data_3HCM # _model_server_result.job_id VykkBxwBakp9QkIJ1Zdr-w _model_server_result.datetime_utc '2024-11-16 07:43:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hcm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":94}' # _entry.id 3HCM # _exptl.entry_id 3HCM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 263.723 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R)-3-[3-(4-chlorophenyl)-1,2,4-oxadiazol-5-yl]piperidine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.41 _cell.angle_gamma 90 _cell.entry_id 3HCM _cell.length_a 35.257 _cell.length_b 57.797 _cell.length_c 47.745 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HCM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 19 A SER 18 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc2 A O GLU 22 A GLU 21 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc3 A O ASP 24 A ASP 23 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc4 A O LYS 27 A LYS 26 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc7 A OD1 ASP 62 A ASP 61 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc8 A OD1 ASP 64 A ASP 63 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc9 A OD1 ASP 66 A ASP 65 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc10 A O GLU 68 A GLU 67 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc11 A OE1 GLU 73 A GLU 72 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc12 A OE2 GLU 73 A GLU 72 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc13 D CA CA . A CA 93 1_555 J O HOH . A HOH 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc14 B O SER 19 B SER 18 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc15 B O GLU 22 B GLU 21 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc16 B O ASP 24 B ASP 23 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc17 B O LYS 27 B LYS 26 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc18 B OE1 GLU 32 B GLU 31 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc19 B OE2 GLU 32 B GLU 31 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc20 B OD1 ASP 62 B ASP 61 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc21 B OD1 ASP 64 B ASP 63 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc22 B OD1 ASP 66 B ASP 65 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc23 B O GLU 68 B GLU 67 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc24 B OE1 GLU 73 B GLU 72 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc25 B OE2 GLU 73 B GLU 72 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc26 G CA CA . B CA 92 1_555 K O HOH . B HOH 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc27 H CA CA . B CA 93 1_555 K O HOH . B HOH 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? # _chem_comp.formula 'C13 H14 Cl N3 O' _chem_comp.formula_weight 263.723 _chem_comp.id S45 _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-3-[3-(4-chlorophenyl)-1,2,4-oxadiazol-5-yl]piperidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C7 S45 sing 266 n n C7 C10 S45 doub 267 n y C7 C9 S45 sing 268 n y C10 C6 S45 sing 269 n y C6 C4 S45 doub 270 n y C4 C5 S45 sing 271 n y C4 C1 S45 sing 272 n y C5 C9 S45 doub 273 n y C1 N1 S45 sing 274 n y C1 N2 S45 doub 275 n y N1 C2 S45 doub 276 n y C2 O1 S45 sing 277 n y C2 C3 S45 sing 278 n n O1 N2 S45 sing 279 n y C3 C11 S45 sing 280 n n C3 C8 S45 sing 281 n n C11 C13 S45 sing 282 n n C13 C12 S45 sing 283 n n C12 N3 S45 sing 284 n n N3 C8 S45 sing 285 n n C10 H10 S45 sing 286 n n C6 H6 S45 sing 287 n n C5 H5 S45 sing 288 n n C9 H9 S45 sing 289 n n C3 H3 S45 sing 290 n n C11 H11 S45 sing 291 n n C11 H11A S45 sing 292 n n C13 H13 S45 sing 293 n n C13 H13A S45 sing 294 n n C12 H12 S45 sing 295 n n C12 H12A S45 sing 296 n n N3 HN3 S45 sing 297 n n C8 H8 S45 sing 298 n n C8 H8A S45 sing 299 n n # _atom_sites.entry_id 3HCM _atom_sites.fract_transf_matrix[1][1] 0.028364 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011123 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 92 90 CA CA . D 2 CA A 1 93 91 CA CA . E 3 S45 A 1 94 1 S45 S45 . F 4 ACT A 1 95 1 ACT ACT . G 2 CA B 1 92 91 CA CA . H 2 CA B 1 93 92 CA CA . I 3 S45 B 1 94 1 S45 S45 . J 5 HOH A 1 96 96 HOH HOH . J 5 HOH A 2 97 1 HOH HOH . J 5 HOH A 3 98 5 HOH HOH . J 5 HOH A 4 99 7 HOH HOH . J 5 HOH A 5 100 10 HOH HOH . J 5 HOH A 6 101 11 HOH HOH . J 5 HOH A 7 102 18 HOH HOH . J 5 HOH A 8 103 21 HOH HOH . J 5 HOH A 9 104 22 HOH HOH . J 5 HOH A 10 105 23 HOH HOH . J 5 HOH A 11 106 26 HOH HOH . J 5 HOH A 12 107 30 HOH HOH . J 5 HOH A 13 108 31 HOH HOH . J 5 HOH A 14 109 32 HOH HOH . J 5 HOH A 15 110 33 HOH HOH . J 5 HOH A 16 111 35 HOH HOH . J 5 HOH A 17 112 36 HOH HOH . J 5 HOH A 18 113 37 HOH HOH . J 5 HOH A 19 114 38 HOH HOH . J 5 HOH A 20 115 39 HOH HOH . J 5 HOH A 21 116 40 HOH HOH . J 5 HOH A 22 117 41 HOH HOH . J 5 HOH A 23 118 42 HOH HOH . J 5 HOH A 24 119 44 HOH HOH . J 5 HOH A 25 120 45 HOH HOH . J 5 HOH A 26 121 46 HOH HOH . J 5 HOH A 27 122 47 HOH HOH . J 5 HOH A 28 123 48 HOH HOH . J 5 HOH A 29 124 49 HOH HOH . J 5 HOH A 30 125 50 HOH HOH . J 5 HOH A 31 126 52 HOH HOH . J 5 HOH A 32 127 53 HOH HOH . J 5 HOH A 33 128 54 HOH HOH . J 5 HOH A 34 129 56 HOH HOH . J 5 HOH A 35 130 57 HOH HOH . J 5 HOH A 36 131 60 HOH HOH . J 5 HOH A 37 132 61 HOH HOH . J 5 HOH A 38 133 63 HOH HOH . J 5 HOH A 39 134 64 HOH HOH . J 5 HOH A 40 135 65 HOH HOH . J 5 HOH A 41 136 66 HOH HOH . J 5 HOH A 42 137 68 HOH HOH . J 5 HOH A 43 138 69 HOH HOH . J 5 HOH A 44 139 71 HOH HOH . J 5 HOH A 45 140 72 HOH HOH . J 5 HOH A 46 141 82 HOH HOH . J 5 HOH A 47 142 85 HOH HOH . J 5 HOH A 48 143 87 HOH HOH . J 5 HOH A 49 144 89 HOH HOH . J 5 HOH A 50 145 90 HOH HOH . J 5 HOH A 51 146 91 HOH HOH . J 5 HOH A 52 147 92 HOH HOH . J 5 HOH A 53 148 93 HOH HOH . K 5 HOH B 1 95 95 HOH HOH . K 5 HOH B 2 96 2 HOH HOH . K 5 HOH B 3 97 3 HOH HOH . K 5 HOH B 4 98 4 HOH HOH . K 5 HOH B 5 99 6 HOH HOH . K 5 HOH B 6 100 8 HOH HOH . K 5 HOH B 7 101 9 HOH HOH . K 5 HOH B 8 102 12 HOH HOH . K 5 HOH B 9 103 13 HOH HOH . K 5 HOH B 10 104 14 HOH HOH . K 5 HOH B 11 105 15 HOH HOH . K 5 HOH B 12 106 16 HOH HOH . K 5 HOH B 13 107 17 HOH HOH . K 5 HOH B 14 108 19 HOH HOH . K 5 HOH B 15 109 20 HOH HOH . K 5 HOH B 16 110 24 HOH HOH . K 5 HOH B 17 111 25 HOH HOH . K 5 HOH B 18 112 27 HOH HOH . K 5 HOH B 19 113 28 HOH HOH . K 5 HOH B 20 114 29 HOH HOH . K 5 HOH B 21 115 34 HOH HOH . K 5 HOH B 22 116 43 HOH HOH . K 5 HOH B 23 117 51 HOH HOH . K 5 HOH B 24 118 55 HOH HOH . K 5 HOH B 25 119 58 HOH HOH . K 5 HOH B 26 120 59 HOH HOH . K 5 HOH B 27 121 62 HOH HOH . K 5 HOH B 28 122 67 HOH HOH . K 5 HOH B 29 123 70 HOH HOH . K 5 HOH B 30 124 73 HOH HOH . K 5 HOH B 31 125 74 HOH HOH . K 5 HOH B 32 126 75 HOH HOH . K 5 HOH B 33 127 76 HOH HOH . K 5 HOH B 34 128 77 HOH HOH . K 5 HOH B 35 129 78 HOH HOH . K 5 HOH B 36 130 79 HOH HOH . K 5 HOH B 37 131 80 HOH HOH . K 5 HOH B 38 132 81 HOH HOH . K 5 HOH B 39 133 83 HOH HOH . K 5 HOH B 40 134 84 HOH HOH . K 5 HOH B 41 135 86 HOH HOH . K 5 HOH B 42 136 88 HOH HOH . K 5 HOH B 43 137 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL1 S45 . . . I 3 -5.913 -4.411 13.898 1 47.48 ? CL1 S45 94 B 1 HETATM 2 C C7 S45 . . . I 3 -5.193 -5.39 12.581 1 48.56 ? C7 S45 94 B 1 HETATM 3 C C10 S45 . . . I 3 -5.216 -6.797 12.578 1 49.67 ? C10 S45 94 B 1 HETATM 4 C C6 S45 . . . I 3 -4.638 -7.525 11.519 1 47.75 ? C6 S45 94 B 1 HETATM 5 C C4 S45 . . . I 3 -4.052 -6.839 10.456 1 50.11 ? C4 S45 94 B 1 HETATM 6 C C5 S45 . . . I 3 -4.039 -5.447 10.468 1 48.5 ? C5 S45 94 B 1 HETATM 7 C C9 S45 . . . I 3 -4.6 -4.717 11.513 1 48.86 ? C9 S45 94 B 1 HETATM 8 C C1 S45 . . . I 3 -3.401 -7.531 9.295 1 50.88 ? C1 S45 94 B 1 HETATM 9 N N1 S45 . . . I 3 -2.787 -8.764 9.305 1 54.47 ? N1 S45 94 B 1 HETATM 10 C C2 S45 . . . I 3 -2.3 -9.031 8.063 1 53.99 ? C2 S45 94 B 1 HETATM 11 O O1 S45 . . . I 3 -2.581 -7.969 7.269 1 54.06 ? O1 S45 94 B 1 HETATM 12 N N2 S45 . . . I 3 -3.285 -6.99 8.051 1 53.13 ? N2 S45 94 B 1 HETATM 13 C C3 S45 . . . I 3 -1.568 -10.144 7.419 1 54.45 ? C3 S45 94 B 1 HETATM 14 C C11 S45 . . . I 3 -0.103 -9.691 7.288 1 54.51 ? C11 S45 94 B 1 HETATM 15 C C13 S45 . . . I 3 0.616 -9.894 5.95 1 54.17 ? C13 S45 94 B 1 HETATM 16 C C12 S45 . . . I 3 -0.289 -9.771 4.73 1 54.96 ? C12 S45 94 B 1 HETATM 17 N N3 S45 . . . I 3 -1.437 -10.645 4.923 1 56.47 ? N3 S45 94 B 1 HETATM 18 C C8 S45 . . . I 3 -2.288 -10.512 6.102 1 55.76 ? C8 S45 94 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #