data_3HBQ # _model_server_result.job_id h-dDVl6xecU3aF1991kiMA _model_server_result.datetime_utc '2025-03-06 03:35:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hbq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3HBQ # _exptl.entry_id 3HBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 395.352 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HBQ _cell.length_a 86.284 _cell.length_b 86.284 _cell.length_c 152.991 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -86.284 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B S1' MTE . A MTE 501 1_555 C MO1 MOM . A MOM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 B S2' MTE . A MTE 501 1_555 C MO1 MOM . A MOM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? # _chem_comp.formula 'C10 H14 N5 O6 P S2' _chem_comp.formula_weight 395.352 _chem_comp.id MTE _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTE doub 254 n y N1 C10 MTE sing 255 n y C2 N2 MTE sing 256 n n C2 N3 MTE sing 257 n y N2 HN21 MTE sing 258 n n N2 HN22 MTE sing 259 n n N3 C4 MTE sing 260 n y N3 HN3 MTE sing 261 n n C4 O4 MTE doub 262 n n C4 C9 MTE sing 263 n y N5 C6 MTE sing 264 n n N5 C9 MTE sing 265 n n N5 HN5 MTE sing 266 n n C6 C7 MTE sing 267 n n C6 C1' MTE sing 268 n n C6 H6 MTE sing 269 n n C7 N8 MTE sing 270 n n C7 O3' MTE sing 271 n n C7 H7 MTE sing 272 n n N8 C10 MTE sing 273 n n N8 HN8 MTE sing 274 n n C9 C10 MTE doub 275 n y C1' S1' MTE sing 276 n n C1' C2' MTE doub 277 n n S1' H1S MTE sing 278 n n C2' S2' MTE sing 279 n n C2' C3' MTE sing 280 n n S2' H2S MTE sing 281 n n C3' O3' MTE sing 282 n n C3' C4' MTE sing 283 n n C3' H3' MTE sing 284 n n C4' O4' MTE sing 285 n n C4' "H4'1" MTE sing 286 n n C4' "H4'2" MTE sing 287 n n O4' P MTE sing 288 n n P O1P MTE doub 289 n n P O2P MTE sing 290 n n P O3P MTE sing 291 n n O2P HOP2 MTE sing 292 n n O3P HOP3 MTE sing 293 n n # _atom_sites.entry_id 3HBQ _atom_sites.fract_transf_matrix[1][1] 0.01159 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTE A 1 501 501 MTE MTE . C 3 MOM A 1 502 502 MOM MOM . D 4 GOL A 1 1001 1001 GOL GOL . E 5 HOH A 1 467 1 HOH HOH . E 5 HOH A 2 468 2 HOH HOH . E 5 HOH A 3 469 3 HOH HOH . E 5 HOH A 4 470 4 HOH HOH . E 5 HOH A 5 471 6 HOH HOH . E 5 HOH A 6 472 7 HOH HOH . E 5 HOH A 7 473 8 HOH HOH . E 5 HOH A 8 474 9 HOH HOH . E 5 HOH A 9 475 10 HOH HOH . E 5 HOH A 10 476 11 HOH HOH . E 5 HOH A 11 477 12 HOH HOH . E 5 HOH A 12 478 13 HOH HOH . E 5 HOH A 13 479 14 HOH HOH . E 5 HOH A 14 480 15 HOH HOH . E 5 HOH A 15 481 16 HOH HOH . E 5 HOH A 16 482 17 HOH HOH . E 5 HOH A 17 483 18 HOH HOH . E 5 HOH A 18 484 19 HOH HOH . E 5 HOH A 19 485 20 HOH HOH . E 5 HOH A 20 486 21 HOH HOH . E 5 HOH A 21 487 23 HOH HOH . E 5 HOH A 22 488 24 HOH HOH . E 5 HOH A 23 489 25 HOH HOH . E 5 HOH A 24 490 26 HOH HOH . E 5 HOH A 25 491 27 HOH HOH . E 5 HOH A 26 492 28 HOH HOH . E 5 HOH A 27 493 29 HOH HOH . E 5 HOH A 28 494 30 HOH HOH . E 5 HOH A 29 495 31 HOH HOH . E 5 HOH A 30 496 32 HOH HOH . E 5 HOH A 31 497 33 HOH HOH . E 5 HOH A 32 498 34 HOH HOH . E 5 HOH A 33 499 35 HOH HOH . E 5 HOH A 34 500 36 HOH HOH . E 5 HOH A 35 503 37 HOH HOH . E 5 HOH A 36 504 38 HOH HOH . E 5 HOH A 37 505 39 HOH HOH . E 5 HOH A 38 506 40 HOH HOH . E 5 HOH A 39 507 41 HOH HOH . E 5 HOH A 40 508 42 HOH HOH . E 5 HOH A 41 509 43 HOH HOH . E 5 HOH A 42 510 44 HOH HOH . E 5 HOH A 43 511 45 HOH HOH . E 5 HOH A 44 512 46 HOH HOH . E 5 HOH A 45 513 1 HOH HOH . E 5 HOH A 46 514 2 HOH HOH . E 5 HOH A 47 515 3 HOH HOH . E 5 HOH A 48 516 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTE . . . B 2 -8.327 -19.824 -31.56 1 30.42 ? N1 MTE 501 A 1 HETATM 2 C C2 MTE . . . B 2 -9.295 -18.897 -31.695 1 31.59 ? C2 MTE 501 A 1 HETATM 3 N N2 MTE . . . B 2 -9.767 -18.269 -30.587 1 33.49 ? N2 MTE 501 A 1 HETATM 4 N N3 MTE . . . B 2 -9.832 -18.563 -32.877 1 32.09 ? N3 MTE 501 A 1 HETATM 5 C C4 MTE . . . B 2 -9.441 -19.101 -34.037 1 30.33 ? C4 MTE 501 A 1 HETATM 6 O O4 MTE . . . B 2 -9.966 -18.754 -35.124 1 27.27 ? O4 MTE 501 A 1 HETATM 7 N N5 MTE . . . B 2 -7.944 -20.76 -35.057 1 27.54 ? N5 MTE 501 A 1 HETATM 8 C C6 MTE . . . B 2 -7.405 -22.084 -34.843 1 27.47 ? C6 MTE 501 A 1 HETATM 9 C C7 MTE . . . B 2 -6.359 -22.07 -33.748 1 26.8 ? C7 MTE 501 A 1 HETATM 10 N N8 MTE . . . B 2 -6.864 -21.425 -32.529 1 29.59 ? N8 MTE 501 A 1 HETATM 11 C C9 MTE . . . B 2 -8.394 -20.126 -33.97 1 29.34 ? C9 MTE 501 A 1 HETATM 12 C C10 MTE . . . B 2 -7.843 -20.473 -32.633 1 31.05 ? C10 MTE 501 A 1 HETATM 13 C C1' MTE . . . B 2 -6.828 -22.673 -36.092 1 27.45 ? C1' MTE 501 A 1 HETATM 14 S S1' MTE . . . B 2 -7.957 -23.335 -37.154 1 28.23 ? S1' MTE 501 A 1 HETATM 15 C C2' MTE . . . B 2 -5.513 -22.72 -36.317 1 28.87 ? C2' MTE 501 A 1 HETATM 16 S S2' MTE . . . B 2 -4.857 -23.541 -37.686 1 26 ? S2' MTE 501 A 1 HETATM 17 C C3' MTE . . . B 2 -4.591 -22.094 -35.278 1 29 ? C3' MTE 501 A 1 HETATM 18 O O3' MTE . . . B 2 -5.323 -21.318 -34.334 1 25.46 ? O3' MTE 501 A 1 HETATM 19 C C4' MTE . . . B 2 -3.573 -21.164 -35.935 1 28.46 ? C4' MTE 501 A 1 HETATM 20 O O4' MTE . . . B 2 -2.562 -20.831 -34.99 1 29.23 ? O4' MTE 501 A 1 HETATM 21 P P MTE . . . B 2 -1.655 -19.554 -35.321 1 30.82 ? P MTE 501 A 1 HETATM 22 O O1P MTE . . . B 2 -0.706 -20.021 -36.4 1 34.6 ? O1P MTE 501 A 1 HETATM 23 O O2P MTE . . . B 2 -0.889 -19.23 -34.061 1 30.69 ? O2P MTE 501 A 1 HETATM 24 O O3P MTE . . . B 2 -2.721 -18.576 -35.774 1 30.92 ? O3P MTE 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #