data_3HB4 # _model_server_result.job_id 4y4XJHXQMArT0cWnS_xRHA _model_server_result.datetime_utc '2025-09-01 02:43:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hb4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 3HB4 # _exptl.entry_id 3HB4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.529 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{[(9beta,14beta,16alpha,17alpha)-3,17-dihydroxyestra-1,3,5(10)-trien-16-yl]methyl}benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.74 _cell.angle_gamma 90 _cell.entry_id 3HB4 _cell.length_a 123.08 _cell.length_b 43.7 _cell.length_c 60.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HB4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H31 N O3' _chem_comp.formula_weight 405.529 _chem_comp.id E2B _chem_comp.mon_nstd_flag . _chem_comp.name 3-{[(9beta,14beta,16alpha,17alpha)-3,17-dihydroxyestra-1,3,5(10)-trien-16-yl]methyl}benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N30 C28 E2B sing 83 n n C9 C10 E2B sing 84 n n C9 C15 E2B sing 85 n n C9 C8 E2B sing 86 n n C10 C11 E2B sing 87 n n C10 C12 E2B sing 88 n n C15 C14 E2B sing 89 n n C15 C16 E2B sing 90 n n C8 C7 E2B sing 91 n n C14 C13 E2B sing 92 n n C14 C18 E2B sing 93 n n C14 C20 E2B sing 94 n n C11 C6 E2B doub 95 n y C11 C1 E2B sing 96 n y C13 C12 E2B sing 97 n n C16 C17 E2B sing 98 n n C28 C24 E2B sing 99 n n C28 O29 E2B doub 100 n n C25 C24 E2B doub 101 n y C25 C26 E2B sing 102 n y C6 C7 E2B sing 103 n n C6 C5 E2B sing 104 n y C17 C18 E2B sing 105 n n C17 C21 E2B sing 106 n n C18 O19 E2B sing 107 n n C24 C23 E2B sing 108 n y C1 C2 E2B doub 109 n y C26 C27 E2B doub 110 n y C21 C22 E2B sing 111 n n C23 C22 E2B doub 112 n y C27 C22 E2B sing 113 n y C3 C5 E2B doub 114 n y C3 C2 E2B sing 115 n y C3 O4 E2B sing 116 n n N30 HN30 E2B sing 117 n n N30 HN3A E2B sing 118 n n C9 H9 E2B sing 119 n n C10 H10 E2B sing 120 n n C15 H15 E2B sing 121 n n C8 H8 E2B sing 122 n n C8 H8A E2B sing 123 n n C13 H13 E2B sing 124 n n C13 H13A E2B sing 125 n n C16 H16 E2B sing 126 n n C16 H16A E2B sing 127 n n C25 H25 E2B sing 128 n n C12 H12 E2B sing 129 n n C12 H12A E2B sing 130 n n C17 H17 E2B sing 131 n n C18 H18 E2B sing 132 n n C20 H20 E2B sing 133 n n C20 H20A E2B sing 134 n n C20 H20B E2B sing 135 n n C1 H1 E2B sing 136 n n C26 H26 E2B sing 137 n n C21 H21 E2B sing 138 n n C21 H21A E2B sing 139 n n C23 H23 E2B sing 140 n n C27 H27 E2B sing 141 n n C7 H7 E2B sing 142 n n C7 H7A E2B sing 143 n n C5 H5 E2B sing 144 n n C2 H2 E2B sing 145 n n O4 HO4 E2B sing 146 n n O19 HO19 E2B sing 147 n n # _atom_sites.entry_id 3HB4 _atom_sites.fract_transf_matrix[1][1] 0.008125 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001541 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E2B X 1 700 700 E2B E2B . C 3 HOH X 1 901 901 HOH HOH . C 3 HOH X 2 903 903 HOH HOH . C 3 HOH X 3 904 904 HOH HOH . C 3 HOH X 4 905 905 HOH HOH . C 3 HOH X 5 906 906 HOH HOH . C 3 HOH X 6 908 908 HOH HOH . C 3 HOH X 7 909 909 HOH HOH . C 3 HOH X 8 911 911 HOH HOH . C 3 HOH X 9 912 912 HOH HOH . C 3 HOH X 10 913 913 HOH HOH . C 3 HOH X 11 914 914 HOH HOH . C 3 HOH X 12 915 915 HOH HOH . C 3 HOH X 13 916 916 HOH HOH . C 3 HOH X 14 918 918 HOH HOH . C 3 HOH X 15 919 919 HOH HOH . C 3 HOH X 16 920 920 HOH HOH . C 3 HOH X 17 921 921 HOH HOH . C 3 HOH X 18 922 922 HOH HOH . C 3 HOH X 19 923 923 HOH HOH . C 3 HOH X 20 924 924 HOH HOH . C 3 HOH X 21 925 925 HOH HOH . C 3 HOH X 22 928 928 HOH HOH . C 3 HOH X 23 929 929 HOH HOH . C 3 HOH X 24 930 930 HOH HOH . C 3 HOH X 25 934 934 HOH HOH . C 3 HOH X 26 935 935 HOH HOH . C 3 HOH X 27 938 938 HOH HOH . C 3 HOH X 28 940 940 HOH HOH . C 3 HOH X 29 943 943 HOH HOH . C 3 HOH X 30 944 944 HOH HOH . C 3 HOH X 31 945 945 HOH HOH . C 3 HOH X 32 946 946 HOH HOH . C 3 HOH X 33 948 948 HOH HOH . C 3 HOH X 34 953 953 HOH HOH . C 3 HOH X 35 954 954 HOH HOH . C 3 HOH X 36 955 955 HOH HOH . C 3 HOH X 37 958 958 HOH HOH . C 3 HOH X 38 961 961 HOH HOH . C 3 HOH X 39 962 962 HOH HOH . C 3 HOH X 40 963 963 HOH HOH . C 3 HOH X 41 971 971 HOH HOH . C 3 HOH X 42 1014 1014 HOH HOH . C 3 HOH X 43 1015 1015 HOH HOH . C 3 HOH X 44 1020 1020 HOH HOH . C 3 HOH X 45 1034 1034 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N30 E2B . . . B 2 14.517 -0.784 -8.29 1 42.72 ? N30 E2B 700 X 1 HETATM 2 C C9 E2B . . . B 2 10.918 8.782 -11.523 1 28.61 ? C9 E2B 700 X 1 HETATM 3 C C10 E2B . . . B 2 10.945 10.22 -11.059 1 28.08 ? C10 E2B 700 X 1 HETATM 4 C C15 E2B . . . B 2 11.67 7.929 -10.48 1 30.93 ? C15 E2B 700 X 1 HETATM 5 C C8 E2B . . . B 2 11.379 8.636 -12.992 1 29.84 ? C8 E2B 700 X 1 HETATM 6 C C14 E2B . . . B 2 11.257 8.094 -8.995 1 34 ? C14 E2B 700 X 1 HETATM 7 C C11 E2B . . . B 2 10.227 11.083 -12.044 1 27.16 ? C11 E2B 700 X 1 HETATM 8 C C13 E2B . . . B 2 11.375 9.569 -8.58 1 26.94 ? C13 E2B 700 X 1 HETATM 9 C C16 E2B . . . B 2 11.562 6.427 -10.642 1 34.17 ? C16 E2B 700 X 1 HETATM 10 C C28 E2B . . . B 2 13.686 0.175 -7.83 1 46.32 ? C28 E2B 700 X 1 HETATM 11 C C25 E2B . . . B 2 11.84 0.436 -9.771 1 49.05 ? C25 E2B 700 X 1 HETATM 12 C C6 E2B . . . B 2 9.928 10.621 -13.448 1 31.23 ? C6 E2B 700 X 1 HETATM 13 C C12 E2B . . . B 2 10.537 10.432 -9.548 1 26.9 ? C12 E2B 700 X 1 HETATM 14 C C17 E2B . . . B 2 12.304 5.916 -9.415 1 38.44 ? C17 E2B 700 X 1 HETATM 15 C C18 E2B . . . B 2 12.251 7.098 -8.418 1 36.05 ? C18 E2B 700 X 1 HETATM 16 C C20 E2B . . . B 2 9.797 7.57 -8.741 1 30.99 ? C20 E2B 700 X 1 HETATM 17 C C24 E2B . . . B 2 12.687 0.969 -8.742 1 47.72 ? C24 E2B 700 X 1 HETATM 18 C C1 E2B . . . B 2 9.843 12.375 -11.652 1 25.55 ? C1 E2B 700 X 1 HETATM 19 C C26 E2B . . . B 2 10.913 1.208 -10.532 1 45.3 ? C26 E2B 700 X 1 HETATM 20 C C21 E2B . . . B 2 11.631 4.662 -8.884 1 43.41 ? C21 E2B 700 X 1 HETATM 21 C C23 E2B . . . B 2 12.569 2.36 -8.565 1 49.47 ? C23 E2B 700 X 1 HETATM 22 C C27 E2B . . . B 2 10.856 2.586 -10.278 1 44.39 ? C27 E2B 700 X 1 HETATM 23 C C7 E2B . . . B 2 10.321 9.208 -13.949 1 27.39 ? C7 E2B 700 X 1 HETATM 24 C C3 E2B . . . B 2 8.92 12.846 -13.866 1 29.47 ? C3 E2B 700 X 1 HETATM 25 C C22 E2B . . . B 2 11.71 3.188 -9.329 1 46.3 ? C22 E2B 700 X 1 HETATM 26 C C5 E2B . . . B 2 9.27 11.544 -14.306 1 28.22 ? C5 E2B 700 X 1 HETATM 27 C C2 E2B . . . B 2 9.224 13.246 -12.547 1 26.57 ? C2 E2B 700 X 1 HETATM 28 O O4 E2B . . . B 2 8.271 13.747 -14.718 1 28.14 ? O4 E2B 700 X 1 HETATM 29 O O29 E2B . . . B 2 13.708 0.405 -6.596 1 45.82 ? O29 E2B 700 X 1 HETATM 30 O O19 E2B . . . B 2 11.955 6.689 -7.076 1 39.36 ? O19 E2B 700 X 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 597 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #