data_3HCE # _model_server_result.job_id HEVdJG9aX3w3wjnOYPS1VQ _model_server_result.datetime_utc '2024-11-04 23:08:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hce # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":290}' # _entry.id 3HCE # _exptl.entry_id 3HCE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HCE _cell.length_a 93.691 _cell.length_b 93.691 _cell.length_c 187.221 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HCE _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,B,C,D,E,F,G,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 299 n n N HN1 SAH sing 300 n n N HN2 SAH sing 301 n n CA CB SAH sing 302 n n CA C SAH sing 303 n n CA HA SAH sing 304 n n CB CG SAH sing 305 n n CB HB1 SAH sing 306 n n CB HB2 SAH sing 307 n n CG SD SAH sing 308 n n CG HG1 SAH sing 309 n n CG HG2 SAH sing 310 n n SD C5' SAH sing 311 n n C O SAH doub 312 n n C OXT SAH sing 313 n n OXT HXT SAH sing 314 n n C5' C4' SAH sing 315 n n C5' "H5'1" SAH sing 316 n n C5' "H5'2" SAH sing 317 n n C4' O4' SAH sing 318 n n C4' C3' SAH sing 319 n n C4' H4' SAH sing 320 n n O4' C1' SAH sing 321 n n C3' O3' SAH sing 322 n n C3' C2' SAH sing 323 n n C3' H3' SAH sing 324 n n O3' HO3' SAH sing 325 n n C2' O2' SAH sing 326 n n C2' C1' SAH sing 327 n n C2' H2' SAH sing 328 n n O2' HO2' SAH sing 329 n n C1' N9 SAH sing 330 n n C1' H1' SAH sing 331 n n N9 C8 SAH sing 332 n y N9 C4 SAH sing 333 n y C8 N7 SAH doub 334 n y C8 H8 SAH sing 335 n n N7 C5 SAH sing 336 n y C5 C6 SAH sing 337 n y C5 C4 SAH doub 338 n y C6 N6 SAH sing 339 n n C6 N1 SAH doub 340 n y N6 HN61 SAH sing 341 n n N6 HN62 SAH sing 342 n n N1 C2 SAH sing 343 n y C2 N3 SAH doub 344 n y C2 H2 SAH sing 345 n n N3 C4 SAH sing 346 n y # _atom_sites.entry_id 3HCE _atom_sites.fract_transf_matrix[1][1] 0.010673 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010673 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 290 1 SAH SAH . D 3 OTR A 1 291 1 OTR OTR . E 2 SAH B 1 290 2 SAH SAH . F 3 OTR B 1 291 2 OTR OTR . G 4 HOH A 1 292 1 HOH HOH . G 4 HOH A 2 293 2 HOH HOH . G 4 HOH A 3 294 4 HOH HOH . G 4 HOH A 4 295 5 HOH HOH . G 4 HOH A 5 296 6 HOH HOH . G 4 HOH A 6 297 7 HOH HOH . G 4 HOH A 7 298 8 HOH HOH . G 4 HOH A 8 299 9 HOH HOH . G 4 HOH A 9 300 10 HOH HOH . G 4 HOH A 10 301 11 HOH HOH . G 4 HOH A 11 302 12 HOH HOH . G 4 HOH A 12 303 13 HOH HOH . G 4 HOH A 13 304 14 HOH HOH . G 4 HOH A 14 305 15 HOH HOH . G 4 HOH A 15 306 16 HOH HOH . G 4 HOH A 16 307 17 HOH HOH . G 4 HOH A 17 308 18 HOH HOH . G 4 HOH A 18 309 19 HOH HOH . G 4 HOH A 19 310 20 HOH HOH . G 4 HOH A 20 311 21 HOH HOH . G 4 HOH A 21 312 22 HOH HOH . G 4 HOH A 22 313 23 HOH HOH . G 4 HOH A 23 314 24 HOH HOH . G 4 HOH A 24 315 25 HOH HOH . G 4 HOH A 25 316 26 HOH HOH . G 4 HOH A 26 317 27 HOH HOH . G 4 HOH A 27 318 56 HOH HOH . G 4 HOH A 28 319 57 HOH HOH . G 4 HOH A 29 320 58 HOH HOH . G 4 HOH A 30 321 59 HOH HOH . G 4 HOH A 31 322 60 HOH HOH . G 4 HOH A 32 323 61 HOH HOH . G 4 HOH A 33 324 62 HOH HOH . G 4 HOH A 34 325 63 HOH HOH . G 4 HOH A 35 326 64 HOH HOH . G 4 HOH A 36 327 77 HOH HOH . G 4 HOH A 37 328 81 HOH HOH . G 4 HOH A 38 329 82 HOH HOH . G 4 HOH A 39 330 83 HOH HOH . G 4 HOH A 40 331 84 HOH HOH . G 4 HOH A 41 332 85 HOH HOH . G 4 HOH A 42 333 86 HOH HOH . G 4 HOH A 43 334 87 HOH HOH . G 4 HOH A 44 335 99 HOH HOH . H 4 HOH B 1 292 3 HOH HOH . H 4 HOH B 2 293 28 HOH HOH . H 4 HOH B 3 294 29 HOH HOH . H 4 HOH B 4 295 30 HOH HOH . H 4 HOH B 5 296 31 HOH HOH . H 4 HOH B 6 297 32 HOH HOH . H 4 HOH B 7 298 33 HOH HOH . H 4 HOH B 8 299 34 HOH HOH . H 4 HOH B 9 300 35 HOH HOH . H 4 HOH B 10 301 36 HOH HOH . H 4 HOH B 11 302 37 HOH HOH . H 4 HOH B 12 303 38 HOH HOH . H 4 HOH B 13 304 39 HOH HOH . H 4 HOH B 14 305 40 HOH HOH . H 4 HOH B 15 306 41 HOH HOH . H 4 HOH B 16 307 42 HOH HOH . H 4 HOH B 17 308 43 HOH HOH . H 4 HOH B 18 309 44 HOH HOH . H 4 HOH B 19 310 45 HOH HOH . H 4 HOH B 20 311 46 HOH HOH . H 4 HOH B 21 312 47 HOH HOH . H 4 HOH B 22 313 48 HOH HOH . H 4 HOH B 23 314 49 HOH HOH . H 4 HOH B 24 315 50 HOH HOH . H 4 HOH B 25 316 51 HOH HOH . H 4 HOH B 26 317 52 HOH HOH . H 4 HOH B 27 318 53 HOH HOH . H 4 HOH B 28 319 54 HOH HOH . H 4 HOH B 29 320 55 HOH HOH . H 4 HOH B 30 321 65 HOH HOH . H 4 HOH B 31 322 66 HOH HOH . H 4 HOH B 32 323 67 HOH HOH . H 4 HOH B 33 324 68 HOH HOH . H 4 HOH B 34 325 69 HOH HOH . H 4 HOH B 35 326 70 HOH HOH . H 4 HOH B 36 327 71 HOH HOH . H 4 HOH B 37 328 72 HOH HOH . H 4 HOH B 38 329 73 HOH HOH . H 4 HOH B 39 330 74 HOH HOH . H 4 HOH B 40 331 75 HOH HOH . H 4 HOH B 41 332 76 HOH HOH . H 4 HOH B 42 333 78 HOH HOH . H 4 HOH B 43 334 79 HOH HOH . H 4 HOH B 44 335 80 HOH HOH . H 4 HOH B 45 336 88 HOH HOH . H 4 HOH B 46 337 89 HOH HOH . H 4 HOH B 47 338 90 HOH HOH . H 4 HOH B 48 339 91 HOH HOH . H 4 HOH B 49 340 92 HOH HOH . H 4 HOH B 50 341 93 HOH HOH . H 4 HOH B 51 342 94 HOH HOH . H 4 HOH B 52 343 95 HOH HOH . H 4 HOH B 53 344 96 HOH HOH . H 4 HOH B 54 345 97 HOH HOH . H 4 HOH B 55 346 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 2 27.59 51.195 -27.373 1 38.28 ? N SAH 290 B 1 HETATM 2 C CA SAH . . . E 2 28.376 52.15 -26.638 1 37.4 ? CA SAH 290 B 1 HETATM 3 C CB SAH . . . E 2 29.446 52.843 -27.486 1 35.95 ? CB SAH 290 B 1 HETATM 4 C CG SAH . . . E 2 28.866 53.633 -28.667 1 36.1 ? CG SAH 290 B 1 HETATM 5 S SD SAH . . . E 2 30.168 54.459 -29.656 1 46.81 ? SD SAH 290 B 1 HETATM 6 C C SAH . . . E 2 27.5 53.149 -25.912 1 33.42 ? C SAH 290 B 1 HETATM 7 O O SAH . . . E 2 26.493 52.708 -25.485 1 31.83 ? O SAH 290 B 1 HETATM 8 O OXT SAH . . . E 2 28.189 54.255 -25.421 1 29.39 ? OXT SAH 290 B 1 HETATM 9 C C5' SAH . . . E 2 29.871 53.745 -31.282 1 43.9 ? C5' SAH 290 B 1 HETATM 10 C C4' SAH . . . E 2 30.76 52.572 -31.623 1 47 ? C4' SAH 290 B 1 HETATM 11 O O4' SAH . . . E 2 30.603 52.175 -32.938 1 48.52 ? O4' SAH 290 B 1 HETATM 12 C C3' SAH . . . E 2 32.257 52.823 -31.53 1 46.88 ? C3' SAH 290 B 1 HETATM 13 O O3' SAH . . . E 2 32.753 52.229 -30.337 1 43.36 ? O3' SAH 290 B 1 HETATM 14 C C2' SAH . . . E 2 32.785 52.204 -32.701 1 45.19 ? C2' SAH 290 B 1 HETATM 15 O O2' SAH . . . E 2 33.971 51.427 -32.485 1 41.22 ? O2' SAH 290 B 1 HETATM 16 C C1' SAH . . . E 2 31.713 51.36 -33.174 1 48.42 ? C1' SAH 290 B 1 HETATM 17 N N9 SAH . . . E 2 31.814 51.2 -34.623 1 54.16 ? N9 SAH 290 B 1 HETATM 18 C C8 SAH . . . E 2 32.381 52.051 -35.487 1 57.08 ? C8 SAH 290 B 1 HETATM 19 N N7 SAH . . . E 2 32.241 51.573 -36.766 1 56.91 ? N7 SAH 290 B 1 HETATM 20 C C5 SAH . . . E 2 31.547 50.419 -36.66 1 56.96 ? C5 SAH 290 B 1 HETATM 21 C C6 SAH . . . E 2 31.135 49.548 -37.621 1 58.73 ? C6 SAH 290 B 1 HETATM 22 N N6 SAH . . . E 2 31.423 49.809 -39.036 1 57.28 ? N6 SAH 290 B 1 HETATM 23 N N1 SAH . . . E 2 30.454 48.45 -37.254 1 58.8 ? N1 SAH 290 B 1 HETATM 24 C C2 SAH . . . E 2 30.178 48.218 -35.943 1 53.87 ? C2 SAH 290 B 1 HETATM 25 N N3 SAH . . . E 2 30.594 49.109 -35.016 1 51.87 ? N3 SAH 290 B 1 HETATM 26 C C4 SAH . . . E 2 31.274 50.179 -35.377 1 54.32 ? C4 SAH 290 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #