data_3HC1 # _model_server_result.job_id k9FsABaBW2BoQFXtDkdj1w _model_server_result.datetime_utc '2024-11-05 00:30:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hc1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":309}' # _entry.id 3HC1 # _exptl.entry_id 3HC1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.96 _cell.angle_gamma 90 _cell.entry_id 3HC1 _cell.length_a 47.567 _cell.length_b 66.631 _cell.length_c 54.412 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 19 A PHE 18 1_555 A N MSE 20 A MSE 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 20 A MSE 19 1_555 A N SER 21 A SER 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ALA 232 A ALA 231 1_555 A N MSE 233 A MSE 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale4 A C MSE 233 A MSE 232 1_555 A N VAL 234 A VAL 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? metalc ? metalc1 A NE2 HIS 122 A HIS 121 1_555 C FE FE . A FE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc2 A NE2 HIS 152 A HIS 151 1_555 C FE FE . A FE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 A OD1 ASP 153 A ASP 152 1_555 B FE FE . A FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc4 A OD2 ASP 153 A ASP 152 1_555 C FE FE . A FE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc5 A NE2 HIS 193 A HIS 192 1_555 B FE FE . A FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc6 A NE2 HIS 217 A HIS 216 1_555 B FE FE . A FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc7 A NE2 HIS 218 A HIS 217 1_555 B FE FE . A FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc8 A OD1 ASP 238 A ASP 237 1_555 C FE FE . A FE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc9 A OE2 GLU 249 A GLU 248 1_555 B FE FE . A FE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc10 A OE1 GLU 249 A GLU 248 1_555 C FE FE . A FE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc11 B FE FE . A FE 305 1_555 J O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc12 C FE FE . A FE 306 1_555 J O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 3HC1 _atom_sites.fract_transf_matrix[1][1] 0.021023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008475 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 305 1 FE FE . C 2 FE A 1 306 2 FE FE . D 3 CL A 1 307 3 CL CL . E 4 K A 1 308 4 K K . F 5 GOL A 1 309 5 GOL GOL . G 5 GOL A 1 310 6 GOL GOL . H 5 GOL A 1 311 7 GOL GOL . I 5 GOL A 1 312 8 GOL GOL . J 6 HOH A 1 313 9 HOH HOH . J 6 HOH A 2 314 10 HOH HOH . J 6 HOH A 3 315 11 HOH HOH . J 6 HOH A 4 316 12 HOH HOH . J 6 HOH A 5 317 13 HOH HOH . J 6 HOH A 6 318 14 HOH HOH . J 6 HOH A 7 319 15 HOH HOH . J 6 HOH A 8 320 16 HOH HOH . J 6 HOH A 9 321 17 HOH