data_3HB9 # _model_server_result.job_id sxz6f4Zeh4t7ICRE15rTkw _model_server_result.datetime_utc '2024-11-15 05:52:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hb9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":2100}' # _entry.id 3HB9 # _exptl.entry_id 3HB9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.65 _cell.angle_gamma 90 _cell.entry_id 3HB9 _cell.length_a 96.566 _cell.length_b 256.763 _cell.length_c 126.485 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HB9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 1112 A LYS 1144 1_555 E C11 BTI . A BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B NZ LYS 1112 B LYS 1144 1_555 H C11 BTI . B BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 C NZ LYS 1112 C LYS 1144 1_555 J C11 BTI . C BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 C OD1 ASP 542 C ASP 572 1_555 L MN MN . C MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 D OD1 ASP 542 D ASP 572 1_555 N MN MN . D MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HB9 _atom_sites.fract_transf_matrix[1][1] 0.010356 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003697 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003895 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BTI A 1 2000 2000 BTI BTI . F 3 ADP A 1 2100 2100 ADP ADP . G 4 MN A 1 2002 2002 MN MN . H 2 BTI B 1 2000 2000 BTI BTI . I 4 MN B 1 2002 2002 MN MN . J 2 BTI C 1 2000 2000 BTI BTI . K 3 ADP C 1 2100 2100 ADP ADP . L 4 MN C 1 2002 2002 MN MN . M 2 BTI C 1 1183 2000 BTI BTI . N 4 MN D 1 2002 2002 MN MN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . K 3 36.032 64.15 -19.288 1 78.95 ? PB ADP 2100 C 1 HETATM 2 O O1B ADP . . . K 3 36.188 64.063 -20.787 1 79 ? O1B ADP 2100 C 1 HETATM 3 O O2B ADP . . . K 3 35.367 65.419 -18.824 1 78.98 ? O2B ADP 2100 C 1 HETATM 4 O O3B ADP . . . K 3 37.248 63.731 -18.49 1 79.19 ? O3B ADP 2100 C 1 HETATM 5 P PA ADP . . . K 3 34.908 61.615 -19.681 1 78.38 ? PA ADP 2100 C 1 HETATM 6 O O1A ADP . . . K 3 36.328 61.18 -19.969 1 78.34 ? O1A ADP 2100 C 1 HETATM 7 O O2A ADP . . . K 3 33.912 61.737 -20.808 1 78.49 ? O2A ADP 2100 C 1 HETATM 8 O O3A ADP . . . K 3 34.944 63.03 -18.922 1 78.67 ? O3A ADP 2100 C 1 HETATM 9 O O5' ADP . . . K 3 34.298 60.667 -18.532 1 78.28 ? O5' ADP 2100 C 1 HETATM 10 C C5' ADP . . . K 3 34.931 60.641 -17.254 1 78.27 ? C5' ADP 2100 C 1 HETATM 11 C C4' ADP . . . K 3 34.141 59.805 -16.257 1 78.31 ? C4' ADP 2100 C 1 HETATM 12 O O4' ADP . . . K 3 32.731 60.017 -16.369 1 78.26 ? O4' ADP 2100 C 1 HETATM 13 C C3' ADP . . . K 3 34.349 58.314 -16.444 1 78.24 ? C3' ADP 2100 C 1 HETATM 14 O O3' ADP . . . K 3 35.512 57.858 -15.752 1 78.2 ? O3' ADP 2100 C 1 HETATM 15 C C2' ADP . . . K 3 33.074 57.715 -15.886 1 78.27 ? C2' ADP 2100 C 1 HETATM 16 O O2' ADP . . . K 3 33.174 57.446 -14.484 1 78.14 ? O2' ADP 2100 C 1 HETATM 17 C C1' ADP . . . K 3 32.028 58.793 -16.119 1 78.6 ? C1' ADP 2100 C 1 HETATM 18 N N9 ADP . . . K 3 31.229 58.396 -17.308 1 78.81 ? N9 ADP 2100 C 1 HETATM 19 C C8 ADP . . . K 3 31.252 59.003 -18.511 1 78.75 ? C8 ADP 2100 C 1 HETATM 20 N N7 ADP . . . K 3 30.416 58.389 -19.383 1 78.73 ? N7 ADP 2100 C 1 HETATM 21 C C5 ADP . . . K 3 29.84 57.358 -18.741 1 78.79 ? C5 ADP 2100 C 1 HETATM 22 C C6 ADP . . . K 3 28.853 56.302 -19.078 1 78.73 ? C6 ADP 2100 C 1 HETATM 23 N N6 ADP . . . K 3 28.311 56.23 -20.317 1 78.76 ? N6 ADP 2100 C 1 HETATM 24 N N1 ADP . . . K 3 28.517 55.416 -18.109 1 78.79 ? N1 ADP 2100 C 1 HETATM 25 C C2 ADP . . . K 3 29.056 55.477 -16.873 1 78.82 ? C2 ADP 2100 C 1 HETATM 26 N N3 ADP . . . K 3 29.952 56.412 -16.497 1 78.82 ? N3 ADP 2100 C 1 HETATM 27 C C4 ADP . . . K 3 30.38 57.362 -17.37 1 78.82 ? C4 ADP 2100 C 1 # _model_server_stats.io_time_ms 266 _model_server_stats.parse_time_ms 64 _model_server_stats.create_model_time_ms 194 _model_server_stats.query_time_ms 1147 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 27 #