data_3HBB
#
_model_server_result.job_id            K7ioAULk0bl7G-oagd2mHw 
_model_server_result.datetime_utc      '2024-11-23 12:28:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hbb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":906}' 
#
_entry.id    3HBB 
#
_exptl.entry_id    3HBB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HBB 
_cell.length_a            176.571 
_cell.length_b            176.571 
_cell.length_c            251.848 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HBB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K,L,M,N,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,DB 1 1 
B,C,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,BB,CB 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 M N N 
? 5 N N N 
? 5 V N N 
? 5 HA N N 
? 5 IA N N 
? 5 JA N N 
? 5 KA N N 
? 5 VA N N 
? 5 WA N N 
? 5 XA N N 
? 5 YA N N 
? 5 ZA N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3HBB 
_atom_sites.fract_transf_matrix[1][1]    0.005663 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005663 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003971 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 601 601 NAP NAP . 
F 3 TMQ A 1 611 611 TMQ TMQ . 
G 4 SO4 A 1 701 701 SO4 SO4 . 
H 4 SO4 A 1 805 805 SO4 SO4 . 
I 4 SO4 A 1 813 813 SO4 SO4 . 
J 4 SO4 A 1 814 814 SO4 SO4 . 
K 4 SO4 A 1 815 815 SO4 SO4 . 
L 4 SO4 A 1 817 817 SO4 SO4 . 
M 5 EDO A 1 902 902 EDO EDO . 
N 5 EDO A 1 904 904 EDO EDO . 
O 2 NAP B 1 602 602 NAP NAP . 
P 3 TMQ B 1 612 612 TMQ TMQ . 
Q 4 SO4 B 1 806 806 SO4 SO4 . 
R 4 SO4 B 1 809 809 SO4 SO4 . 
S 4 SO4 B 1 818 818 SO4 SO4 . 
T 4 SO4 B 1 821 821 SO4 SO4 . 
U 4 SO4 B 1 823 823 SO4 SO4 . 
V 5 EDO B 1 906 906 EDO EDO . 
W 4 SO4 C 1 702 702 SO4 SO4 . 
X 2 NAP C 1 603 603 NAP NAP . 
Y 3 TMQ C 1 613 613 TMQ TMQ . 
Z 4 SO4 C 1 703 703 SO4 SO4 . 
AA 4 SO4 C 1 802 802 SO4 SO4 . 
BA 4 SO4 C 1 807 807 SO4 SO4 . 
CA 4 SO4 C 1 808 808 SO4 SO4 . 
DA 4 SO4 C 1 812 812 SO4 SO4 . 
EA 4 SO4 C 1 816 816 SO4 SO4 . 
FA 4 SO4 C 1 822 822 SO4 SO4 . 
GA 4 SO4 C 1 824 824 SO4 SO4 . 
HA 5 EDO C 1 908 908 EDO EDO . 
IA 5 EDO C 1 909 909 EDO EDO . 
JA 5 EDO C 1 910 910 EDO EDO . 
KA 5 EDO C 1 912 912 EDO EDO . 
LA 2 NAP D 1 604 604 NAP NAP . 
MA 3 TMQ D 1 614 614 TMQ TMQ . 
NA 4 SO4 D 1 704 704 SO4 SO4 . 
OA 4 SO4 D 1 801 801 SO4 SO4 . 
PA 4 SO4 D 1 803 803 SO4 SO4 . 
QA 4 SO4 D 1 804 804 SO4 SO4 . 
RA 4 SO4 D 1 810 810 SO4 SO4 . 
SA 4 SO4 D 1 811 811 SO4 SO4 . 
TA 4 SO4 D 1 819 819 SO4 SO4 . 
UA 4 SO4 D 1 820 820 SO4 SO4 . 
VA 5 EDO D 1 901 901 EDO EDO . 
WA 5 EDO D 1 903 903 EDO EDO . 
XA 5 EDO D 1 905 905 EDO EDO . 
YA 5 EDO D 1 907 907 EDO EDO . 
ZA 5 EDO D 1 911 911 EDO EDO . 
AB 6 HOH A 1 522 522 HOH HOH . 
AB 6 HOH A 2 523 523 HOH HOH . 
AB 6 HOH A 3 524 524 HOH HOH . 
AB 6 HOH A 4 525 525 HOH HOH . 
AB 6 HOH A 5 526 526 HOH HOH . 
AB 6 HOH A 6 527 527 HOH HOH . 
AB 6 HOH A 7 528 528 HOH HOH . 
AB 6 HOH A 8 529 529 HOH HOH . 
AB 6 HOH A 9 530 530 HOH HOH . 
AB 6 HOH A 10 531 531 HOH HOH . 
AB 6 HOH A 11 532 532 HOH HOH . 
AB 6 HOH A 12 533 533 HOH HOH . 
AB 6 HOH A 13 534 534 HOH HOH . 
AB 6 HOH A 14 535 535 HOH HOH . 
AB 6 HOH A 15 536 536 HOH HOH . 
AB 6 HOH A 16 537 537 HOH HOH . 
AB 6 HOH A 17 538 538 HOH HOH . 
AB 6 HOH A 18 539 539 HOH HOH . 
AB 6 HOH A 19 540 540 HOH HOH . 
AB 6 HOH A 20 541 541 HOH HOH . 
AB 6 HOH A 21 542 542 HOH HOH . 
AB 6 HOH A 22 543 543 HOH HOH . 
AB 6 HOH A 23 544 544 HOH HOH . 
AB 6 HOH A 24 545 545 HOH HOH . 
AB 6 HOH A 25 546 546 HOH HOH . 
AB 6 HOH A 26 547 547 HOH HOH . 
AB 6 HOH A 27 548 548 HOH HOH . 
AB 6 HOH A 28 549 549 HOH HOH . 
AB 6 HOH A 29 550 550 HOH HOH . 
AB 6 HOH A 30 551 551 HOH HOH . 
AB 6 HOH A 31 552 552 HOH HOH . 
AB 6 HOH A 32 553 553 HOH HOH . 
AB 6 HOH A 33 554 554 HOH HOH . 
AB 6 HOH A 34 555 555 HOH HOH . 
AB 6 HOH A 35 556 556 HOH HOH . 
AB 6 HOH A 36 557 557 HOH HOH . 
AB 6 HOH A 37 558 558 HOH HOH . 
AB 6 HOH A 38 559 559 HOH HOH . 
AB 6 HOH A 39 560 560 HOH HOH . 
AB 6 HOH A 40 561 561 HOH HOH . 
AB 6 HOH A 41 562 562 HOH HOH . 
AB 6 HOH A 42 563 563 HOH HOH . 
AB 6 HOH A 43 564 564 HOH HOH . 
BB 6 HOH B 1 522 522 HOH HOH . 
BB 6 HOH B 2 523 523 HOH HOH . 
BB 6 HOH B 3 524 524 HOH HOH . 
BB 6 HOH B 4 525 525 HOH HOH . 
BB 6 HOH B 5 526 526 HOH HOH . 
BB 6 HOH B 6 527 527 HOH HOH . 
BB 6 HOH B 7 528 528 HOH HOH . 
BB 6 HOH B 8 529 529 HOH HOH . 
BB 6 HOH B 9 530 530 HOH HOH . 
BB 6 HOH B 10 531 531 HOH HOH . 
BB 6 HOH B 11 532 532 HOH HOH . 
BB 6 HOH B 12 533 533 HOH HOH . 
BB 6 HOH B 13 534 534 HOH HOH . 
BB 6 HOH B 14 535 535 HOH HOH . 
BB 6 HOH B 15 536 536 HOH HOH . 
BB 6 HOH B 16 537 537 HOH HOH . 
BB 6 HOH B 17 538 538 HOH HOH . 
BB 6 HOH B 18 539 539 HOH HOH . 
BB 6 HOH B 19 540 540 HOH HOH . 
BB 6 HOH B 20 541 541 HOH HOH . 
BB 6 HOH B 21 542 542 HOH HOH . 
BB 6 HOH B 22 543 543 HOH HOH . 
BB 6 HOH B 23 544 544 HOH HOH . 
BB 6 HOH B 24 545 545 HOH HOH . 
