data_3HCE
#
_model_server_result.job_id            kt_bskV-fNOlUjPwvxPuKg 
_model_server_result.datetime_utc      '2024-11-04 23:09:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hce 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":290}' 
#
_entry.id    3HCE 
#
_exptl.entry_id    3HCE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HCE 
_cell.length_a            93.691 
_cell.length_b            93.691 
_cell.length_c            187.221 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HCE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
A,B,C,D,E,F,G,H 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 299 n n 
N HN1 SAH sing 300 n n 
N HN2 SAH sing 301 n n 
CA CB SAH sing 302 n n 
CA C SAH sing 303 n n 
CA HA SAH sing 304 n n 
CB CG SAH sing 305 n n 
CB HB1 SAH sing 306 n n 
CB HB2 SAH sing 307 n n 
CG SD SAH sing 308 n n 
CG HG1 SAH sing 309 n n 
CG HG2 SAH sing 310 n n 
SD C5' SAH sing 311 n n 
C O SAH doub 312 n n 
C OXT SAH sing 313 n n 
OXT HXT SAH sing 314 n n 
C5' C4' SAH sing 315 n n 
C5' "H5'1" SAH sing 316 n n 
C5' "H5'2" SAH sing 317 n n 
C4' O4' SAH sing 318 n n 
C4' C3' SAH sing 319 n n 
C4' H4' SAH sing 320 n n 
O4' C1' SAH sing 321 n n 
C3' O3' SAH sing 322 n n 
C3' C2' SAH sing 323 n n 
C3' H3' SAH sing 324 n n 
O3' HO3' SAH sing 325 n n 
C2' O2' SAH sing 326 n n 
C2' C1' SAH sing 327 n n 
C2' H2' SAH sing 328 n n 
O2' HO2' SAH sing 329 n n 
C1' N9 SAH sing 330 n n 
C1' H1' SAH sing 331 n n 
N9 C8 SAH sing 332 n y 
N9 C4 SAH sing 333 n y 
C8 N7 SAH doub 334 n y 
C8 H8 SAH sing 335 n n 
N7 C5 SAH sing 336 n y 
C5 C6 SAH sing 337 n y 
C5 C4 SAH doub 338 n y 
C6 N6 SAH sing 339 n n 
C6 N1 SAH doub 340 n y 
N6 HN61 SAH sing 341 n n 
N6 HN62 SAH sing 342 n n 
N1 C2 SAH sing 343 n y 
C2 N3 SAH doub 344 n y 
C2 H2 SAH sing 345 n n 
N3 C4 SAH sing 346 n y 
#
_atom_sites.entry_id                     3HCE 
_atom_sites.fract_transf_matrix[1][1]    0.010673 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010673 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005341 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 290 1 SAH SAH . 
D 3 OTR A 1 291 1 OTR OTR . 
E 2 SAH B 1 290 2 SAH SAH . 
F 3 OTR B 1 291 2 OTR OTR . 
G 4 HOH A 1 292 1 HOH HOH . 
G 4 HOH A 2 293 2 HOH HOH . 
G 4 HOH A 3 294 4 HOH HOH . 
G 4 HOH A 4 295 5 HOH HOH . 
G 4 HOH A 5 296 6 HOH HOH . 
G 4 HOH A 6 297 7 HOH HOH . 
G 4 HOH A 7 298 8 HOH HOH . 
G 4 HOH A 8 299 9 HOH HOH . 
G 4 HOH A 9 300 10 HOH HOH . 
G 4 HOH A 10 301 11 HOH HOH . 
G 4 HOH A 11 302 12 HOH HOH . 
G 4 HOH A 12 303 13 HOH HOH . 
G 4 HOH A 13 304 14 HOH HOH . 
G 4 HOH A 14 305 15 HOH HOH . 
G 4 HOH A 15 306 16 HOH HOH . 
G 4 HOH A 16 307 17 HOH HOH . 
G 4 HOH A 17 308 18 HOH HOH . 
G 4 HOH A 18 309 19 HOH HOH . 
G 4 HOH A 19 310 20 HOH HOH . 
G 4 HOH A 20 311 21 HOH HOH . 
G 4 HOH A 21 312 22 HOH HOH . 
G 4 HOH A 22 313 23 HOH HOH . 
G 4 HOH A 23 314 24 HOH HOH . 
G 4 HOH A 24 315 25 HOH HOH . 
G 4 HOH A 25 316 26 HOH HOH . 
G 4 HOH A 26 317 27 HOH HOH . 
G 4 HOH A 27 318 56 HOH HOH . 
G 4 HOH A 28 319 57 HOH HOH . 
G 4 HOH A 29 320 58 HOH HOH . 
G 4 HOH A 30 321 59 HOH HOH . 
G 4 HOH A 31 322 60 HOH HOH . 
G 4 HOH A 32 323 61 HOH HOH . 
G 4 HOH A 33 324 62 HOH HOH . 
G 4 HOH A 34 325 63 HOH HOH . 
G 4 HOH A 35 326 64 HOH HOH . 
G 4 HOH A 36 327 77 HOH HOH . 
G 4 HOH A 37 328 81 HOH HOH . 
G 4 HOH A 38 329 82 HOH HOH . 
G 4 HOH A 39 330 83 HOH HOH . 
G 4 HOH A 40 331 84 HOH HOH . 
G 4 HOH A 41 332 85 HOH HOH . 
G 4 HOH A 42 333 86 HOH HOH . 
G 4 HOH A 43 334 87 HOH HOH . 
G 4 HOH A 44 335 99 HOH HOH . 
H 4 HOH B 1 292 3 HOH HOH . 
H 4 HOH B 2 293 28 HOH HOH . 
H 4 HOH B 3 294 29 HOH HOH . 
H 4 HOH B 4 295 30 HOH HOH . 
H 4 HOH B 5 296 31 HOH HOH . 
H 4 HOH B 6 297 32 HOH HOH . 
H 4 HOH B 7 298 33 HOH HOH . 
H 4 HOH B 8 299 34 HOH HOH . 
H 4 HOH B 9 300 35 HOH HOH . 
H 4 HOH B 10 301 36 HOH HOH . 
H 4 HOH B 11 302 37 HOH HOH . 
H 4 HOH B 12 303 38 HOH HOH . 
H 4 HOH B 13 304 39 HOH HOH . 
H 4 HOH B 14 305 40 HOH HOH . 
H 4 HOH B 15 306 41 HOH HOH . 
H 4 HOH B 16 307 42 HOH HOH . 
H 4 HOH B 17 308 43 HOH HOH . 
H 4 HOH B 18 309 44 HOH HOH . 
H 4 HOH B 19 310 45 HOH HOH . 
H 4 HOH B 20 311 46 HOH HOH . 
H 4 HOH B 21 312 47 HOH HOH . 
H 4 HOH B 22 313 48 HOH HOH . 
H 4 HOH B 23 314 49 HOH HOH . 
H 4 HOH B 24 315 50 HOH HOH . 
H 4 HOH B 25 316 51 HOH HOH . 
H 4 HOH B 26 317 52 HOH HOH . 
H 4 HOH B 27 318 53 HOH HOH . 
H 4 HOH B 28 319 54 HOH HOH . 
H 4 HOH B 29 320 55 HOH HOH . 
H 4 HOH B 30 321 65 HOH HOH . 
H 4 HOH B 31 322 66 HOH HOH . 
H 4 HOH B 32 323 67 HOH HOH . 
H 4 HOH B 33 324 68 HOH HOH . 
H 4 HOH B 34 325 69 HOH HOH . 
H 4 HOH B 35 326 70 HOH HOH . 
H 4 HOH B 36 327 71 HOH HOH . 
H 4 HOH B 37 328 72 HOH HOH . 
H 4 HOH B 38 329 73 HOH HOH . 
H 4 HOH B 39 330 74 HOH HOH . 
H 4 HOH B 40 331 75 HOH HOH . 
H 4 HOH B 41 332 76 HOH HOH . 
H 4 HOH B 42 333 78 HOH HOH . 
H 4 HOH B 43 334 79 HOH HOH . 
H 4 HOH B 44 335 80 HOH HOH . 
H 4 HOH B 45 336 88 HOH HOH . 
H 4 HOH B 46 337 89 HOH HOH . 
H 4 HOH B 47 338 90 HOH HOH . 
H 4 HOH B 48 339 91 HOH HOH . 
H 4 HOH B 49 340 92 HOH HOH . 
H 4 HOH B 50 341 93 HOH HOH . 
H 4 HOH B 51 342 94 HOH HOH . 
H 4 HOH B 52 343 95 HOH HOH . 
H 4 HOH B 53 344 96 HOH HOH . 
H 4 HOH B 54 345 97 HOH HOH . 
H 4 HOH B 55 346 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . C 2 26.818 52.704 18.229 1 45.45 ? N SAH 290 A 1 
HETATM 2 C CA SAH . . . C 2 28.061 52.101 17.72 1 43.97 ? CA SAH 290 A 1 
HETATM 3 C CB SAH . . . C 2 29.221 52.016 18.729 1 43.26 ? CB SAH 290 A 1 
HETATM 4 C CG SAH . . . C 2 28.996 51.044 19.89 1 44.27 ? CG SAH 290 A 1 
HETATM 5 S SD SAH . . . C 2 30.534 50.757 20.831 1 55.03 ? SD SAH 290 A 1 
HETATM 6 C C SAH . . . C 2 27.818 50.754 17.071 1 41.12 ? C SAH 290 A 1 
HETATM 7 O O SAH . . . C 2 28.746 50.078 16.902 1 38.4 ? O SAH 290 A 1 
HETATM 8 O OXT SAH . . . C 2 26.634 50.66 16.376 1 41.08 ? OXT SAH 290 A 1 
HETATM 9 C C5' SAH . . . C 2 30.054 51.423 22.425 1 58.46 ? C5' SAH 290 A 1 
HETATM 10 C C4' SAH . . . C 2 30.25 52.915 22.578 1 60.35 ? C4' SAH 290 A 1 
HETATM 11 O O4' SAH . . . C 2 29.842 53.24 23.865 1 64.4 ? O4' SAH 290 A 1 
HETATM 12 C C3' SAH . . . C 2 31.727 53.251 22.546 1 58.95 ? C3' SAH 290 A 1 
HETATM 13 O O3' SAH . . . C 2 31.904 54.151 21.484 1 58.1 ? O3' SAH 290 A 1 
HETATM 14 C C2' SAH . . . C 2 31.997 53.875 23.795 1 59.4 ? C2' SAH 290 A 1 
HETATM 15 O O2' SAH . . . C 2 32.883 55.005 23.772 1 52.4 ? O2' SAH 290 A 1 
HETATM 16 C C1' SAH . . . C 2 30.702 54.257 24.314 1 64.35 ? C1' SAH 290 A 1 
HETATM 17 N N9 SAH . . . C 2 30.709 54.48 25.782 1 65.36 ? N9 SAH 290 A 1 
HETATM 18 C C8 SAH . . . C 2 31.616 54.073 26.679 1 66.03 ? C8 SAH 290 A 1 
HETATM 19 N N7 SAH . . . C 2 31.247 54.515 27.929 1 64.78 ? N7 SAH 290 A 1 
HETATM 20 C C5 SAH . . . C 2 30.095 55.199 27.768 1 62.38 ? C5 SAH 290 A 1 
HETATM 21 C C6 SAH . . . C 2 29.322 55.835 28.662 1 61 ? C6 SAH 290 A 1 
HETATM 22 N N6 SAH . . . C 2 29.694 55.846 30.057 1 61.31 ? N6 SAH 290 A 1 
HETATM 23 N N1 SAH . . . C 2 28.214 56.453 28.264 1 62.05 ? N1 SAH 290 A 1 
HETATM 24 C C2 SAH . . . C 2 27.867 56.45 26.945 1 61.1 ? C2 SAH 290 A 1 
HETATM 25 N N3 SAH . . . C 2 28.659 55.808 26.049 1 60.21 ? N3 SAH 290 A 1 
HETATM 26 C C4 SAH . . . C 2 29.751 55.193 26.482 1 62.69 ? C4 SAH 290 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#