HOH . J 6 HOH A 10 322 18 HOH HOH . J 6 HOH A 11 323 19 HOH HOH . J 6 HOH A 12 324 20 HOH HOH . J 6 HOH A 13 325 21 HOH HOH . J 6 HOH A 14 326 22 HOH HOH . J 6 HOH A 15 327 23 HOH HOH . J 6 HOH A 16 328 24 HOH HOH . J 6 HOH A 17 329 25 HOH HOH . J 6 HOH A 18 330 26 HOH HOH . J 6 HOH A 19 331 27 HOH HOH . J 6 HOH A 20 332 28 HOH HOH . J 6 HOH A 21 333 29 HOH HOH . J 6 HOH A 22 334 30 HOH HOH . J 6 HOH A 23 335 31 HOH HOH . J 6 HOH A 24 336 32 HOH HOH . J 6 HOH A 25 337 33 HOH HOH . J 6 HOH A 26 338 34 HOH HOH . J 6 HOH A 27 339 35 HOH HOH . J 6 HOH A 28 340 36 HOH HOH . J 6 HOH A 29 341 37 HOH HOH . J 6 HOH A 30 342 38 HOH HOH . J 6 HOH A 31 343 39 HOH HOH . J 6 HOH A 32 344 40 HOH HOH . J 6 HOH A 33 345 41 HOH HOH . J 6 HOH A 34 346 42 HOH HOH . J 6 HOH A 35 347 43 HOH HOH . J 6 HOH A 36 348 44 HOH HOH . J 6 HOH A 37 349 45 HOH HOH . J 6 HOH A 38 350 46 HOH HOH . J 6 HOH A 39 351 47 HOH HOH . J 6 HOH A 40 352 48 HOH HOH . J 6 HOH A 41 353 49 HOH HOH . J 6 HOH A 42 354 50 HOH HOH . J 6 HOH A 43 355 51 HOH HOH . J 6 HOH A 44 356 52 HOH HOH . J 6 HOH A 45 357 53 HOH HOH . J 6 HOH A 46 358 54 HOH HOH . J 6 HOH A 47 359 55 HOH HOH . J 6 HOH A 48 360 56 HOH HOH . J 6 HOH A 49 361 57 HOH HOH . J 6 HOH A 50 362 58 HOH HOH . J 6 HOH A 51 363 59 HOH HOH . J 6 HOH A 52 364 60 HOH HOH . J 6 HOH A 53 365 61 HOH HOH . J 6 HOH A 54 366 62 HOH HOH . J 6 HOH A 55 367 63 HOH HOH . J 6 HOH A 56 368 64 HOH HOH . J 6 HOH A 57 369 65 HOH HOH . J 6 HOH A 58 370 66 HOH HOH . J 6 HOH A 59 371 67 HOH HOH . J 6 HOH A 60 372 68 HOH HOH . J 6 HOH A 61 373 69 HOH HOH . J 6 HOH A 62 374 70 HOH HOH . J 6 HOH A 63 375 71 HOH HOH . J 6 HOH A 64 376 72 HOH HOH . J 6 HOH A 65 377 73 HOH HOH . J 6 HOH A 66 378 74 HOH HOH . J 6 HOH A 67 379 75 HOH HOH . J 6 HOH A 68 380 76 HOH HOH . J 6 HOH A 69 381 77 HOH HOH . J 6 HOH A 70 382 78 HOH HOH . J 6 HOH A 71 383 79 HOH HOH . J 6 HOH A 72 384 80 HOH HOH . J 6 HOH A 73 385 81 HOH HOH . J 6 HOH A 74 386 82 HOH HOH . J 6 HOH A 75 387 83 HOH HOH . J 6 HOH A 76 388 84 HOH HOH . J 6 HOH A 77 389 85 HOH HOH . J 6 HOH A 78 390 86 HOH HOH . J 6 HOH A 79 391 87 HOH HOH . J 6 HOH A 80 392 88 HOH HOH . J 6 HOH A 81 393 89 HOH HOH . J 6 HOH A 82 394 90 HOH HOH . J 6 HOH A 83 395 91 HOH HOH . J 6 HOH A 84 396 92 HOH HOH . J 6 HOH A 85 397 93 HOH HOH . J 6 HOH A 86 398 94 HOH HOH . J 6 HOH A 87 399 95 HOH HOH . J 6 HOH A 88 400 96 HOH HOH . J 6 HOH A 89 401 97 HOH HOH . J 6 HOH A 90 402 98 HOH HOH . J 6 HOH A 91 403 99 HOH HOH . J 6 HOH A 92 404 100 HOH HOH . J 6 HOH A 93 405 101 HOH HOH . J 6 HOH A 94 406 102 HOH HOH . J 6 HOH A 95 407 103 HOH HOH . J 6 HOH A 96 408 104 HOH HOH . J 6 HOH A 97 409 105 HOH HOH . J 6 HOH A 98 410 106 HOH HOH . J 6 HOH A 99 411 107 HOH HOH . J 6 HOH A 100 412 108 HOH HOH . J 6 HOH A 101 413 109 HOH HOH . J 6 HOH A 102 414 110 HOH HOH . J 6 HOH A 103 415 111 HOH HOH . J 6 HOH A 104 416 112 HOH HOH . J 6 HOH A 105 417 113 HOH HOH . J 6 HOH A 106 418 114 HOH HOH . J 6 HOH A 107 419 115 HOH HOH . J 6 HOH A 108 420 116 HOH HOH . J 6 HOH A 109 421 117 HOH HOH . J 6 HOH A 110 422 118 HOH HOH . J 6 HOH A 111 423 119 HOH HOH . J 6 HOH A 112 424 120 HOH HOH . J 6 HOH A 113 425 121 HOH HOH . J 6 HOH A 114 426 122 HOH HOH . J 6 HOH A 115 427 123 HOH HOH . J 6 HOH A 116 428 124 HOH HOH . J 6 HOH A 117 429 125 HOH HOH . J 6 HOH A 118 430 126 HOH HOH . J 6 HOH A 119 431 127 HOH HOH . J 6 HOH A 120 432 128 HOH HOH . J 6 HOH A 121 433 129 HOH HOH . J 6 HOH A 122 434 130 HOH HOH . J 6 HOH A 123 435 131 HOH HOH . J 6 HOH A 124 436 132 HOH HOH . J 6 HOH A 125 437 133 HOH HOH . J 6 HOH A 126 438 134 HOH HOH . J 6 HOH A 127 439 135 HOH HOH . J 6 HOH A 128 440 136 HOH HOH . J 6 HOH A 129 441 137 HOH HOH . J 6 HOH A 130 442 138 HOH HOH . J 6 HOH A 131 443 139 HOH HOH . J 6 HOH A 132 444 140 HOH HOH . J 6 HOH A 133 445 141 HOH HOH . J 6 HOH A 134 446 142 HOH HOH . J 6 HOH A 135 447 143 HOH HOH . J 6 HOH A 136 448 144 HOH HOH . J 6 HOH A 137 449 145 HOH HOH . J 6 HOH A 138 450 146 HOH HOH . J 6 HOH A 139 451 147 HOH HOH . J 6 HOH A 140 452 148 HOH HOH . J 6 HOH A 141 453 149 HOH HOH . J 6 HOH A 142 454 150 HOH HOH . J 6 HOH A 143 455 151 HOH HOH . J 6 HOH A 144 456 152 HOH HOH . J 6 HOH A 145 457 153 HOH HOH . J 6 HOH A 146 458 154 HOH HOH . J 6 HOH A 147 459 155 HOH HOH . J 6 HOH A 148 460 156 HOH HOH . J 6 HOH A 149 461 157 HOH HOH . J 6 HOH A 150 462 158 HOH HOH . J 6 HOH A 151 463 159 HOH HOH . J 6 HOH A 152 464 160 HOH HOH . J 6 HOH A 153 465 161 HOH HOH . J 6 HOH A 154 466 162 HOH HOH . J 6 HOH A 155 467 163 HOH HOH . J 6 HOH A 156 468 164 HOH HOH . J 6 HOH A 157 469 165 HOH HOH . J 6 HOH A 158 470 166 HOH HOH . J 6 HOH A 159 471 167 HOH HOH . J 6 HOH A 160 472 168 HOH HOH . J 6 HOH A 161 473 169 HOH HOH . J 6 HOH A 162 474 170 HOH HOH . J 6 HOH A 163 475 171 HOH HOH . J 6 HOH A 164 476 172 HOH HOH . J 6 HOH A 165 477 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 -16.833 40.491 10.072 1 63.59 ? C1 GOL 309 A 1 HETATM 2 O O1 GOL . . . F 5 -15.694 41.288 10.277 1 63.43 ? O1 GOL 309 A 1 HETATM 3 C C2 GOL . . . F 5 -16.494 39.452 9.025 1 63.86 ? C2 GOL 309 A 1 HETATM 4 O O2 GOL . . . F 5 -15.985 40.037 7.844 1 65.96 ? O2 GOL 309 A 1 HETATM 5 C C3 GOL . . . F 5 -15.433 38.525 9.579 1 60.7 ? C3 GOL 309 A 1 HETATM 6 O O3 GOL . . . F 5 -15.036 37.666 8.546 1 57.91 ? O3 GOL 309 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #