data_3HBG # _model_server_result.job_id w01J50vzTeXSb278EIl7LQ _model_server_result.datetime_utc '2025-03-06 03:45:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hbg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3HBG # _exptl.entry_id 3HBG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 395.352 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HBG _cell.length_a 86.468 _cell.length_b 131.517 _cell.length_c 98.884 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 239 A CYS 239 1_555 A SG CYS 328 A CYS 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 B S1' MTE . A MTE 501 1_555 C MO1 MOM . A MOM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc2 B S2' MTE . A MTE 501 1_555 C MO1 MOM . A MOM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? # _chem_comp.formula 'C10 H14 N5 O6 P S2' _chem_comp.formula_weight 395.352 _chem_comp.id MTE _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTE doub 241 n y N1 C10 MTE sing 242 n y C2 N2 MTE sing 243 n n C2 N3 MTE sing 244 n y N2 HN21 MTE sing 245 n n N2 HN22 MTE sing 246 n n N3 C4 MTE sing 247 n y N3 HN3 MTE sing 248 n n C4 O4 MTE doub 249 n n C4 C9 MTE sing 250 n y N5 C6 MTE sing 251 n n N5 C9 MTE sing 252 n n N5 HN5 MTE sing 253 n n C6 C7 MTE sing 254 n n C6 C1' MTE sing 255 n n C6 H6 MTE sing 256 n n C7 N8 MTE sing 257 n n C7 O3' MTE sing 258 n n C7 H7 MTE sing 259 n n N8 C10 MTE sing 260 n n N8 HN8 MTE sing 261 n n C9 C10 MTE doub 262 n y C1' S1' MTE sing 263 n n C1' C2' MTE doub 264 n n S1' H1S MTE sing 265 n n C2' S2' MTE sing 266 n n C2' C3' MTE sing 267 n n S2' H2S MTE sing 268 n n C3' O3' MTE sing 269 n n C3' C4' MTE sing 270 n n C3' H3' MTE sing 271 n n C4' O4' MTE sing 272 n n C4' "H4'1" MTE sing 273 n n C4' "H4'2" MTE sing 274 n n O4' P MTE sing 275 n n P O1P MTE doub 276 n n P O2P MTE sing 277 n n P O3P MTE sing 278 n n O2P HOP2 MTE sing 279 n n O3P HOP3 MTE sing 280 n n # _atom_sites.entry_id 3HBG _atom_sites.fract_transf_matrix[1][1] 0.011565 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTE A 1 501 501 MTE MTE . C 3 MOM A 1 502 502 MOM MOM . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 10 HOH HOH . D 4 HOH A 11 611 11 HOH HOH . D 4 HOH A 12 612 12 HOH HOH . D 4 HOH A 13 613 13 HOH HOH . D 4 HOH A 14 614 14 HOH HOH . D 4 HOH A 15 615 15 HOH HOH . D 4 HOH A 16 616 16 HOH HOH . D 4 HOH A 17 617 17 HOH HOH . D 4 HOH A 18 618 18 HOH HOH . D 4 HOH A 19 619 19 HOH HOH . D 4 HOH A 20 620 20 HOH HOH . D 4 HOH A 21 621 21 HOH HOH . D 4 HOH A 22 622 22 HOH HOH . D 4 HOH A 23 623 23 HOH HOH . D 4 HOH A 24 624 24 HOH HOH . D 4 HOH A 25 625 25 HOH HOH . D 4 HOH A 26 626 26 HOH HOH . D 4 HOH A 27 627 27 HOH HOH . D 4 HOH A 28 628 28 HOH HOH . D 4 HOH A 29 629 29 HOH HOH . D 4 HOH A 30 630 30 HOH HOH . D 4 HOH A 31 631 31 HOH HOH . D 4 HOH A 32 632 32 HOH HOH . D 4 HOH A 33 633 33 HOH HOH . D 4 HOH A 34 634 34 HOH HOH . D 4 HOH A 35 635 35 HOH HOH . D 4 HOH A 36 636 36 HOH HOH . D 4 HOH A 37 637 37 HOH HOH . D 4 HOH A 38 638 38 HOH HOH . D 4 HOH A 39 639 39 HOH HOH . D 4 HOH A 40 640 40 HOH HOH . D 4 HOH A 41 641 41 HOH HOH . D 4 HOH A 42 642 42 HOH HOH . D 4 HOH A 43 643 43 HOH HOH . D 4 HOH A 44 644 44 HOH HOH . D 4 HOH A 45 645 45 HOH HOH . D 4 HOH A 46 646 46 HOH HOH . D 4 HOH A 47 647 47 HOH HOH . D 4 HOH A 48 648 48 HOH HOH . D 4 HOH A 49 649 49 HOH HOH . D 4 HOH A 50 650 50 HOH HOH . D 4 HOH A 51 651 51 HOH HOH . D 4 HOH A 52 652 52 HOH HOH . D 4 HOH A 53 653 53 HOH HOH . D 4 HOH A 54 654 54 HOH HOH . D 4 HOH A 55 655 55 HOH HOH . D 4 HOH A 56 656 56 HOH HOH . D 4 HOH A 57 657 57 HOH HOH . D 4 HOH A 58 658 58 HOH HOH . D 4 HOH A 59 659 59 HOH HOH . D 4 HOH A 60 660 60 HOH HOH . D 4 HOH A 61 661 61 HOH HOH . D 4 HOH A 62 662 62 HOH HOH . D 4 HOH A 63 663 63 HOH HOH . D 4 HOH A 64 664 64 HOH HOH . D 4 HOH A 65 665 65 HOH HOH . D 4 HOH A 66 666 66 HOH HOH . D 4 HOH A 67 667 67 HOH HOH . D 4 HOH A 68 668 68 HOH HOH . D 4 HOH A 69 669 69 HOH HOH . D 4 HOH A 70 670 70 HOH HOH . D 4 HOH A 71 671 71 HOH HOH . D 4 HOH A 72 672 72 HOH HOH . D 4 HOH A 73 673 73 HOH HOH . D 4 HOH A 74 674 74 HOH HOH . D 4 HOH A 75 675 75 HOH HOH . D 4 HOH A 76 676 76 HOH HOH . D 4 HOH A 77 677 77 HOH HOH . D 4 HOH A 78 678 78 HOH HOH . D 4 HOH A 79 679 79 HOH HOH . D 4 HOH A 80 680 80 HOH HOH . D 4 HOH A 81 681 81 HOH HOH . D 4 HOH A 82 682 82 HOH HOH . D 4 HOH A 83 683 83 HOH HOH . D 4 HOH A 84 684 84 HOH HOH . D 4 HOH A 85 685 85 HOH HOH . D 4 HOH A 86 686 86 HOH HOH . D 4 HOH A 87 687 87 HOH HOH . D 4 HOH A 88 688 88 HOH HOH . D 4 HOH A 89 689 89 HOH HOH . D 4 HOH A 90 690 90 HOH HOH . D 4 HOH A 91 691 91 HOH HOH . D 4 HOH A 92 692 92 HOH HOH . D 4 HOH A 93 693 93 HOH HOH . D 4 HOH A 94 694 94 HOH HOH . D 4 HOH A 95 695 95 HOH HOH . D 4 HOH A 96 696 96 HOH HOH . D 4 HOH A 97 697 97 HOH HOH . D 4 HOH A 98 698 98 HOH HOH . D 4 HOH A 99 699 99 HOH HOH . D 4 HOH A 100 700 100 HOH HOH . D 4 HOH A 101 701 101 HOH HOH . D 4 HOH A 102 702 102 HOH HOH . D 4 HOH A 103 703 103 HOH HOH . D 4 HOH A 104 704 104 HOH HOH . D 4 HOH A 105 705 105 HOH HOH . D 4 HOH A 106 706 106 HOH HOH . D 4 HOH A 107 707 107 HOH HOH . D 4 HOH A 108 708 108 HOH HOH . D 4 HOH A 109 709 109 HOH HOH . D 4 HOH A 110 710 110 HOH HOH . D 4 HOH A 111 711 111 HOH HOH . D 4 HOH A 112 712 112 HOH HOH . D 4 HOH A 113 713 113 HOH HOH . D 4 HOH A 114 714 114 HOH HOH . D 4 HOH A 115 715 115 HOH HOH . D 4 HOH A 116 716 116 HOH HOH . D 4 HOH A 117 717 117 HOH HOH . D 4 HOH A 118 718 118 HOH HOH . D 4 HOH A 119 719 119 HOH HOH . D 4 HOH A 120 720 120 HOH HOH . D 4 HOH A 121 721 121 HOH HOH . D 4 HOH A 122 722 122 HOH HOH . D 4 HOH A 123 723 123 HOH HOH . D 4 HOH A 124 724 124 HOH HOH . D 4 HOH A 125 725 125 HOH HOH . D 4 HOH A 126 726 126 HOH HOH . D 4 HOH A 127 727 127 HOH HOH . D 4 HOH A 128 728 128 HOH HOH . D 4 HOH A 129 729 129 HOH HOH . D 4 HOH A 130 730 130 HOH HOH . D 4 HOH A 131 731 131 HOH HOH . D 4 HOH A 132 732 132 HOH HOH . D 4 HOH A 133 733 133 HOH HOH . D 4 HOH A 134 734 134 HOH HOH . D 4 HOH A 135 735 135 HOH HOH . D 4 HOH A 136 736 136 HOH HOH . D 4 HOH A 137 737 137 HOH HOH . D 4 HOH A 138 738 138 HOH HOH . D 4 HOH A 139 739 139 HOH HOH . D 4 HOH A 140 740 140 HOH HOH . D 4 HOH A 141 741 141 HOH HOH . D 4 HOH A 142 742 142 HOH HOH . D 4 HOH A 143 743 143 HOH HOH . D 4 HOH A 144 744 144 HOH HOH . D 4 HOH A 145 745 145 HOH HOH . D 4 HOH A 146 746 146 HOH HOH . D 4 HOH A 147 747 147 HOH HOH . D 4 HOH A 148 748 148 HOH HOH . D 4 HOH A 149 749 149 HOH HOH . D 4 HOH A 150 750 150 HOH HOH . D 4 HOH A 151 751 151 HOH HOH . D 4 HOH A 152 752 152 HOH HOH . D 4 HOH A 153 753 153 HOH HOH . D 4 HOH A 154 754 154 HOH HOH . D 4 HOH A 155 755 155 HOH HOH . D 4 HOH A 156 756 156 HOH HOH . D 4 HOH A 157 757 157 HOH HOH . D 4 HOH A 158 758 158 HOH HOH . D 4 HOH A 159 759 159 HOH HOH . D 4 HOH A 160 760 160 HOH HOH . D 4 HOH A 161 761 161 HOH HOH . D 4 HOH A 162 762 162 HOH HOH . D 4 HOH A 163 763 163 HOH HOH . D 4 HOH A 164 764 164 HOH HOH . D 4 HOH A 165 765 165 HOH HOH . D 4 HOH A 166 766 166 HOH HOH . D 4 HOH A 167 767 167 HOH HOH . D 4 HOH A 168 768 168 HOH HOH . D 4 HOH A 169 769 169 HOH HOH . D 4 HOH A 170 770 170 HOH HOH . D 4 HOH A 171 771 171 HOH HOH . D 4 HOH A 172 772 172 HOH HOH . D 4 HOH A 173 773 173 HOH HOH . D 4 HOH A 174 774 174 HOH HOH . D 4 HOH A 175 775 175 HOH HOH . D 4 HOH A 176 776 176 HOH HOH . D 4 HOH A 177 777 177 HOH HOH . D 4 HOH A 178 778 178 HOH HOH . D 4 HOH A 179 779 179 HOH HOH . D 4 HOH A 180 780 180 HOH HOH . D 4 HOH A 181 781 181 HOH HOH . D 4 HOH A 182 782 182 HOH HOH . D 4 HOH A 