data_3HBP
#
_model_server_result.job_id            O9lwSQ4zv83-q72Z1rJg9w 
_model_server_result.datetime_utc      '2024-10-19 13:19:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hbp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    3HBP 
#
_exptl.entry_id    3HBP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              395.352 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HBP 
_cell.length_a            86.284 
_cell.length_b            86.284 
_cell.length_c            152.339 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HBP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B S1' MTE . A MTE 501 1_555 C MO1 MOM . A MOM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc2 B S2' MTE . A MTE 501 1_555 C MO1 MOM . A MOM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
#
_chem_comp.formula           'C10 H14 N5 O6 P S2' 
_chem_comp.formula_weight    395.352 
_chem_comp.id                MTE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 MTE doub 241 n y 
N1 C10 MTE sing 242 n y 
C2 N2 MTE sing 243 n n 
C2 N3 MTE sing 244 n y 
N2 HN21 MTE sing 245 n n 
N2 HN22 MTE sing 246 n n 
N3 C4 MTE sing 247 n y 
N3 HN3 MTE sing 248 n n 
C4 O4 MTE doub 249 n n 
C4 C9 MTE sing 250 n y 
N5 C6 MTE sing 251 n n 
N5 C9 MTE sing 252 n n 
N5 HN5 MTE sing 253 n n 
C6 C7 MTE sing 254 n n 
C6 C1' MTE sing 255 n n 
C6 H6 MTE sing 256 n n 
C7 N8 MTE sing 257 n n 
C7 O3' MTE sing 258 n n 
C7 H7 MTE sing 259 n n 
N8 C10 MTE sing 260 n n 
N8 HN8 MTE sing 261 n n 
C9 C10 MTE doub 262 n y 
C1' S1' MTE sing 263 n n 
C1' C2' MTE doub 264 n n 
S1' H1S MTE sing 265 n n 
C2' S2' MTE sing 266 n n 
C2' C3' MTE sing 267 n n 
S2' H2S MTE sing 268 n n 
C3' O3' MTE sing 269 n n 
C3' C4' MTE sing 270 n n 
C3' H3' MTE sing 271 n n 
C4' O4' MTE sing 272 n n 
C4' "H4'1" MTE sing 273 n n 
C4' "H4'2" MTE sing 274 n n 
O4' P MTE sing 275 n n 
P O1P MTE doub 276 n n 
P O2P MTE sing 277 n n 
P O3P MTE sing 278 n n 
O2P HOP2 MTE sing 279 n n 
O3P HOP3 MTE sing 280 n n 
#
_atom_sites.entry_id                     3HBP 
_atom_sites.fract_transf_matrix[1][1]    0.01159 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01159 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006564 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MTE A 1 501 501 MTE MTE . 
C 3 MOM A 1 502 502 MOM MOM . 
D 4 SO3 A 1 1257 1257 SO3 SO3 . 
E 5 HOH A 1 467 1 HOH HOH . 
E 5 HOH A 2 468 2 HOH HOH . 
E 5 HOH A 3 469 3 HOH HOH . 
E 5 HOH A 4 470 1 HOH HOH . 
E 5 HOH A 5 471 2 HOH HOH . 
E 5 HOH A 6 472 4 HOH HOH . 
E 5 HOH A 7 473 5 HOH HOH . 
E 5 HOH A 8 474 6 HOH HOH . 
E 5 HOH A 9 475 7 HOH HOH . 
E 5 HOH A 10 476 8 HOH HOH . 
E 5 HOH A 11 477 9 HOH HOH . 
E 5 HOH A 12 478 10 HOH HOH . 
E 5 HOH A 13 479 11 HOH HOH . 
E 5 HOH A 14 480 12 HOH HOH . 
E 5 HOH A 15 481 13 HOH HOH . 
E 5 HOH A 16 482 14 HOH HOH . 
E 5 HOH A 17 483 15 HOH HOH . 
E 5 HOH A 18 484 16 HOH HOH . 
E 5 HOH A 19 485 17 HOH HOH . 
E 5 HOH A 20 486 18 HOH HOH . 
E 5 HOH A 21 487 19 HOH HOH . 
E 5 HOH A 22 488 20 HOH HOH . 
E 5 HOH A 23 489 21 HOH HOH . 
E 5 HOH A 24 490 22 HOH HOH . 
E 5 HOH A 25 491 23 HOH HOH . 
E 5 HOH A 26 492 24 HOH HOH . 
E 5 HOH A 27 493 25 HOH HOH . 
E 5 HOH A 28 494 26 HOH HOH . 
E 5 HOH A 29 495 27 HOH HOH . 
E 5 HOH A 30 496 28 HOH HOH . 
E 5 HOH A 31 497 29 HOH HOH . 
E 5 HOH A 32 498 30 HOH HOH . 
E 5 HOH A 33 499 31 HOH HOH . 
E 5 HOH A 34 500 32 HOH HOH . 
E 5 HOH A 35 503 33 HOH HOH . 
E 5 HOH A 36 504 34 HOH HOH . 
E 5 HOH A 37 505 35 HOH HOH . 
E 5 HOH A 38 506 36 HOH HOH . 
E 5 HOH A 39 507 37 HOH HOH . 
E 5 HOH A 40 508 38 HOH HOH . 
E 5 HOH A 41 509 39 HOH HOH . 
E 5 HOH A 42 510 40 HOH HOH . 
E 5 HOH A 43 511 41 HOH HOH . 
E 5 HOH A 44 512 42 HOH HOH . 
E 5 HOH A 45 513 43 HOH HOH . 
E 5 HOH A 46 514 44 HOH HOH . 
E 5 HOH A 47 515 45 HOH HOH . 
E 5 HOH A 48 516 46 HOH HOH . 
E 5 HOH A 49 517 47 HOH HOH . 
E 5 HOH A 50 518 48 HOH HOH . 
E 5 HOH A 51 519 49 HOH HOH . 
E 5 HOH A 52 520 50 HOH HOH . 
E 5 HOH A 53 521 51 HOH HOH . 
E 5 HOH A 54 522 52 HOH HOH . 
E 5 HOH A 55 523 53 HOH HOH . 
E 5 HOH A 56 524 54 HOH HOH . 
E 5 HOH A 57 525 55 HOH HOH . 
E 5 HOH A 58 526 56 HOH HOH . 
E 5 HOH A 59 527 57 HOH HOH . 
E 5 HOH A 60 528 58 HOH HOH . 
E 5 HOH A 61 529 59 HOH HOH . 
E 5 HOH A 62 530 60 HOH HOH . 
E 5 HOH A 63 531 61 HOH HOH . 
E 5 HOH A 64 532 62 HOH HOH . 
E 5 HOH A 65 533 63 HOH HOH . 
E 5 HOH A 66 534 64 HOH HOH . 
E 5 HOH A 67 535 65 HOH HOH . 
E 5 HOH A 68 536 66 HOH HOH . 
E 5 HOH A 69 537 67 HOH HOH . 
E 5 HOH A 70 538 68 HOH HOH . 
E 5 HOH A 71 539 69 HOH HOH . 
E 5 HOH A 72 540 70 HOH HOH . 
E 5 HOH A 73 541 71 HOH HOH . 
E 5 HOH A 74 542 72 HOH HOH . 
E 5 HOH A 75 543 73 HOH HOH . 
E 5 HOH A 76 544 74 HOH HOH . 
E 5 HOH A 77 545 75 HOH HOH . 
E 5 HOH A 78 546 76 HOH HOH . 
E 5 HOH A 79 547 77 HOH HOH . 
E 5 HOH A 80 548 78 HOH HOH . 
E 5 HOH A 81 549 79 HOH HOH . 
E 5 HOH A 82 550 80 HOH HOH . 
E 5 HOH A 83 551 81 HOH HOH . 
E 5 HOH A 84 552 82 HOH HOH . 
E 5 HOH A 85 553 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MTE . . . B 2 -23.114 -8.224 44.693 1 29.15 ? N1 MTE 501 A 1 
HETATM 2 C C2 MTE . . . B 2 -24.087 -9.149 44.66 1 28.56 ? C2 MTE 501 A 1 
HETATM 3 N N2 MTE . . . B 2 -24.586 -9.522 45.848 1 27.86 ? N2 MTE 501 A 1 
HETATM 4 N N3 MTE . . . B 2 -24.552 -9.684 43.514 1 29.45 ? N3 MTE 501 A 1 
HETATM 5 C C4 MTE . . . B 2 -24.064 -9.299 42.325 1 29.79 ? C4 MTE 501 A 1 
HETATM 6 O O4 MTE . . . B 2 -24.51 -9.794 41.28 1 32.93 ? O4 MTE 501 A 1 
HETATM 7 N N5 MTE . . . B 2 -22.379 -7.83 41.142 1 29.27 ? N5 MTE 501 A 1 
HETATM 8 C C6 MTE . . . B 2 -20.992 -7.423 41.349 1 28.08 ? C6 MTE 501 A 1 
HETATM 9 C C7 MTE . . . B 2 -20.879 -6.392 42.472 1 26.68 ? C7 MTE 501 A 1 
HETATM 10 N N8 MTE . . . B 2 -21.545 -6.849 43.666 1 27.24 ? N8 MTE 501 A 1 
HETATM 11 C C9 MTE . . . B 2 -22.985 -8.286 42.274 1 30.63 ? C9 MTE 501 A 1 
HETATM 12 C C10 MTE . . . B 2 -22.531 -7.764 43.582 1 27.9 ? C10 MTE 501 A 1 
HETATM 13 C C1' MTE . . . B 2 -20.386 -6.812 40.119 1 27.6 ? C1' MTE 501 A 1 
HETATM 14 S S1' MTE . . . B 2 -19.836 -7.87 38.941 1 26.48 ? S1' MTE 501 A 1 
HETATM 15 C C2' MTE . . . B 2 -20.273 -5.488 39.977 1 28.8 ? C2' MTE 501 A 1 
HETATM 16 S S2' MTE . . . B 2 -19.485 -4.839 38.628 1 27.39 ? S2' MTE 501 A 1 
HETATM 17 C C3' MTE . . . B 2 -20.83 -4.523 41.021 1 27.47 ? C3' MTE 501 A 1 
HETATM 18 O O3' MTE . . . B 2 -21.531 -5.209 42.044 1 25.58 ? O3' MTE 501 A 1 
HETATM 19 C C4' MTE . . . B 2 -21.808 -3.559 40.363 1 26.7 ? C4' MTE 501 A 1 
HETATM 20 O O4' MTE . . . B 2 -22.385 -2.732 41.344 1 28.29 ? O4' MTE 501 A 1 
HETATM 21 P P MTE . . . B 2 -23.532 -1.671 40.981 1 28.46 ? P MTE 501 A 1 
HETATM 22 O O1P MTE . . . B 2 -22.848 -0.838 39.948 1 30.31 ? O1P MTE 501 A 1 
HETATM 23 O O2P MTE . . . B 2 -23.779 -0.875 42.225 1 29.62 ? O2P MTE 501 A 1 
HETATM 24 O O3P MTE . . . B 2 -24.696 -2.564 40.593 1 29.47 ? O3P MTE 501 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           24 
#