data_3HCF # _model_server_result.job_id ZoclnyzUwPB4BDugTzIPjA _model_server_result.datetime_utc '2024-11-25 21:13:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hcf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3001}' # _entry.id 3HCF # _exptl.entry_id 3HCF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HCF _cell.length_a 93.514 _cell.length_b 93.514 _cell.length_c 187.535 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HCF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 A,B,C,D,E,F,G,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 310 n n N HN1 SAH sing 311 n n N HN2 SAH sing 312 n n CA CB SAH sing 313 n n CA C SAH sing 314 n n CA HA SAH sing 315 n n CB CG SAH sing 316 n n CB HB1 SAH sing 317 n n CB HB2 SAH sing 318 n n CG SD SAH sing 319 n n CG HG1 SAH sing 320 n n CG HG2 SAH sing 321 n n SD C5' SAH sing 322 n n C O SAH doub 323 n n C OXT SAH sing 324 n n OXT HXT SAH sing 325 n n C5' C4' SAH sing 326 n n C5' "H5'1" SAH sing 327 n n C5' "H5'2" SAH sing 328 n n C4' O4' SAH sing 329 n n C4' C3' SAH sing 330 n n C4' H4' SAH sing 331 n n O4' C1' SAH sing 332 n n C3' O3' SAH sing 333 n n C3' C2' SAH sing 334 n n C3' H3' SAH sing 335 n n O3' HO3' SAH sing 336 n n C2' O2' SAH sing 337 n n C2' C1' SAH sing 338 n n C2' H2' SAH sing 339 n n O2' HO2' SAH sing 340 n n C1' N9 SAH sing 341 n n C1' H1' SAH sing 342 n n N9 C8 SAH sing 343 n y N9 C4 SAH sing 344 n y C8 N7 SAH doub 345 n y C8 H8 SAH sing 346 n n N7 C5 SAH sing 347 n y C5 C6 SAH sing 348 n y C5 C4 SAH doub 349 n y C6 N6 SAH sing 350 n n C6 N1 SAH doub 351 n y N6 HN61 SAH sing 352 n n N6 HN62 SAH sing 353 n n N1 C2 SAH sing 354 n y C2 N3 SAH doub 355 n y C2 H2 SAH sing 356 n n N3 C4 SAH sing 357 n y # _atom_sites.entry_id 3HCF _atom_sites.fract_transf_matrix[1][1] 0.010694 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LT5 A 1 1001 1001 LT5 LT5 . D 3 SAH A 1 3001 3001 SAH SAH . E 4 EDO A 1 290 1 EDO EDO . F 2 LT5 B 1 1002 1002 LT5 LT5 . G 3 SAH B 1 3002 3002 SAH SAH . H 5 HOH A 1 291 2 HOH HOH . H 5 HOH A 2 292 3 HOH HOH . H 5 HOH A 3 293 4 HOH HOH . H 5 HOH A 4 294 5 HOH HOH . H 5 HOH A 5 295 6 HOH HOH . H 5 HOH A 6 296 7 HOH HOH . H 5 HOH A 7 297 8 HOH HOH . H 5 HOH A 8 298 9 HOH HOH . H 5 HOH A 9 299 10 HOH HOH . H 5 HOH A 10 300 11 HOH HOH . H 5 HOH A 11 301 12 HOH HOH . H 5 HOH A 12 302 13 HOH HOH . H 5 HOH A 13 303 14 HOH HOH . H 5 HOH A 14 304 15 HOH HOH . H 5 HOH A 15 305 16 HOH HOH . H 5 HOH A 16 306 17 HOH HOH . H 5 HOH A 17 307 37 HOH HOH . H 5 HOH A 18 308 38 HOH HOH . H 5 HOH A 19 309 41 HOH HOH . H 5 HOH A 20 310 42 HOH HOH . H 5 HOH A 21 311 48 HOH HOH . H 5 HOH A 22 312 49 HOH HOH . H 5 HOH A 23 313 50 HOH HOH . H 5 HOH A 24 314 56 HOH HOH . H 5 HOH A 25 315 58 HOH HOH . H 5 HOH A 26 316 59 HOH HOH . H 5 HOH A 27 317 60 HOH HOH . H 5 HOH A 28 318 61 HOH HOH . H 5 HOH A 29 319 62 HOH HOH . H 5 HOH A 30 320 64 HOH HOH . H 5 HOH A 31 321 65 HOH HOH . H 5 HOH A 32 322 66 HOH HOH . H 5 HOH A 33 323 67 HOH HOH . H 5 HOH A 34 324 73 HOH HOH . H 5 HOH A 35 325 74 HOH HOH . H 5 HOH A 36 326 75 HOH HOH . H 5 HOH A 37 327 76 HOH HOH . H 5 HOH A 38 328 80 HOH HOH . I 5 HOH B 1 290 1 HOH HOH . I 5 HOH B 2 291 18 HOH HOH . I 5 HOH B 3 292 19 HOH HOH . I 