH A 38 137 72 HOH HOH . E 4 HOH A 39 138 73 HOH HOH . E 4 HOH A 40 139 74 HOH HOH . E 4 HOH A 41 140 83 HOH HOH . E 4 HOH A 42 141 84 HOH HOH . E 4 HOH A 43 142 64 HOH HOH . E 4 HOH A 44 144 87 HOH HOH . F 4 HOH B 1 100 2 HOH HOH . F 4 HOH B 2 101 6 HOH HOH . F 4 HOH B 3 102 7 HOH HOH . F 4 HOH B 4 103 9 HOH HOH . F 4 HOH B 5 104 11 HOH HOH . F 4 HOH B 6 105 12 HOH HOH . F 4 HOH B 7 106 15 HOH HOH . F 4 HOH B 8 107 16 HOH HOH . F 4 HOH B 9 108 18 HOH HOH . F 4 HOH B 10 109 20 HOH HOH . F 4 HOH B 11 110 21 HOH HOH . F 4 HOH B 12 111 23 HOH HOH . F 4 HOH B 13 112 25 HOH HOH . F 4 HOH B 14 113 26 HOH HOH . F 4 HOH B 15 114 27 HOH HOH . F 4 HOH B 16 116 30 HOH HOH . F 4 HOH B 17 117 32 HOH HOH . F 4 HOH B 18 118 34 HOH HOH . F 4 HOH B 19 119 37 HOH HOH . F 4 HOH B 20 120 39 HOH HOH . F 4 HOH B 21 121 41 HOH HOH . F 4 HOH B 22 122 47 HOH HOH . F 4 HOH B 23 123 50 HOH HOH . F 4 HOH B 24 124 55 HOH HOH . F 4 HOH B 25 125 56 HOH HOH . F 4 HOH B 26 126 58 HOH HOH . F 4 HOH B 27 127 62 HOH HOH . F 4 HOH B 28 128 53 HOH HOH . F 4 HOH B 29 129 63 HOH HOH . F 4 HOH B 30 130 65 HOH HOH . F 4 HOH B 31 131 66 HOH HOH . F 4 HOH B 32 132 67 HOH HOH . F 4 HOH B 33 133 68 HOH HOH . F 4 HOH B 34 134 75 HOH HOH . F 4 HOH B 35 135 76 HOH HOH . F 4 HOH B 36 136 77 HOH HOH . F 4 HOH B 37 137 78 HOH HOH . F 4 HOH B 38 138 79 HOH HOH . F 4 HOH B 39 139 80 HOH HOH . F 4 HOH B 40 140 81 HOH HOH . F 4 HOH B 41 141 82 HOH HOH . F 4 HOH B 42 142 89 HOH HOH . F 4 HOH B 43 143 86 HOH HOH . F 4 HOH B 44 144 85 HOH HOH . F 4 HOH B 45 145 88 HOH HOH . F 4 HOH B 46 146 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 2NC . . . C 2 4.359 -9.051 16.579 1 17.42 ? C 2NC 0 A 1 HETATM 2 O O 2NC . . . C 2 3.536 -8.663 17.391 1 20.22 ? O 2NC 0 A 1 HETATM 3 C CH3 2NC . . . C 2 4.038 -9.777 15.307 1 18.96 ? CH3 2NC 0 A 1 HETATM 4 N N 2NC . . . C 2 5.648 -8.783 16.784 1 15.11 ? N 2NC 0 A 1 HETATM 5 C CA 2NC . . . C 2 6.15 -8.173 17.998 1 13.65 ? CA 2NC 0 A 1 HETATM 6 C C1 2NC . . . C 2 6.72 -6.743 17.842 1 12.83 ? C1 2NC 0 A 1 HETATM 7 O O1 2NC . . . C 2 6.994 -6.089 18.822 1 12.94 ? O1 2NC 0 A 1 HETATM 8 C CB 2NC . . . C 2 7.244 -9.047 18.623 1 15.81 ? CB 2NC 0 A 1 HETATM 9 O OG1 2NC . . . C 2 8.337 -9.129 17.719 1 16.93 ? OG1 2NC 0 A 1 HETATM 10 C CG2 2NC . . . C 2 6.691 -10.437 19.004 1 17.06 ? CG2 2NC 0 A 1 HETATM 11 N N1 2NC . . . C 2 6.825 -6.259 16.615 1 12.08 ? N1 2NC 0 A 1 HETATM 12 C CA1 2NC . . . C 2 7.355 -4.959 16.315 1 12.06 ? CA1 2NC 0 A 1 HETATM 13 C C2 2NC . . . C 2 6.286 -4.146 15.602 1 13.16 ? C2 2NC 0 A 1 HETATM 14 O O2 2NC . . . C 2 6.191 -4.153 14.374 1 15.88 ? O2 2NC 0 A 1 HETATM 15 C CB1 2NC . . . C 2 8.658 -5.007 15.496 1 12.38 ? CB1 2NC 0 A 1 HETATM 16 C CG1 2NC . . . C 2 9.69 -5.975 16.069 1 13.97 ? CG1 2NC 0 A 1 HETATM 17 C CG21 2NC . . . C 2 9.276 -3.632 15.343 1 12.93 ? CG21 2NC 0 A 1 HETATM 18 C CD1 2NC . . . C 2 10.21 -5.759 17.482 1 14.22 ? CD1 2NC 0 A 1 HETATM 19 N N2 2NC . . . C 2 5.523 -3.39 16.358 1 12.26 ? N2 2NC 0 A 1 HETATM 20 C CA2 2NC . . . C 2 4.325 -2.734 15.815 1 13.08 ? CA2 2NC 0 A 1 HETATM 21 C C3 2NC . . . C 2 4.504 -1.235 15.684 1 13.28 ? C3 2NC 0 A 1 HETATM 22 C CB2 2NC . . . C 2 3.072 -3.058 16.606 1 13.03 ? CB2 2NC 0 A 1 HETATM 23 C CG 2NC . . . C 2 2.793 -4.558 16.822 1 14.4 ? CG 2NC 0 A 1 HETATM 24 C CD 2NC . . . C 2 2.717 -5.415 15.562 1 15.55 ? CD 2NC 0 A 1 HETATM 25 C CE 2NC . . . C 2 1.63 -4.913 14.62 1 19.26 ? CE 2NC 0 A 1 HETATM 26 N N3 2NC . . . C 2 5.757 -0.919 14.992 1 12.28 ? N3 2NC 0 A 1 HETATM 27 C CA3 2NC . . . C 2 5.731 0.348 14.19 1 13.63 ? CA3 2NC 0 A 1 HETATM 28 C C4 2NC . . . C 2 4.669 0.293 13.102 1 12.76 ? C4 2NC 0 A 1 HETATM 29 O O3 2NC . . . C 2 4.409 -0.74 12.499 1 15.31 ? O3 2NC 0 A 1 HETATM 30 C CB3 2NC . . . C 2 7.121 0.586 13.609 1 15.69 ? CB3 2NC 0 A 1 HETATM 31 C CG3 2NC . . . C 2 7.32 1.804 12.726 1 19.06 ? CG3 2NC 0 A 1 HETATM 32 C CD2 2NC . . . C 2 7.499 1.386 11.262 1 23.86 ? CD2 2NC 0 A 1 HETATM 33 C CE1 2NC . . . C 2 8.603 0.382 10.854 1 23.67 ? CE1 2NC 0 A 1 HETATM 34 N N4 2NC . . . C 2 4.073 1.446 12.79 1 11.83 ? N4 2NC 0 A 1 HETATM 35 C CA4 2NC . . . C 2 3.149 1.528 11.663 1 10.9 ? CA4 2NC 0 A 1 HETATM 36 C C5 2NC . . . C 2 3.201 2.926 11.055 1 11.54 ? C5 2NC 0 A 1 HETATM 37 O O4 2NC . . . C 2 3.313 3.961 11.749 1 11.52 ? O4 2NC 0 A 1 HETATM 38 C CB4 2NC . . . C 2 1.76 1.181 12.114 1 12.96 ? CB4 2NC 0 A 1 HETATM 39 C CG4 2NC . . . C 2 0.652 1.345 11.058 1 11.06 ? CG4 2NC 0 A 1 HETATM 40 C CD3 2NC . . . C 2 0.096 2.739 10.92 1 11.45 ? CD3 2NC 0 A 1 HETATM 41 O OE1 2NC . . . C 2 0.132 3.491 11.872 1 14.69 ? OE1 2NC 0 A 1 HETATM 42 N NE2 2NC . . . C 2 -0.434 3.077 9.749 1 13.09 ? NE2 2NC 0 A 1 HETATM 43 N N5 2NC . . . C 2 3.139 2.967 9.732 1 12.92 ? N5 2NC 0 A 1 HETATM 44 C CA5 2NC . . . C 2 3.243 4.189 9.011 1 14.98 ? CA5 2NC 0 A 1 HETATM 45 C C6 2NC . . . C 2 2.15 4.328 8.012 1 18.26 ? C6 2NC 0 A 1 HETATM 46 O O5 2NC . . . C 2 1.833 3.36 7.304 1 16.11 ? O5 2NC 0 A 1 HETATM 47 C CB5 2NC . . . C 2 4.571 4.238 8.32 1 16.45 ? CB5 2NC 0 A 1 HETATM 48 C CG5 2NC . . . C 2 5.732 4.557 9.24 1 20.56 ? CG5 2NC 0 A 1 HETATM 49 C CD4 2NC . . . C 2 6.912 3.738 8.801 0.5 19.63 ? CD4 2NC 0 A 1 HETATM 50 N NE 2NC . . . C 2 8.198 4.386 8.622 0.5 20.42 ? NE 2NC 0 A 1 HETATM 51 C CZ 2NC . . . C 2 8.444 5.497 7.908 1 21.8 ? CZ 2NC 0 A 1 HETATM 52 N NH1 2NC . . . C 2 7.481 6.223 7.353 1 24.65 ? NH1 2NC 0 A 1 HETATM 53 N NH2 2NC . . . C 2 9.689 5.919 7.762 1 24.21 ? NH2 2NC 0 A 1 HETATM 54 N N6 2NC . . . C 2 1.44 5.461 8.088 1 17.29 ? N6 2NC 0 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 54 #