data_3HBL # _model_server_result.job_id OhMcB6CMYsTlpI3eKEBd3g _model_server_result.datetime_utc '2025-02-25 04:47:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hbl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2100}' # _entry.id 3HBL # _exptl.entry_id 3HBL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.35 _cell.angle_gamma 90 _cell.entry_id 3HBL _cell.length_a 96.532 _cell.length_b 257.154 _cell.length_c 130.318 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HBL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 1112 A LYS 1144 1_555 E C11 BTI . A BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B NZ LYS 1112 B LYS 1144 1_555 G C11 BTI . B BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C NZ LYS 1112 C LYS 1144 1_555 I C11 BTI . C BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 D NZ LYS 1112 D LYS 1144 1_555 L C11 BTI . D BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OD1 ASP 542 A ASP 572 1_555 F MN MN . A MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc2 C OD1 ASP 542 C ASP 572 1_555 K MN MN . C MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc3 D OD1 ASP 542 D ASP 572 1_555 M MN MN . D MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HBL _atom_sites.fract_transf_matrix[1][1] 0.010359 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004688 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BTI A 1 2000 2000 BTI BTI . F 3 MN A 1 2002 2002 MN MN . G 2 BTI B 1 2000 2000 BTI BTI . H 3 MN B 1 2002 2002 MN MN . I 2 BTI C 1 2000 2000 BTI BTI . J 4 ADP C 1 2100 2100 ADP ADP . K 3 MN C 1 2002 2002 MN MN . L 2 BTI D 1 2000 2000 BTI BTI . M 3 MN D 1 2002 2002 MN MN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . J 4 60.294 41.829 -19.693 1 93.78 ? PB ADP 2100 C 1 HETATM 2 O O1B ADP . . . J 4 59.731 40.954 -20.789 1 93.61 ? O1B ADP 2100 C 1 HETATM 3 O O2B ADP . . . J 4 61.297 41.133 -18.806 1 93.36 ? O2B ADP 2100 C 1 HETATM 4 O O3B ADP . . . J 4 59.253 42.647 -18.957 1 93.66 ? O3B ADP 2100 C 1 HETATM 5 P PA ADP . . . J 4 61.562 44.35 -19.919 1 94.49 ? PA ADP 2100 C 1 HETATM 6 O O1A ADP . . . J 4 60.279 45.154 -19.85 1 94.46 ? O1A ADP 2100 C 1 HETATM 7 O O2A ADP . . . J 4 62.74 44.872 -20.708 1 94.43 ? O2A ADP 2100 C 1 HETATM 8 O O3A ADP . . . J 4 61.187 42.896 -20.504 1 93.97 ? O3A ADP 2100 C 1 HETATM 9 O O5' ADP . . . J 4 62.112 44.045 -18.432 1 93.96 ? O5' ADP 2100 C 1 HETATM 10 C C5' ADP . . . J 4 61.412 44.491 -17.271 1 93.5 ? C5' ADP 2100 C 1 HETATM 11 C C4' ADP . . . J 4 62.193 45.547 -16.492 1 92.88 ? C4' ADP 2100 C 1 HETATM 12 O O4' ADP . . . J 4 63.611 45.453 -16.66 1 92.82 ? O4' ADP 2100 C 1 HETATM 13 C C3' ADP . . . J 4 61.845 46.958 -16.918 1 92.64 ? C3' ADP 2100 C 1 HETATM 14 O O3' ADP . . . J 4 60.66 47.404 -16.262 1 92.82 ? O3' ADP 2100 C 1 HETATM 15 C C2' ADP . . . J 4 63.067 47.754 -16.505 1 92.46 ? C2' ADP 2100 C 1 HETATM 16 O O2' ADP . . . J 4 62.948 48.233 -15.162 1 92.14 ? O2' ADP 2100 C 1 HETATM 17 C C1' ADP . . . J 4 64.211 46.755 -16.579 1 92.53 ? C1' ADP 2100 C 1 HETATM 18 N N9 ADP . . . J 4 65.033 47.058 -17.786 1 92.51 ? N9 ADP 2100 C 1 HETATM 19 C C8 ADP . . . J 4 64.944 46.432 -18.976 1 92.44 ? C8 ADP 2100 C 1 HETATM 20 N N7 ADP . . . J 4 65.824 46.943 -19.872 1 92.37 ? N7 ADP 2100 C 1 HETATM 21 C C5 ADP . . . J 4 66.501 47.928 -19.256 1 92.44 ? C5 ADP 2100 C 1 HETATM 22 C C6 ADP . . . J 4 67.577 48.884 -19.629 1 92.53 ? C6 ADP 2100 C 1 HETATM 23 N N6 ADP . . . J 4 68.107 48.876 -20.876 1 92.52 ? N6 ADP 2100 C 1 HETATM 24 N N1 ADP . . . J 4 68.01 49.76 -18.687 1 92.48 ? N1 ADP 2100 C 1 HETATM 25 C C2 ADP . . . J 4 67.484 49.776 -17.446 1 92.42 ? C2 ADP 2100 C 1 HETATM 26 N N3 ADP . . . J 4 66.507 48.936 -17.043 1 92.53 ? N3 ADP 2100 C 1 HETATM 27 C C4 ADP . . . J 4 65.979 48.004 -17.882 1 92.38 ? C4 ADP 2100 C 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 27 #