5 HOH B 4 293 20 HOH HOH . I 5 HOH B 5 294 21 HOH HOH . I 5 HOH B 6 295 22 HOH HOH . I 5 HOH B 7 296 23 HOH HOH . I 5 HOH B 8 297 24 HOH HOH . I 5 HOH B 9 298 25 HOH HOH . I 5 HOH B 10 299 26 HOH HOH . I 5 HOH B 11 300 27 HOH HOH . I 5 HOH B 12 301 28 HOH HOH . I 5 HOH B 13 302 29 HOH HOH . I 5 HOH B 14 303 30 HOH HOH . I 5 HOH B 15 304 31 HOH HOH . I 5 HOH B 16 305 32 HOH HOH . I 5 HOH B 17 306 33 HOH HOH . I 5 HOH B 18 307 34 HOH HOH . I 5 HOH B 19 308 35 HOH HOH . I 5 HOH B 20 309 36 HOH HOH . I 5 HOH B 21 310 39 HOH HOH . I 5 HOH B 22 311 40 HOH HOH . I 5 HOH B 23 312 43 HOH HOH . I 5 HOH B 24 313 44 HOH HOH . I 5 HOH B 25 314 45 HOH HOH . I 5 HOH B 26 315 46 HOH HOH . I 5 HOH B 27 316 47 HOH HOH . I 5 HOH B 28 317 51 HOH HOH . I 5 HOH B 29 318 52 HOH HOH . I 5 HOH B 30 319 53 HOH HOH . I 5 HOH B 31 320 54 HOH HOH . I 5 HOH B 32 321 55 HOH HOH . I 5 HOH B 33 322 57 HOH HOH . I 5 HOH B 34 323 63 HOH HOH . I 5 HOH B 35 324 68 HOH HOH . I 5 HOH B 36 325 69 HOH HOH . I 5 HOH B 37 326 70 HOH HOH . I 5 HOH B 38 327 71 HOH HOH . I 5 HOH B 39 328 72 HOH HOH . I 5 HOH B 40 329 77 HOH HOH . I 5 HOH B 41 330 78 HOH HOH . I 5 HOH B 42 331 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . D 3 26.517 52.795 18.112 1 45.79 ? N SAH 3001 A 1 HETATM 2 C CA SAH . . . D 3 27.712 52.201 17.516 1 49.24 ? CA SAH 3001 A 1 HETATM 3 C CB SAH . . . D 3 28.915 52.044 18.453 1 49.59 ? CB SAH 3001 A 1 HETATM 4 C CG SAH . . . D 3 28.596 51.32 19.777 1 49.74 ? CG SAH 3001 A 1 HETATM 5 S SD SAH . . . D 3 30.078 50.907 20.771 1 64 ? SD SAH 3001 A 1 HETATM 6 C C SAH . . . D 3 27.408 50.871 16.869 1 52.31 ? C SAH 3001 A 1 HETATM 7 O O SAH . . . D 3 28.371 50.24 16.612 1 51.56 ? O SAH 3001 A 1 HETATM 8 O OXT SAH . . . D 3 26.105 50.629 16.459 1 56.05 ? OXT SAH 3001 A 1 HETATM 9 C C5' SAH . . . D 3 29.671 51.578 22.41 1 74.19 ? C5' SAH 3001 A 1 HETATM 10 C C4' SAH . . . D 3 29.923 53.071 22.589 1 74.95 ? C4' SAH 3001 A 1 HETATM 11 O O4' SAH . . . D 3 29.53 53.463 23.854 1 72.84 ? O4' SAH 3001 A 1 HETATM 12 C C3' SAH . . . D 3 31.385 53.434 22.476 1 76.36 ? C3' SAH 3001 A 1 HETATM 13 O O3' SAH . . . D 3 31.563 54.322 21.427 1 74.84 ? O3' SAH 3001 A 1 HETATM 14 C C2' SAH . . . D 3 31.677 54.035 23.67 1 76.61 ? C2' SAH 3001 A 1 HETATM 15 O O2' SAH . . . D 3 32.603 55.064 23.561 1 75.96 ? O2' SAH 3001 A 1 HETATM 16 C C1' SAH . . . D 3 30.427 54.44 24.206 1 75.45 ? C1' SAH 3001 A 1 HETATM 17 N N9 SAH . . . D 3 30.409 54.654 25.646 1 78.67 ? N9 SAH 3001 A 1 HETATM 18 C C8 SAH . . . D 3 31.284 54.191 26.557 1 78.71 ? C8 SAH 3001 A 1 HETATM 19 N N7 SAH . . . D 3 30.869 54.604 27.813 1 78.18 ? N7 SAH 3001 A 1 HETATM 20 C C5 SAH . . . D 3 29.716 55.325 27.66 1 78.62 ? C5 SAH 3001 A 1 HETATM 21 C C6 SAH . . . D 3 28.891 55.948 28.565 1 80.01 ? C6 SAH 3001 A 1 HETATM 22 N N6 SAH . . . D 3 29.209 55.867 29.977 1 81.02 ? N6 SAH 3001 A 1 HETATM 23 N N1 SAH . . . D 3 27.811 56.6 28.122 1 80.13 ? N1 SAH 3001 A 1 HETATM 24 C C2 SAH . . . D 3 27.53 56.642 26.796 1 78.72 ? C2 SAH 3001 A 1 HETATM 25 N N3 SAH . . . D 3 28.344 56.029 25.896 1 77.18 ? N3 SAH 3001 A 1 HETATM 26 C C4 SAH . . . D 3 29.426 55.368 26.339 1 78.2 ? C4 SAH 3001 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 26 #