183 783 183 HOH HOH . D 4 HOH A 184 784 184 HOH HOH . D 4 HOH A 185 785 185 HOH HOH . D 4 HOH A 186 786 186 HOH HOH . D 4 HOH A 187 787 187 HOH HOH . D 4 HOH A 188 788 188 HOH HOH . D 4 HOH A 189 789 189 HOH HOH . D 4 HOH A 190 790 190 HOH HOH . D 4 HOH A 191 791 191 HOH HOH . D 4 HOH A 192 792 192 HOH HOH . D 4 HOH A 193 793 193 HOH HOH . D 4 HOH A 194 794 194 HOH HOH . D 4 HOH A 195 795 195 HOH HOH . D 4 HOH A 196 796 196 HOH HOH . D 4 HOH A 197 797 197 HOH HOH . D 4 HOH A 198 798 198 HOH HOH . D 4 HOH A 199 799 199 HOH HOH . D 4 HOH A 200 800 200 HOH HOH . D 4 HOH A 201 801 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTE . . . B 2 18.405 -10.797 -9.974 1 24.58 ? N1 MTE 501 A 1 HETATM 2 C C2 MTE . . . B 2 19.065 -10.932 -8.794 1 25.2 ? C2 MTE 501 A 1 HETATM 3 N N2 MTE . . . B 2 19.253 -12.185 -8.302 1 24.93 ? N2 MTE 501 A 1 HETATM 4 N N3 MTE . . . B 2 19.508 -9.86 -8.093 1 24.72 ? N3 MTE 501 A 1 HETATM 5 C C4 MTE . . . B 2 19.337 -8.592 -8.522 1 25.56 ? C4 MTE 501 A 1 HETATM 6 O O4 MTE . . . B 2 19.778 -7.633 -7.843 1 27.77 ? O4 MTE 501 A 1 HETATM 7 N N5 MTE . . . B 2 18.368 -7.139 -10.373 1 24.84 ? N5 MTE 501 A 1 HETATM 8 C C6 MTE . . . B 2 17.156 -7.083 -11.204 1 24.57 ? C6 MTE 501 A 1 HETATM 9 C C7 MTE . . . B 2 17.226 -8.172 -12.282 1 24.04 ? C7 MTE 501 A 1 HETATM 10 N N8 MTE . . . B 2 17.518 -9.469 -11.705 1 24.65 ? N8 MTE 501 A 1 HETATM 11 C C9 MTE . . . B 2 18.628 -8.363 -9.813 1 24.62 ? C9 MTE 501 A 1 HETATM 12 C C10 MTE . . . B 2 18.176 -9.582 -10.526 1 24.97 ? C10 MTE 501 A 1 HETATM 13 C C1' MTE . . . B 2 16.866 -5.764 -11.886 1 25.19 ? C1' MTE 501 A 1 HETATM 14 S S1' MTE . . . B 2 16.052 -4.599 -10.941 1 26.12 ? S1' MTE 501 A 1 HETATM 15 C C2' MTE . . . B 2 17.188 -5.561 -13.182 1 25.11 ? C2' MTE 501 A 1 HETATM 16 S S2' MTE . . . B 2 16.799 -4.114 -14.001 1 25.33 ? S2' MTE 501 A 1 HETATM 17 C C3' MTE . . . B 2 17.873 -6.655 -13.996 1 24.81 ? C3' MTE 501 A 1 HETATM 18 O O3' MTE . . . B 2 18.245 -7.793 -13.205 1 23.85 ? O3' MTE 501 A 1 HETATM 19 C C4' MTE . . . B 2 19.12 -6.123 -14.688 1 24.62 ? C4' MTE 501 A 1 HETATM 20 O O4' MTE . . . B 2 19.801 -7.176 -15.398 1 24.73 ? O4' MTE 501 A 1 HETATM 21 P P MTE . . . B 2 21.293 -6.9 -15.924 1 25.2 ? P MTE 501 A 1 HETATM 22 O O1P MTE . . . B 2 21.117 -5.772 -16.922 1 25.6 ? O1P MTE 501 A 1 HETATM 23 O O2P MTE . . . B 2 21.714 -8.213 -16.538 1 26.45 ? O2P MTE 501 A 1 HETATM 24 O O3P MTE . . . B 2 22.094 -6.515 -14.711 1 25.68 ? O3P MTE 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #