data_3HBQ # _model_server_result.job_id 7Od5kYcUrT6F9ga4RTjNbA _model_server_result.datetime_utc '2025-03-06 03:57:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hbq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 3HBQ # _exptl.entry_id 3HBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HBQ _cell.length_a 86.284 _cell.length_b 86.284 _cell.length_c 152.991 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -86.284 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B S1' MTE . A MTE 501 1_555 C MO1 MOM . A MOM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 B S2' MTE . A MTE 501 1_555 C MO1 MOM . A MOM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3HBQ _atom_sites.fract_transf_matrix[1][1] 0.01159 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTE A 1 501 501 MTE MTE . C 3 MOM A 1 502 502 MOM MOM . D 4 GOL A 1 1001 1001 GOL GOL . E 5 HOH A 1 467 1 HOH HOH . E 5 HOH A 2 468 2 HOH HOH . E 5 HOH A 3 469 3 HOH HOH . E 5 HOH A 4 470 4 HOH HOH . E 5 HOH A 5 471 6 HOH HOH . E 5 HOH A 6 472 7 HOH HOH . E 5 HOH A 7 473 8 HOH HOH . E 5 HOH A 8 474 9 HOH HOH . E 5 HOH A 9 475 10 HOH HOH . E 5 HOH A 10 476 11 HOH HOH . E 5 HOH A 11 477 12 HOH HOH . E 5 HOH A 12 478 13 HOH HOH . E 5 HOH A 13 479 14 HOH HOH . E 5 HOH A 14 480 15 HOH HOH . E 5 HOH A 15 481 16 HOH HOH . E 5 HOH A 16 482 17 HOH HOH . E 5 HOH A 17 483 18 HOH HOH . E 5 HOH A 18 484 19 HOH HOH . E 5 HOH A 19 485 20 HOH HOH . E 5 HOH A 20 486 21 HOH HOH . E 5 HOH A 21 487 23 HOH HOH . E 5 HOH A 22 488 24 HOH HOH . E 5 HOH A 23 489 25 HOH HOH . E 5 HOH A 24 490 26 HOH HOH . E 5 HOH A 25 491 27 HOH HOH . E 5 HOH A 26 492 28 HOH HOH . E 5 HOH A 27 493 29 HOH HOH . E 5 HOH A 28 494 30 HOH HOH . E 5 HOH A 29 495 31 HOH HOH . E 5 HOH A 30 496 32 HOH HOH . E 5 HOH A 31 497 33 HOH HOH . E 5 HOH A 32 498 34 HOH HOH . E 5 HOH A 33 499 35 HOH HOH . E 5 HOH A 34 500 36 HOH HOH . E 5 HOH A 35 503 37 HOH HOH . E 5 HOH A 36 504 38 HOH HOH . E 5 HOH A 37 505 39 HOH HOH . E 5 HOH A 38 506 40 HOH HOH . E 5 HOH A 39 507 41 HOH HOH . E 5 HOH A 40 508 42 HOH HOH . E 5 HOH A 41 509 43 HOH HOH . E 5 HOH A 42 510 44 HOH HOH . E 5 HOH A 43 511 45 HOH HOH . E 5 HOH A 44 512 46 HOH HOH . E 5 HOH A 45 513 1 HOH HOH . E 5 HOH A 46 514 2 HOH HOH . E 5 HOH A 47 515 3 HOH HOH . E 5 HOH A 48 516 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -8.909 -25.431 -43.103 1 57.3 ? C1 GOL 1001 A 1 HETATM 2 O O1 GOL . . . D 4 -7.566 -25.35 -42.64 1 57.01 ? O1 GOL 1001 A 1 HETATM 3 C C2 GOL . . . D 4 -9.209 -24.01 -43.502 1 57.14 ? C2 GOL 1001 A 1 HETATM 4 O O2 GOL . . . D 4 -8.689 -23.341 -42.401 1 57.71 ? O2 GOL 1001 A 1 HETATM 5 C C3 GOL . . . D 4 -10.714 -23.73 -43.646 1 59.36 ? C3 GOL 1001 A 1 HETATM 6 O O3 GOL . . . D 4 -10.917 -22.563 -44.451 1 55.42 ? O3 GOL 1001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #