data_3HCB # _model_server_result.job_id SL37jmhvspUfJmLPWHhr1w _model_server_result.datetime_utc '2024-11-06 11:25:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hcb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":3002}' # _entry.id 3HCB # _exptl.entry_id 3HCB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.146 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-3-hydroxy-2,3-dihydro-1H-indole-5,6-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HCB _cell.length_a 94.21 _cell.length_b 94.21 _cell.length_c 187.9 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HCB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F,G 2 1 A,B,C,D,E,F,G 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C8 H7 N O3' _chem_comp.formula_weight 165.146 _chem_comp.id LT2 _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-3-hydroxy-2,3-dihydro-1H-indole-5,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAG CAF LT2 sing 194 n n CAL CAF LT2 sing 195 n n CAF HAF LT2 sing 196 n n CAF HAFA LT2 sing 197 n n CAH NAG LT2 sing 198 n n NAG HNAG LT2 sing 199 n n CAD CAH LT2 doub 200 n n CAH CAI LT2 sing 201 n n CAJ CAD LT2 sing 202 n n CAD HAD LT2 sing 203 n n OAA CAJ LT2 doub 204 n n CAJ CAK LT2 sing 205 n n OAB CAK LT2 doub 206 n n CAK CAE LT2 sing 207 n n CAE CAI LT2 doub 208 n n CAE HAE LT2 sing 209 n n CAI CAL LT2 sing 210 n n CAL OAC LT2 sing 211 n n CAL HAL LT2 sing 212 n n OAC HOAC LT2 sing 213 n n # _atom_sites.entry_id 3HCB _atom_sites.fract_transf_matrix[1][1] 0.010615 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 2001 2001 SAH SAH . D 3 LT2 A 1 3001 3001 LT2 LT2 . E 2 SAH B 1 2002 2002 SAH SAH . F 3 LT2 B 1 3002 3002 LT2 LT2 . G 4 HOH B 1 290 1 HOH HOH . G 4 HOH B 2 291 2 HOH HOH . G 4 HOH B 3 292 3 HOH HOH . G 4 HOH B 4 293 4 HOH HOH . G 4 HOH B 5 294 5 HOH HOH . G 4 HOH B 6 295 6 HOH HOH . G 4 HOH B 7 296 7 HOH HOH . G 4 HOH B 8 297 8 HOH HOH . G 4 HOH B 9 298 9 HOH HOH . G 4 HOH B 10 299 10 HOH HOH . G 4 HOH B 11 300 11 HOH HOH . G 4 HOH B 12 301 12 HOH HOH . G 4 HOH B 13 302 13 HOH HOH . G 4 HOH B 14 303 14 HOH HOH . G 4 HOH B 15 304 15 HOH HOH . G 4 HOH B 16 305 16 HOH HOH . G 4 HOH B 17 306 17 HOH HOH . G 4 HOH B 18 307 18 HOH HOH . G 4 HOH B 19 308 19 HOH HOH . G 4 HOH B 20 309 20 HOH HOH . G 4 HOH B 21 310 21 HOH HOH . G 4 HOH B 22 311 22 HOH HOH . G 4 HOH B 23 312 23 HOH HOH . G 4 HOH B 24 313 24 HOH HOH . G 4 HOH B 25 314 25 HOH HOH . G 4 HOH B 26 315 26 HOH HOH . G 4 HOH B 27 316 27 HOH HOH . G 4 HOH B 28 317 28 HOH HOH . G 4 HOH B 29 318 29 HOH HOH . G 4 HOH B 30 319 30 HOH HOH . G 4 HOH B 31 320 31 HOH HOH . G 4 HOH B 32 321 32 HOH HOH . G 4 HOH B 33 322 33 HOH HOH . G 4 HOH B 34 323 34 HOH HOH . G 4 HOH B 35 324 35 HOH HOH . G 4 HOH B 36 325 36 HOH HOH . G 4 HOH B 37 326 37 HOH HOH . G 4 HOH B 38 327 38 HOH HOH . G 4 HOH B 39 328 39 HOH HOH . G 4 HOH B 40 329 40 HOH HOH . G 4 HOH B 41 330 41 HOH HOH . G 4 HOH B 42 331 42 HOH HOH . G 4 HOH B 43 332 43 HOH HOH . G 4 HOH B 44 333 44 HOH HOH . G 4 HOH B 45 334 45 HOH HOH . G 4 HOH B 46 335 46 HOH HOH . G 4 HOH B 47 336 47 HOH HOH . G 4 HOH B 48 337 48 HOH HOH . G 4 HOH B 49 338 49 HOH HOH . G 4 HOH B 50 339 50 HOH HOH . G 4 HOH B 51 340 51 HOH HOH . G 4 HOH B 52 341 52 HOH HOH . G 4 HOH B 53 342 53 HOH HOH . G 4 HOH B 54 343 54 HOH HOH . G 4 HOH B 55 344 55 HOH HOH . G 4 HOH B 56 345 56 HOH HOH . G 4 HOH B 57 346 57 HOH HOH . G 4 HOH B 58 347 58 HOH HOH . G 4 HOH B 59 348 59 HOH HOH . G 4 HOH B 60 349 60 HOH HOH . G 4 HOH B 61 350 61 HOH HOH . G 4 HOH B 62 351 62 HOH HOH . G 4 HOH B 63 352 63 HOH HOH . G 4 HOH B 64 353 64 HOH HOH . G 4 HOH B 65 354 65 HOH HOH . G 4 HOH B 66 355 66 HOH HOH . G 4 HOH B 67 356 67 HOH HOH . G 4 HOH B 68 357 68 HOH HOH . G 4 HOH B 69 358 69 HOH HOH . G 4 HOH B 70 359 70 HOH HOH . G 4 HOH B 71 360 71 HOH HOH . G 4 HOH B 72 361 72 HOH HOH . G 4 HOH B 73 362 73 HOH HOH . G 4 HOH B 74 363 74 HOH HOH . G 4 HOH B 75 364 75 HOH HOH . G 4 HOH B 76 365 76 HOH HOH . G 4 HOH B 77 366 77 HOH HOH . G 4 HOH B 78 367 78 HOH HOH . G 4 HOH B 79 368 79 HOH HOH . G 4 HOH B 80 369 80 HOH HOH . G 4 HOH B 81 370 81 HOH HOH . G 4 HOH B 82 371 82 HOH HOH . G 4 HOH B 83 372 83 HOH HOH . G 4 HOH B 84 373 84 HOH HOH . G 4 HOH B 85 374 85 HOH HOH . G 4 HOH B 86 375 86 HOH HOH . G 4 HOH B 87 376 87 HOH HOH . G 4 HOH B 88 377 88 HOH HOH . G 4 HOH B 89 378 89 HOH HOH . G 4 HOH B 90 379 90 HOH HOH . G 4 HOH B 91 380 91 HOH HOH . G 4 HOH B 92 381 92 HOH HOH . G 4 HOH B 93 382 93 HOH HOH . G 4 HOH B 94 383 94 HOH HOH . G 4 HOH B 95 384 95 HOH HOH . G 4 HOH B 96 385 96 HOH HOH . G 4 HOH B 97 386 97 HOH HOH . G 4 HOH B 98 387 98 HOH HOH . G 4 HOH B 99 388 99 HOH HOH . G 4 HOH B 100 389 100 HOH HOH . G 4 HOH B 101 390 101 HOH HOH . G 4 HOH B 102 391 102 HOH HOH . G 4 HOH B 103 392 103 HOH HOH . G 4 HOH B 104 393 104 HOH HOH . G 4 HOH B 105 394 105 HOH HOH . G 4 HOH B 106 395 106 HOH HOH . G 4 HOH B 107 396 107 HOH HOH . G 4 HOH B 108 397 108 HOH HOH . G 4 HOH B 109 398 109 HOH HOH . G 4 HOH B 110 399 110 HOH HOH . G 4 HOH B 111 400 111 HOH HOH . G 4 HOH B 112 401 112 HOH HOH . G 4 HOH B 113 402 113 HOH HOH . G 4 HOH B 114 403 114 HOH HOH . G 4 HOH B 115 404 115 HOH HOH . G 4 HOH B 116 405 116 HOH HOH . G 4 HOH B 117 406 117 HOH HOH . G 4 HOH B 118 407 118 HOH HOH . G 4 HOH B 119 408 119 HOH HOH . G 4 HOH B 120 409 120 HOH HOH . G 4 HOH B 121 410 121 HOH HOH . G 4 HOH B 122 411 122 HOH HOH . G 4 HOH B 123 412 123 HOH HOH . G 4 HOH B 124 413 124 HOH HOH . G 4 HOH B 125 414 125 HOH HOH . G 4 HOH B 126 415 126 HOH HOH . G 4 HOH B 127 416 127 HOH HOH . G 4 HOH B 128 417 128 HOH HOH . G 4 HOH B 129 418 129 HOH HOH . G 4 HOH B 130 419 130 HOH HOH . G 4 HOH B 131 420 131 HOH HOH . G 4 HOH B 132 421 132 HOH HOH . G 4 HOH B 133 422 133 HOH HOH . G 4 HOH B 134 423 134 HOH HOH . G 4 HOH B 135 424 135 HOH HOH . G 4 HOH B 136 425 136 HOH HOH . G 4 HOH B 137 426 137 HOH HOH . G 4 HOH B 138 427 138 HOH HOH . G 4 HOH B 139 428 139 HOH HOH . G 4 HOH B 140 429 140 HOH HOH . G 4 HOH B 141 430 141 HOH HOH . G 4 HOH B 142 431 142 HOH HOH . G 4 HOH B 143 432 143 HOH HOH . G 4 HOH B 144 433 144 HOH HOH . G 4 HOH B 145 434 145 HOH HOH . G 4 HOH B 146 435 146 HOH HOH . G 4 HOH B 147 436 147 HOH HOH . G 4 HOH B 148 437 148 HOH HOH . G 4 HOH B 149 438 149 HOH HOH . G 4 HOH B 150 439 150 HOH HOH . G 4 HOH B 151 440 151 HOH HOH . G 4 HOH B 152 441 152 HOH HOH . G 4 HOH B 153 442 153 HOH HOH . G 4 HOH B 154 443 154 HOH HOH . G 4 HOH B 155 444 155 HOH HOH . G 4 HOH B 156 445 156 HOH HOH . G 4 HOH B 157 446 157 HOH HOH . G 4 HOH B 158 447 158 HOH HOH . G 4 HOH B 159 448 159 HOH HOH . G 4 HOH B 160 449 160 HOH HOH . G 4 HOH B 161 450 161 HOH HOH . G 4 HOH B 162 451 162 HOH HOH . G 4 HOH B 163 452 163 HOH HOH . G 4 HOH B 164 453 164 HOH HOH . G 4 HOH B 165 454 165 HOH HOH . G 4 HOH B 166 455 166 HOH HOH . G 4 HOH B 167 456 167 HOH HOH . G 4 HOH B 168 457 168 HOH HOH . G 4 HOH B 169 458 169 HOH HOH . G 4 HOH B 170 459 170 HOH HOH . G 4 HOH B 171 460 171 HOH HOH . G 4 HOH B 172 461 172 HOH HOH . G 4 HOH B 173 462 173 HOH HOH . G 4 HOH B 174 463 174 HOH HOH . G 4 HOH B 175 464 175 HOH HOH . G 4 HOH B 176 465 176 HOH HOH . G 4 HOH B 177 466 177 HOH HOH . G 4 HOH B 178 467 178 HOH HOH . G 4 HOH B 179 468 179 HOH HOH . G 4 HOH B 180 469 180 HOH HOH . G 4 HOH B 181 470 181 HOH HOH . G 4 HOH B 182 471 182 HOH HOH . G 4 HOH B 183 472 183 HOH HOH . G 4 HOH B 184 473 184 HOH HOH . G 4 HOH B 185 474 185 HOH HOH . G 4 HOH B 186 475 186 HOH HOH . G 4 HOH B 187 476 187 HOH HOH . G 4 HOH B 188 477 188 HOH HOH . G 4 HOH B 189 478 189 HOH HOH . G 4 HOH B 190 479 190 HOH HOH . G 4 HOH B 191 480 191 HOH HOH . G 4 HOH B 192 481 192 HOH HOH . G 4 HOH B 193 482 193 HOH HOH . G 4 HOH B 194 483 194 HOH HOH . G 4 HOH B 195 484 195 HOH HOH . G 4 HOH B 196 485 196 HOH HOH . G 4 HOH B 197 486 197 HOH HOH . G 4 HOH B 198 487 198 HOH HOH . G 4 HOH B 199 488 199 HOH HOH . G 4 HOH B 200 489 200 HOH HOH . G 4 HOH B 201 490 201 HOH HOH . G 4 HOH B 202 491 202 HOH HOH . G 4 HOH B 203 492 203 HOH HOH . G 4 HOH B 204 493 204 HOH HOH . G 4 HOH B 205 494 205 HOH HOH . G 4 HOH B 206 495 206 HOH HOH . G 4 HOH B 207 496 207 HOH HOH . G 4 HOH B 208 497 208 HOH HOH . G 4 HOH B 209 498 209 HOH HOH . G 4 HOH B 210 499 210 HOH HOH . G 4 HOH B 211 500 211 HOH HOH . G 4 HOH B 212 501 212 HOH HOH . G 4 HOH B 213 502 213 HOH HOH . G 4 HOH B 214 503 214 HOH HOH . G 4 HOH B 215 504 215 HOH HOH . G 4 HOH B 216 505 216 HOH HOH . G 4 HOH B 217 506 217 HOH HOH . G 4 HOH B 218 507 218 HOH HOH . G 4 HOH B 219 508 219 HOH HOH . G 4 HOH B 220 509 220 HOH HOH . G 4 HOH B 221 510 221 HOH HOH . G 4 HOH B 222 511 222 HOH HOH . G 4 HOH B 223 512 223 HOH HOH . G 4 HOH B 224 513 224 HOH HOH . G 4 HOH B 225 514 225 HOH HOH . G 4 HOH B 226 515 226 HOH HOH . G 4 HOH B 227 516 227 HOH HOH . G 4 HOH B 228 517 228 HOH HOH . G 4 HOH B 229 518 229 HOH HOH . G 4 HOH B 230 519 230 HOH HOH . G 4 HOH B 231 520 231 HOH HOH . G 4 HOH B 232 521 232 HOH HOH . G 4 HOH B 233 522 233 HOH HOH . G 4 HOH B 234 523 234 HOH HOH . G 4 HOH B 235 524 235 HOH HOH . G 4 HOH B 236 525 236 HOH HOH . G 4 HOH B 237 526 237 HOH HOH . G 4 HOH B 238 527 238 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAF LT2 . . . F 3 25.321 58.893 -23.864 1 75.78 ? CAF LT2 3002 B 1 HETATM 2 N NAG LT2 . . . F 3 26.046 58.174 -24.926 1 74.67 ? NAG LT2 3002 B 1 HETATM 3 C CAH LT2 . . . F 3 26.154 58.928 -26.022 1 68.82 ? CAH LT2 3002 B 1 HETATM 4 C CAD LT2 . . . F 3 26.983 58.791 -27.132 1 68.43 ? CAD LT2 3002 B 1 HETATM 5 C CAJ LT2 . . . F 3 26.911 59.717 -28.17 1 72.58 ? CAJ LT2 3002 B 1 HETATM 6 O OAA LT2 . . . F 3 27.634 59.619 -29.162 1 72.92 ? OAA LT2 3002 B 1 HETATM 7 C CAK LT2 . . . F 3 26.013 60.77 -28.092 1 70.91 ? CAK LT2 3002 B 1 HETATM 8 O OAB LT2 . . . F 3 25.963 61.575 -29.01 1 72.61 ? OAB LT2 3002 B 1 HETATM 9 C CAE LT2 . . . F 3 25.182 60.913 -26.991 1 67.77 ? CAE LT2 3002 B 1 HETATM 10 C CAI LT2 . . . F 3 25.253 59.994 -25.955 1 69.95 ? CAI LT2 3002 B 1 HETATM 11 C CAL LT2 . . . F 3 24.479 59.893 -24.643 1 74.23 ? CAL LT2 3002 B 1 HETATM 12 O OAC LT2 . . . F 3 24.489 61.154 -23.968 1 76.35 ? OAC LT2 3002 B 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #