data_3HBO # _model_server_result.job_id hk_EJE7t_EElTsNn1A6UDQ _model_server_result.datetime_utc '2024-11-22 00:23:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":0}' # _entry.id 3HBO # _exptl.entry_id 3HBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 770.983 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HBO _cell.length_a 51.258 _cell.length_b 58.626 _cell.length_c 61.472 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 A,B,C,D,E 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 35 A GLU 35 1_555 A N NLE 36 A NLE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C NLE 36 A NLE 36 1_555 A N ASN 37 A ASN 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C GLY 40 A GLY 40 1_555 A N SMC 41 A SMC 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale4 A C SMC 41 A SMC 41 1_555 A N TRP 42 A TRP 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale5 A C LYS 45 A LYS 45 1_555 A N NLE 46 A NLE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 A C NLE 46 A NLE 46 1_555 A N ILE 47 A ILE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale7 A C ILE 50 A ILE 50 1_555 A N DAL 51 A DAL 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C DAL 51 A DAL 51 1_555 A N GLY 52 A GLY 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 A C ILE 66 A ILE 66 1_555 A N ABA 67 A ABA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 A C ABA 67 A ABA 67 1_555 A N GLY 68 A GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C GLY 94 A GLY 94 1_555 A N ABA 95 A ABA 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale12 A C ABA 95 A ABA 95 1_555 A N THR 96 A THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale13 B C GLU 35 B GLU 35 1_555 B N NLE 36 B NLE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 B C NLE 36 B NLE 36 1_555 B N ASN 37 B ASN 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 B C GLY 40 B GLY 40 1_555 B N SMC 41 B SMC 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 B C SMC 41 B SMC 41 1_555 B N TRP 42 B TRP 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale17 B C LYS 45 B LYS 45 1_555 B N NLE 46 B NLE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale18 B C NLE 46 B NLE 46 1_555 B N ILE 47 B ILE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale19 B C ILE 50 B ILE 50 1_555 B N DAL 51 B DAL 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale20 B C DAL 51 B DAL 51 1_555 B N GLY 52 B GLY 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale21 B C ILE 66 B ILE 66 1_555 B N ABA 67 B ABA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale22 B C ABA 67 B ABA 67 1_555 B N GLY 68 B GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale23 B C GLY 94 B GLY 94 1_555 B N ABA 95 B ABA 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale24 B C ABA 95 B ABA 95 1_555 B N THR 96 B THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C35 H68 N11 O8 1' _chem_comp.formula_weight 770.983 _chem_comp.id 2NC _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms p2/NC # _atom_sites.entry_id 3HBO _atom_sites.fract_transf_matrix[1][1] 0.019509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2NC A 1 0 0 2NC 2NC . D 3 HOH A 1 100 1 HOH HOH . D 3 HOH A 2 101 2 HOH HOH . D 3 HOH A 3 102 3 HOH HOH . D 3 HOH A 4 103 5 HOH HOH . D 3 HOH A 5 104 6 HOH HOH . D 3 HOH A 6 105 10 HOH HOH . D 3 HOH A 7 106 15 HOH HOH . D 3 HOH A 8 107 17 HOH HOH . D 3 HOH A 9 108 18 HOH HOH . D 3 HOH A 10 109 24 HOH HOH . D 3 HOH A 11 110 25 HOH HOH . D 3 HOH A 12 111 26 HOH HOH . D 3 HOH A 13 112 27 HOH HOH . D 3 HOH A 14 113 28 HOH HOH . D 3 HOH A 15 114 29 HOH HOH . D 3 HOH A 16 115 30 HOH HOH . D 3 HOH A 17 116 34 HOH HOH . D 3 HOH A 18 117 36 HOH HOH . D 3 HOH A 19 118 39 HOH HOH . D 3 HOH A 20 119 40 HOH HOH . D 3 HOH A 21 120 41 HOH HOH . D 3 HOH A 22 121 42 HOH HOH . D 3 HOH A 23 122 45 HOH HOH . D 3 HOH A 24 123 46 HOH HOH . D 3 HOH A 25 124 48 HOH HOH . D 3 HOH A 26 125 50 HOH HOH . D 3 HOH A 27 126 55 HOH HOH . D 3 HOH A 28 127 56 HOH HOH . D 3 HOH A 29 128 57 HOH HOH . D 3 HOH A 30 129 60 HOH HOH . D 3 HOH A 31 130 61 HOH HOH . D 3 HOH A 32 131 63 HOH HOH . D 3 HOH A 33 132 65 HOH HOH . D 3 HOH A 34 133 66 HOH HOH . D 3 HOH A 35 134 67 HOH HOH . D 3 HOH A 36 135 73 HOH HOH . D 3 HOH A 37 136 74 HOH HOH . D 3 HOH A 38 137 77 HOH HOH . D 3 HOH A 39 138 79 HOH HOH . D 3 HOH A 40 139 83 HOH HOH . D 3 HOH A 41 140 84 HOH HOH . D 3 HOH A 42 141 85 HOH HOH . D 3 HOH A 43 142 86 HOH HOH . D 3 HOH A 44 143 87 HOH HOH . E 3 HOH B 1 100 4 HOH HOH . E 3 HOH B 2 101 7 HOH HOH . E 3 HOH B 3 102 8 HOH HOH . E 3 HOH B 4 103 9 HOH HOH . E 3 HOH B 5 104 11 HOH HOH . E 3 HOH B 6 105 12 HOH HOH . E 3 HOH B 7 106 13 HOH HOH . E 3 HOH B 8 107 14 HOH HOH . E 3 HOH B 9 108 16 HOH HOH . E 3 HOH B 10 109 19 HOH HOH . E 3 HOH B 11 110 20 HOH HOH . E 3 HOH B 12 111 21 HOH HOH . E 3 HOH B 13 112 22 HOH HOH . E 3 HOH B 14 113 23 HOH HOH . E 3 HOH B 15 114 31 HOH HOH . E 3 HOH B 16 115 32 HOH HOH . E 3 HOH B 17 116 33 HOH HOH . E 3 HOH B 18 117 35 HOH HOH . E 3 HOH B 19 118 37 HOH HOH . E 3 HOH B 20 119 38 HOH HOH . E 3 HOH B 21 120 43 HOH HOH . E 3 HOH B 22 121 44 HOH HOH . E 3 HOH B 23 122 47 HOH HOH . E 3 HOH B 24 123 49 HOH HOH . E 3 HOH B 25 124 51 HOH HOH . E 3 HOH B 26 125 52 HOH HOH . E 3 HOH B 27 126 53 HOH HOH . E 3 HOH B 28 127 54 HOH HOH . E 3 HOH B 29 128 58 HOH HOH . E 3 HOH B 30 129 59 HOH HOH . E 3 HOH B 31 130 62 HOH HOH . E 3 HOH B 32 131 64 HOH HOH . E 3 HOH B 33 132 68 HOH HOH . E 3 HOH B 34 133 69 HOH HOH . E 3 HOH B 35 134 70 HOH HOH . E 3 HOH B 36 135 71 HOH HOH . E 3 HOH B 37 136 72 HOH HOH . E 3 HOH B 38 137 75 HOH HOH . E 3 HOH B 39 138 76 HOH HOH . E 3 HOH B 40 139 78 HOH HOH . E 3 HOH B 41 140 80 HOH HOH . E 3 HOH B 42 141 81 HOH HOH . E 3 HOH B 43 142 82 HOH HOH . E 3 HOH B 44 143 88 HOH HOH . E 3 HOH B 45 144 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 2NC . . . C 2 4.419 -8.914 16.331 1 27.33 ? C 2NC 0 A 1 HETATM 2 O O 2NC . . . C 2 3.477 -8.45 16.97 1 28.97 ? O 2NC 0 A 1 HETATM 3 C CH3 2NC . . . C 2 4.219 -9.747 15.086 1 27.01 ? CH3 2NC 0 A 1 HETATM 4 N N 2NC . . . C 2 5.681 -8.604 16.604 1 25.05 ? N 2NC 0 A 1 HETATM 5 C CA 2NC . . . C 2 6.119 -7.95 17.829 1 24.28 ? CA 2NC 0 A 1 HETATM 6 C C1 2NC . . . C 2 6.692 -6.549 17.627 1 23.84 ? C1 2NC 0 A 1 HETATM 7 O O1 2NC . . . C 2 6.989 -5.86 18.599 1 22.89 ? O1 2NC 0 A 1 HETATM 8 C CB 2NC . . . C 2 7.147 -8.801 18.583 1 25.83 ? CB 2NC 0 A 1 HETATM 9 O OG1 2NC . . . C 2 8.329 -8.957 17.794 1 25.15 ? OG1 2NC 0 A 1 HETATM 10 C CG2 2NC . . . C 2 6.547 -10.219 18.905 1 25.01 ? CG2 2NC 0 A 1 HETATM 11 N N1 2NC . . . C 2 6.827 -6.105 16.387 1 22.17 ? N1 2NC 0 A 1 HETATM 12 C CA1 2NC . . . C 2 7.388 -4.781 16.182 1 21.35 ? CA1 2NC 0 A 1 HETATM 13 C C2 2NC . . . C 2 6.343 -3.906 15.501 1 23.29 ? C2 2NC 0 A 1 HETATM 14 O O2 2NC . . . C 2 6.267 -3.889 14.282 1 24.13 ? O2 2NC 0 A 1 HETATM 15 C CB1 2NC . . . C 2 8.692 -4.821 15.383 1 22.11 ? CB1 2NC 0 A 1 HETATM 16 C CG1 2NC . . . C 2 9.668 -5.89 15.905 1 20.93 ? CG1 2NC 0 A 1 HETATM 17 C CG21 2NC . . . C 2 9.353 -3.436 15.303 1 21.57 ? CG21 2NC 0 A 1 HETATM 18 C CD1 2NC . . . C 2 10.202 -5.691 17.342 1 22.28 ? CD1 2NC 0 A 1 HETATM 19 N N2 2NC . . . C 2 5.471 -3.267 16.27 1 22.81 ? N2 2NC 0 A 1 HETATM 20 C CA2 2NC . . . C 2 4.344 -2.557 15.632 1 21.86 ? CA2 2NC 0 A 1 HETATM 21 C C3 2NC . . . C 2 4.615 -1.069 15.566 1 22.47 ? C3 2NC 0 A 1 HETATM 22 C CB2 2NC . . . C 2 3.073 -2.895 16.411 1 20.55 ? CB2 2NC 0 A 1 HETATM 23 C CG 2NC . . . C 2 2.867 -4.391 16.675 1 22.64 ? CG 2NC 0 A 1 HETATM 24 C CD 2NC . . . C 2 2.769 -5.207 15.386 1 24.71 ? CD 2NC 0 A 1 HETATM 25 C CE 2NC . . . C 2 1.686 -4.663 14.464 1 29.54 ? CE 2NC 0 A 1 HETATM 26 N N3 2NC . . . C 2 5.842 -0.726 14.855 1 22.87 ? N3 2NC 0 A 1 HETATM 27 C CA3 2NC . . . C 2 5.82 0.452 13.954 1 23.81 ? CA3 2NC 0 A 1 HETATM 28 C C4 2NC . . . C 2 4.707 0.376 12.899 1 24.27 ? C4 2NC 0 A 1 HETATM 29 O O3 2NC . . . C 2 4.436 -0.661 12.315 1 26.32 ? O3 2NC 0 A 1 HETATM 30 C CB3 2NC . . . C 2 7.219 0.615 13.336 1 25.1 ? CB3 2NC 0 A 1 HETATM 31 C CG3 2NC . . . C 2 7.41 1.838 12.45 1 27.87 ? CG3 2NC 0 A 1 HETATM 32 C CD2 2NC . . . C 2 7.399 1.42 10.971 1 30.1 ? CD2 2NC 0 A 1 HETATM 33 C CE1 2NC . . . C 2 8.649 0.649 10.565 1 27.17 ? CE1 2NC 0 A 1 HETATM 34 N N4 2NC . . . C 2 4.094 1.516 12.594 1 22.55 ? N4 2NC 0 A 1 HETATM 35 C CA4 2NC . . . C 2 3.096 1.584 11.519 1 21.33 ? CA4 2NC 0 A 1 HETATM 36 C C5 2NC . . . C 2 3.121 2.972 10.897 1 23.43 ? C5 2NC 0 A 1 HETATM 37 O O4 2NC . . . C 2 3.278 3.978 11.583 1 21.71 ? O4 2NC 0 A 1 HETATM 38 C CB4 2NC . . . C 2 1.686 1.239 12.04 1 22.08 ? CB4 2NC 0 A 1 HETATM 39 C CG4 2NC . . . C 2 0.585 1.34 10.975 1 21.09 ? CG4 2NC 0 A 1 HETATM 40 C CD3 2NC . . . C 2 0.021 2.735 10.86 1 23.46 ? CD3 2NC 0 A 1 HETATM 41 O OE1 2NC . . . C 2 0.102 3.505 11.795 1 23.98 ? OE1 2NC 0 A 1 HETATM 42 N NE2 2NC . . . C 2 -0.624 3.043 9.735 1 21.61 ? NE2 2NC 0 A 1 HETATM 43 N N5 2NC . . . C 2 3.037 3.008 9.579 1 24.71 ? N5 2NC 0 A 1 HETATM 44 C CA5 2NC . . . C 2 3.097 4.267 8.837 1 27.77 ? CA5 2NC 0 A 1 HETATM 45 C C6 2NC . . . C 2 1.882 4.311 7.946 1 30.76 ? C6 2NC 0 A 1 HETATM 46 O O5 2NC . . . C 2 1.674 3.387 7.156 1 27.45 ? O5 2NC 0 A 1 HETATM 47 C CB5 2NC . . . C 2 4.36 4.285 7.97 1 28.44 ? CB5 2NC 0 A 1 HETATM 48 C CG5 2NC . . . C 2 5.641 4.19 8.736 1 33.22 ? CG5 2NC 0 A 1 HETATM 49 C CD4 2NC . . . C 2 5.545 5.223 9.816 1 33.16 ? CD4 2NC 0 A 1 HETATM 50 N NE 2NC . . . C 2 6.6 5.221 10.827 1 34.24 ? NE 2NC 0 A 1 HETATM 51 C CZ 2NC . . . C 2 7.754 5.838 10.677 1 29.72 ? CZ 2NC 0 A 1 HETATM 52 N NH1 2NC . . . C 2 8.063 6.434 9.514 1 33.16 ? NH1 2NC 0 A 1 HETATM 53 N NH2 2NC . . . C 2 8.624 5.824 11.658 1 34.04 ? NH2 2NC 0 A 1 HETATM 54 N N6 2NC . . . C 2 1.258 5.466 7.705 1 30.16 ? N6 2NC 0 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 54 #