BB 6 HOH B 25 546 546 HOH HOH . 
BB 6 HOH B 26 547 547 HOH HOH . 
BB 6 HOH B 27 548 548 HOH HOH . 
BB 6 HOH B 28 549 549 HOH HOH . 
BB 6 HOH B 29 550 550 HOH HOH . 
BB 6 HOH B 30 551 551 HOH HOH . 
BB 6 HOH B 31 552 552 HOH HOH . 
BB 6 HOH B 32 554 554 HOH HOH . 
BB 6 HOH B 33 555 555 HOH HOH . 
BB 6 HOH B 34 556 556 HOH HOH . 
BB 6 HOH B 35 557 557 HOH HOH . 
BB 6 HOH B 36 558 558 HOH HOH . 
BB 6 HOH B 37 559 559 HOH HOH . 
BB 6 HOH B 38 560 560 HOH HOH . 
BB 6 HOH B 39 561 561 HOH HOH . 
BB 6 HOH B 40 562 562 HOH HOH . 
BB 6 HOH B 41 563 563 HOH HOH . 
BB 6 HOH B 42 564 564 HOH HOH . 
BB 6 HOH B 43 565 565 HOH HOH . 
BB 6 HOH B 44 566 566 HOH HOH . 
BB 6 HOH B 45 567 567 HOH HOH . 
CB 6 HOH C 1 522 522 HOH HOH . 
CB 6 HOH C 2 523 523 HOH HOH . 
CB 6 HOH C 3 524 524 HOH HOH . 
CB 6 HOH C 4 525 525 HOH HOH . 
CB 6 HOH C 5 526 526 HOH HOH . 
CB 6 HOH C 6 527 527 HOH HOH . 
CB 6 HOH C 7 528 528 HOH HOH . 
CB 6 HOH C 8 529 529 HOH HOH . 
CB 6 HOH C 9 530 530 HOH HOH . 
CB 6 HOH C 10 531 531 HOH HOH . 
CB 6 HOH C 11 532 532 HOH HOH . 
CB 6 HOH C 12 533 533 HOH HOH . 
CB 6 HOH C 13 534 534 HOH HOH . 
CB 6 HOH C 14 535 535 HOH HOH . 
CB 6 HOH C 15 536 536 HOH HOH . 
CB 6 HOH C 16 537 537 HOH HOH . 
CB 6 HOH C 17 538 538 HOH HOH . 
CB 6 HOH C 18 539 539 HOH HOH . 
CB 6 HOH C 19 540 540 HOH HOH . 
CB 6 HOH C 20 541 541 HOH HOH . 
CB 6 HOH C 21 542 542 HOH HOH . 
CB 6 HOH C 22 543 543 HOH HOH . 
CB 6 HOH C 23 544 544 HOH HOH . 
CB 6 HOH C 24 545 545 HOH HOH . 
CB 6 HOH C 25 546 546 HOH HOH . 
CB 6 HOH C 26 547 547 HOH HOH . 
CB 6 HOH C 27 548 548 HOH HOH . 
CB 6 HOH C 28 549 549 HOH HOH . 
CB 6 HOH C 29 550 550 HOH HOH . 
CB 6 HOH C 30 551 551 HOH HOH . 
CB 6 HOH C 31 552 552 HOH HOH . 
CB 6 HOH C 32 553 553 HOH HOH . 
CB 6 HOH C 33 554 554 HOH HOH . 
CB 6 HOH C 34 555 555 HOH HOH . 
CB 6 HOH C 35 556 556 HOH HOH . 
CB 6 HOH C 36 557 557 HOH HOH . 
CB 6 HOH C 37 558 558 HOH HOH . 
CB 6 HOH C 38 559 559 HOH HOH . 
CB 6 HOH C 39 560 560 HOH HOH . 
CB 6 HOH C 40 561 561 HOH HOH . 
CB 6 HOH C 41 562 562 HOH HOH . 
CB 6 HOH C 42 563 563 HOH HOH . 
CB 6 HOH C 43 564 564 HOH HOH . 
CB 6 HOH C 44 565 565 HOH HOH . 
CB 6 HOH C 45 566 566 HOH HOH . 
CB 6 HOH C 46 567 567 HOH HOH . 
CB 6 HOH C 47 568 568 HOH HOH . 
CB 6 HOH C 48 569 569 HOH HOH . 
CB 6 HOH C 49 570 570 HOH HOH . 
CB 6 HOH C 50 571 571 HOH HOH . 
CB 6 HOH C 51 572 572 HOH HOH . 
CB 6 HOH C 52 573 573 HOH HOH . 
CB 6 HOH C 53 574 574 HOH HOH . 
CB 6 HOH C 54 575 575 HOH HOH . 
CB 6 HOH C 55 576 576 HOH HOH . 
CB 6 HOH C 56 577 577 HOH HOH . 
DB 6 HOH D 1 522 522 HOH HOH . 
DB 6 HOH D 2 523 523 HOH HOH . 
DB 6 HOH D 3 524 524 HOH HOH . 
DB 6 HOH D 4 525 525 HOH HOH . 
DB 6 HOH D 5 526 526 HOH HOH . 
DB 6 HOH D 6 527 527 HOH HOH . 
DB 6 HOH D 7 528 528 HOH HOH . 
DB 6 HOH D 8 529 529 HOH HOH . 
DB 6 HOH D 9 530 530 HOH HOH . 
DB 6 HOH D 10 531 531 HOH HOH . 
DB 6 HOH D 11 532 532 HOH HOH . 
DB 6 HOH D 12 533 533 HOH HOH . 
DB 6 HOH D 13 534 534 HOH HOH . 
DB 6 HOH D 14 535 535 HOH HOH . 
DB 6 HOH D 15 536 536 HOH HOH . 
DB 6 HOH D 16 537 537 HOH HOH . 
DB 6 HOH D 17 538 538 HOH HOH . 
DB 6 HOH D 18 539 539 HOH HOH . 
DB 6 HOH D 19 540 540 HOH HOH . 
DB 6 HOH D 20 541 541 HOH HOH . 
DB 6 HOH D 21 542 542 HOH HOH . 
DB 6 HOH D 22 543 543 HOH HOH . 
DB 6 HOH D 23 544 544 HOH HOH . 
DB 6 HOH D 24 545 545 HOH HOH . 
DB 6 HOH D 25 546 546 HOH HOH . 
DB 6 HOH D 26 547 547 HOH HOH . 
DB 6 HOH D 27 548 548 HOH HOH . 
DB 6 HOH D 28 549 549 HOH HOH . 
DB 6 HOH D 29 550 550 HOH HOH . 
DB 6 HOH D 30 551 551 HOH HOH . 
DB 6 HOH D 31 552 552 HOH HOH . 
DB 6 HOH D 32 553 553 HOH HOH . 
DB 6 HOH D 33 554 554 HOH HOH . 
DB 6 HOH D 34 555 555 HOH HOH . 
DB 6 HOH D 35 556 556 HOH HOH . 
DB 6 HOH D 36 557 557 HOH HOH . 
DB 6 HOH D 37 558 558 HOH HOH . 
DB 6 HOH D 38 559 559 HOH HOH . 
DB 6 HOH D 39 560 560 HOH HOH . 
DB 6 HOH D 40 561 561 HOH HOH . 
DB 6 HOH D 41 562 562 HOH HOH . 
DB 6 HOH D 42 563 563 HOH HOH . 
DB 6 HOH D 43 564 564 HOH HOH . 
DB 6 HOH D 44 565 565 HOH HOH . 
DB 6 HOH D 45 566 566 HOH HOH . 
DB 6 HOH D 46 567 567 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . V 5 32.421 21.548 18.63 1 67.37 ? C1 EDO 906 B 1 
HETATM 2 O O1 EDO . . . V 5 31.115 20.963 18.582 1 67.02 ? O1 EDO 906 B 1 
HETATM 3 C C2 EDO . . . V 5 32.706 21.993 20.062 1 68.09 ? C2 EDO 906 B 1 
HETATM 4 O O2 EDO . . . V 5 32.604 20.875 20.958 1 68.12 ? O2 EDO 906 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#