data_3HBC # _model_server_result.job_id xarZ6aLtPYpmB2aUFwJZhg _model_server_result.datetime_utc '2024-10-12 19:28:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hbc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":5}' # _entry.id 3HBC # _exptl.entry_id 3HBC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HBC _cell.length_a 74.281 _cell.length_b 135.208 _cell.length_c 167.589 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HBC _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_556 x,-y+1/2,-z+3/2 1 0 0 0 -1 0 0 0 -1 0 67.604 251.3835 3 'crystal symmetry operation' 11_556 -x+1/2,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 37.1405 0 251.3835 4 'crystal symmetry operation' 14_555 -x+1/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 37.1405 67.604 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 14 A ARG 36 1_555 A N MSE 15 A MSE 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 15 A MSE 37 1_555 A N VAL 16 A VAL 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C THR 21 A THR 43 1_555 A N MSE 22 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 22 A MSE 44 1_555 A N ASP 23 A ASP 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C ILE 28 A ILE 50 1_555 A N MSE 29 A MSE 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 29 A MSE 51 1_555 A N SER 30 A SER 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C GLY 38 A GLY 60 1_555 A N MSE 39 A MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale8 A C MSE 39 A MSE 61 1_555 A N GLN 40 A GLN 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C GLY 71 A GLY 93 1_555 A N MSE 72 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C MSE 72 A MSE 94 1_555 A N ASN 73 A ASN 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 A C ALA 98 A ALA 120 1_555 A N MSE 99 A MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 A C MSE 99 A MSE 121 1_555 A N GLY 100 A GLY 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 A C GLU 121 A GLU 143 1_555 A N MSE 122 A MSE 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 A C MSE 122 A MSE 144 1_555 A N LYS 123 A LYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale15 A C ARG 133 A ARG 155 1_555 A N MSE 134 A MSE 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale16 A C HIS 144 A HIS 166 1_555 A N MSE 145 A MSE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale17 A C MSE 145 A MSE 167 1_555 A N ALA 146 A ALA 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale18 A C VAL 174 A VAL 196 1_555 A N MSE 175 A MSE 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale19 A C MSE 175 A MSE 197 1_555 A N THR 176 A THR 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale20 A C GLN 198 A GLN 220 1_555 A N MSE 199 A MSE 221 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.331 ? covale ? covale21 A C GLN 198 A GLN 220 1_555 A N MSE 199 A MSE 221 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.325 ? covale ? covale22 A C MSE 199 A MSE 221 1_555 A N LEU 200 A LEU 222 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale23 A C MSE 199 A MSE 221 1_555 A N LEU 200 A LEU 222 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale24 A C VAL 236 A VAL 258 1_555 A N MSE 237 A MSE 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale25 A C MSE 237 A MSE 259 1_555 A N ARG 238 A ARG 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 3HBC _atom_sites.fract_transf_matrix[1][1] 0.013462 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005967 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 2 2 GOL GOL . C 2 GOL A 1 3 3 GOL GOL . D 2 GOL A 1 4 4 GOL GOL . E 2 GOL A 1 5 5 GOL GOL . F 3 EDO A 1 6 6 EDO EDO . G 3 EDO A 1 7 7 EDO EDO . H 3 EDO A 1 8 8 EDO EDO . I 3 EDO A 1 9 9 EDO EDO . J 4 HOH A 1 1 1 HOH HOH . J 4 HOH A 2 10 10 HOH HOH . J 4 HOH A 3 11 11 HOH HOH . J 4 HOH A 4 12 12 HOH HOH . J 4 HOH A 5 13 13 HOH HOH . J 4 HOH A 6 14 14 HOH HOH . J 4 HOH A 7 15 15 HOH HOH . J 4 HOH A 8 16 16 HOH HOH . J 4 HOH A 9 17 17 HOH HOH . J 4 HOH A 10 18 18 HOH HOH . J 4 HOH A 11 19 19 HOH HOH . J 4 HOH A 12 20 20 HOH HOH . J 4 HOH A 13 21 21 HOH HOH . J 4 HOH A 14 22 22 HOH HOH . J 4 HOH A 15 343 2 HOH HOH . J 4 HOH A 16 344 3 HOH HOH . J 4 HOH A 17 345 4 HOH HOH . J 4 HOH A 18 346 5 HOH HOH . J 4 HOH A 19 347 6 HOH HOH . J 4 HOH A 20 348 7 HOH HOH . J 4 HOH A 21 349 8 HOH HOH . J 4 HOH A 22 350 9 HOH HOH . J 4 HOH A 23 351 23 HOH HOH . J 4 HOH A 24 352 24 HOH HOH . J 4 HOH A 25 353 25 HOH HOH . J 4 HOH A 26 354 26 HOH HOH . J 4 HOH A 27 355 27 HOH HOH . J 4 HOH A 28 356 28 HOH HOH . J 4 HOH A 29 357 29 HOH HOH . J 4 HOH A 30 358 30 HOH HOH . J 4 HOH A 31 359 31 HOH HOH . J 4 HOH A 32 360 32 HOH HOH . J 4 HOH A 33 361 33 HOH HOH . J 4 HOH A 34 362 34 HOH HOH . J 4 HOH A 35 363 35 HOH HOH . J 4 HOH A 36 364 36 HOH HOH . J 4 HOH A 37 365 37 HOH HOH . J 4 HOH A 38 366 38 HOH HOH . J 4 HOH A 39 367 39 HOH HOH . J 4 HOH A 40 368 40 HOH HOH . J 4 HOH A 41 369 41 HOH HOH . J 4 HOH A 42 370 42 HOH HOH . J 4 HOH A 43 371 43 HOH HOH . J 4 HOH A 44 372 44 HOH HOH . J 4 HOH A 45 373 45 HOH HOH . J 4 HOH A 46 374 46 HOH HOH . J 4 HOH A 47 375 47 HOH HOH . J 4 HOH A 48 376 48 HOH HOH . J 4 HOH A 49 377 49 HOH HOH . J 4 HOH A 50 378 50 HOH HOH . J 4 HOH A 51 379 51 HOH HOH . J 4 HOH A 52 380 52 HOH HOH . J 4 HOH A 53 381 53 HOH HOH . J 4 HOH A 54 382 54 HOH HOH . J 4 HOH A 55 383 55 HOH HOH . J 4 HOH A 56 384 56 HOH HOH . J 4 HOH A 57 385 57 HOH HOH . J 4 HOH A 58 386 58 HOH HOH . J 4 HOH A 59 387 59 HOH HOH . J 4 HOH A 60 388 60 HOH HOH . J 4 HOH A 61 389 61 HOH HOH . J 4 HOH A 62 390 62 HOH HOH . J 4 HOH A 63 391 63 HOH HOH . J 4 HOH A 64 392 64 HOH HOH . J 4 HOH A 65 393 65 HOH HOH . J 4 HOH A 66 394 66 HOH HOH . J 4 HOH A 67 395 67 HOH HOH . J 4 HOH A 68 396 68 HOH HOH . J 4 HOH A 69 397 69 HOH HOH . J 4 HOH A 70 398 70 HOH HOH . J 4 HOH A 71 399 71 HOH HOH . J 4 HOH A 72 400 72 HOH HOH . J 4 HOH A 73 401 73 HOH HOH . J 4 HOH A 74 402 74 HOH HOH . J 4 HOH A 75 403 75 HOH HOH . J 4 HOH A 76 404 76 HOH HOH . J 4 HOH A 77 405 77 HOH HOH . J 4 HOH A 78 406 78 HOH HOH . J 4 HOH A 79 407 79 HOH HOH . J 4 HOH A 80 408 80 HOH HOH . J 4 HOH A 81 409 81 HOH HOH . J 4 HOH A 82 410 82 HOH HOH . J 4 HOH A 83 411 83 HOH HOH . J 4 HOH A 84 412 84 HOH HOH . J 4 HOH A 85 413 85 HOH HOH . J 4 HOH A 86 414 86 HOH HOH . J 4 HOH A 87 415 87 HOH HOH . J 4 HOH A 88 416 88 HOH HOH . J 4 HOH A 89 417 89 HOH HOH . J 4 HOH A 90 418 90 HOH HOH . J 4 HOH A 91 419 91 HOH HOH . J 4 HOH A 92 420 92 HOH HOH . J 4 HOH A 93 421 93 HOH HOH . J 4 HOH A 94 422 94 HOH HOH . J 4 HOH A 95 423 95 HOH HOH . J 4 HOH A 96 424 96 HOH HOH . J 4 HOH A 97 425 97 HOH HOH . J 4 HOH A 98 426 98 HOH HOH . J 4 HOH A 99 427 99 HOH HOH . J 4 HOH A 100 428 100 HOH HOH . J 4 HOH A 101 429 101 HOH HOH . J 4 HOH A 102 430 102 HOH HOH . J 4 HOH A 103 431 103 HOH HOH . J 4 HOH A 104 432 104 HOH HOH . J 4 HOH A 105 433 105 HOH HOH . J 4 HOH A 106 434 106 HOH HOH . J 4 HOH A 107 435 107 HOH HOH . J 4 HOH A 108 436 108 HOH HOH . J 4 HOH A 109 437 109 HOH HOH . J 4 HOH A 110 438 110 HOH HOH . J 4 HOH A 111 439 111 HOH HOH . J 4 HOH A 112 440 112 HOH HOH . J 4 HOH A 113 441 113 HOH HOH . J 4 HOH A 114 442 114 HOH HOH . J 4 HOH A 115 443 115 HOH HOH . J 4 HOH A 116 444 116 HOH HOH . J 4 HOH A 117 445 117 HOH HOH . J 4 HOH A 118 446 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 4.011 3.991 95.008 1 81.25 ? C1 GOL 5 A 1 HETATM 2 O O1 GOL . . . E 2 4.088 3.2 93.837 1 78.03 ? O1 GOL 5 A 1 HETATM 3 C C2 GOL . . . E 2 3.074 5.18 94.783 1 84.31 ? C2 GOL 5 A 1 HETATM 4 O O2 GOL . . . E 2 3.798 6.392 94.774 1 79 ? O2 GOL 5 A 1 HETATM 5 C C3 GOL . . . E 2 1.996 5.264 95.86 1 86.78 ? C3 GOL 5 A 1 HETATM 6 O O3 GOL . . . E 2 1.466 6.575 95.878 1 79.67 ? O3 GOL 5 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #