data_3HBT # _model_server_result.job_id B4L-Dz5rMATa9nl5DvjcNQ _model_server_result.datetime_utc '2024-11-15 15:22:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hbt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1401}' # _entry.id 3HBT # _exptl.entry_id 3HBT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3HBT _cell.length_a 95.731 _cell.length_b 95.731 _cell.length_c 96.948 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HBT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 E O HOH . A HOH 377 1_555 C CA CA . A CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc2 E O HOH . A HOH 380 1_555 C CA CA . A CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc3 E O HOH . A HOH 384 1_555 C CA CA . A CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc4 E O HOH . A HOH 388 1_555 C CA CA . A CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc5 E O HOH . A HOH 389 1_555 C CA CA . A CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc6 D O3G ATP . A ATP 1380 1_555 C CA CA . A CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc7 D O2B ATP . A ATP 1380 1_555 C CA CA . A CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HBT _atom_sites.fract_transf_matrix[1][1] 0.010446 _atom_sites.fract_transf_matrix[1][2] 0.006031 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 500 500 SO4 SO4 . C 3 CA A 1 1401 1401 CA CA . D 4 ATP A 1 1380 1380 ATP ATP . E 5 HOH A 1 376 1 HOH HOH . E 5 HOH A 2 377 2 HOH HOH . E 5 HOH A 3 378 378 HOH HOH . E 5 HOH A 4 379 4 HOH HOH . E 5 HOH A 5 380 5 HOH HOH . E 5 HOH A 6 381 7 HOH HOH . E 5 HOH A 7 382 8 HOH HOH . E 5 HOH A 8 383 10 HOH HOH . E 5 HOH A 9 384 11 HOH HOH . E 5 HOH A 10 385 13 HOH HOH . E 5 HOH A 11 386 17 HOH HOH . E 5 HOH A 12 387 387 HOH HOH . E 5 HOH A 13 388 18 HOH HOH . E 5 HOH A 14 389 21 HOH HOH . E 5 HOH A 15 390 22 HOH HOH . E 5 HOH A 16 391 23 HOH HOH . E 5 HOH A 17 392 26 HOH HOH . E 5 HOH A 18 393 27 HOH HOH . E 5 HOH A 19 394 29 HOH HOH . E 5 HOH A 20 395 30 HOH HOH . E 5 HOH A 21 396 33 HOH HOH . E 5 HOH A 22 397 38 HOH HOH . E 5 HOH A 23 398 40 HOH HOH . E 5 HOH A 24 399 42 HOH HOH . E 5 HOH A 25 400 43 HOH HOH . E 5 HOH A 26 401 49 HOH HOH . E 5 HOH A 27 402 50 HOH HOH . E 5 HOH A 28 403 54 HOH HOH . E 5 HOH A 29 404 58 HOH HOH . E 5 HOH A 30 405 60 HOH HOH . E 5 HOH A 31 406 71 HOH HOH . E 5 HOH A 32 407 72 HOH HOH . E 5 HOH A 33 408 74 HOH HOH . E 5 HOH A 34 409 99 HOH HOH . E 5 HOH A 35 410 108 HOH HOH . E 5 HOH A 36 411 124 HOH HOH . E 5 HOH A 37 412 130 HOH HOH . E 5 HOH A 38 413 131 HOH HOH . E 5 HOH A 39 414 133 HOH HOH . E 5 HOH A 40 415 141 HOH HOH . E 5 HOH A 41 416 143 HOH HOH . E 5 HOH A 42 417 144 HOH HOH . E 5 HOH A 43 418 156 HOH HOH . E 5 HOH A 44 419 168 HOH HOH . E 5 HOH A 45 420 177 HOH HOH . E 5 HOH A 46 421 182 HOH HOH . E 5 HOH A 47 422 191 HOH HOH . E 5 HOH A 48 423 211 HOH HOH . E 5 HOH A 49 424 222 HOH HOH . E 5 HOH A 50 425 223 HOH HOH . E 5 HOH A 51 426 260 HOH HOH . E 5 HOH A 52 427 261 HOH HOH . E 5 HOH A 53 428 263 HOH HOH . E 5 HOH A 54 429 302 HOH HOH . E 5 HOH A 55 430 315 HOH HOH . E 5 HOH A 56 431 337 HOH HOH . E 5 HOH A 57 432 340 HOH HOH . E 5 HOH A 58 433 343 HOH HOH . E 5 HOH A 59 434 345 HOH HOH . E 5 HOH A 60 435 357 HOH HOH . E 5 HOH A 61 436 372 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 44.186 _atom_site.Cartn_y 7.107 _atom_site.Cartn_z 42.152 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #