data_3HD6 # _model_server_result.job_id Wt64YsB-stx3Y5bBm1SLeQ _model_server_result.datetime_utc '2024-11-21 13:49:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hd6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3HD6 # _exptl.entry_id 3HD6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3HD6 _cell.length_a 99.83 _cell.length_b 99.83 _cell.length_c 101.076 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HD6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 49.915 86.455316 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -49.915 86.455316 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3HD6 _atom_sites.fract_transf_matrix[1][1] 0.010017 _atom_sites.fract_transf_matrix[1][2] 0.005783 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 501 501 BOG BOG . C 3 HOH A 1 486 1 HOH HOH . C 3 HOH A 2 487 2 HOH HOH . C 3 HOH A 3 488 3 HOH HOH . C 3 HOH A 4 489 4 HOH HOH . C 3 HOH A 5 490 5 HOH HOH . C 3 HOH A 6 491 6 HOH HOH . C 3 HOH A 7 492 7 HOH HOH . C 3 HOH A 8 493 8 HOH HOH . C 3 HOH A 9 494 9 HOH HOH . C 3 HOH A 10 495 10 HOH HOH . C 3 HOH A 11 496 11 HOH HOH . C 3 HOH A 12 497 12 HOH HOH . C 3 HOH A 13 498 13 HOH HOH . C 3 HOH A 14 499 14 HOH HOH . C 3 HOH A 15 500 15 HOH HOH . C 3 HOH A 16 502 16 HOH HOH . C 3 HOH A 17 503 17 HOH HOH . C 3 HOH A 18 504 18 HOH HOH . C 3 HOH A 19 505 19 HOH HOH . C 3 HOH A 20 506 20 HOH HOH . C 3 HOH A 21 507 21 HOH HOH . C 3 HOH A 22 508 22 HOH HOH . C 3 HOH A 23 509 23 HOH HOH . C 3 HOH A 24 510 24 HOH HOH . C 3 HOH A 25 511 25 HOH HOH . C 3 HOH A 26 512 26 HOH HOH . C 3 HOH A 27 513 27 HOH HOH . C 3 HOH A 28 514 28 HOH HOH . C 3 HOH A 29 515 29 HOH HOH . C 3 HOH A 30 516 30 HOH HOH . C 3 HOH A 31 517 31 HOH HOH . C 3 HOH A 32 518 32 HOH HOH . C 3 HOH A 33 519 33 HOH HOH . C 3 HOH A 34 520 34 HOH HOH . C 3 HOH A 35 521 35 HOH HOH . C 3 HOH A 36 522 36 HOH HOH . C 3 HOH A 37 523 37 HOH HOH . C 3 HOH A 38 524 38 HOH HOH . C 3 HOH A 39 525 39 HOH HOH . C 3 HOH A 40 526 40 HOH HOH . C 3 HOH A 41 527 41 HOH HOH . C 3 HOH A 42 528 42 HOH HOH . C 3 HOH A 43 529 43 HOH HOH . C 3 HOH A 44 530 44 HOH HOH . C 3 HOH A 45 531 45 HOH HOH . C 3 HOH A 46 532 46 HOH HOH . C 3 HOH A 47 533 47 HOH HOH . C 3 HOH A 48 534 48 HOH HOH . C 3 HOH A 49 535 49 HOH HOH . C 3 HOH A 50 536 50 HOH HOH . C 3 HOH A 51 537 51 HOH HOH . C 3 HOH A 52 538 52 HOH HOH . C 3 HOH A 53 539 53 HOH HOH . C 3 HOH A 54 540 54 HOH HOH . C 3 HOH A 55 541 55 HOH HOH . C 3 HOH A 56 542 56 HOH HOH . C 3 HOH A 57 543 57 HOH HOH . C 3 HOH A 58 544 58 HOH HOH . C 3 HOH A 59 545 59 HOH HOH . C 3 HOH A 60 546 60 HOH HOH . C 3 HOH A 61 547 61 HOH HOH . C 3 HOH A 62 548 62 HOH HOH . C 3 HOH A 63 549 63 HOH HOH . C 3 HOH A 64 550 64 HOH HOH . C 3 HOH A 65 551 65 HOH HOH . C 3 HOH A 66 552 66 HOH HOH . C 3 HOH A 67 553 67 HOH HOH . C 3 HOH A 68 554 68 HOH HOH . C 3 HOH A 69 555 69 HOH HOH . C 3 HOH A 70 556 70 HOH HOH . C 3 HOH A 71 557 71 HOH HOH . C 3 HOH A 72 558 72 HOH HOH . C 3 HOH A 73 559 73 HOH HOH . C 3 HOH A 74 560 74 HOH HOH . C 3 HOH A 75 561 75 HOH HOH . C 3 HOH A 76 562 76 HOH HOH . C 3 HOH A 77 563 77 HOH HOH . C 3 HOH A 78 564 78 HOH HOH . C 3 HOH A 79 565 79 HOH HOH . C 3 HOH A 80 566 80 HOH HOH . C 3 HOH A 81 567 81 HOH HOH . C 3 HOH A 82 568 82 HOH HOH . C 3 HOH A 83 569 83 HOH HOH . C 3 HOH A 84 570 84 HOH HOH . C 3 HOH A 85 571 85 HOH HOH . C 3 HOH A 86 572 86 HOH HOH . C 3 HOH A 87 573 87 HOH HOH . C 3 HOH A 88 574 88 HOH HOH . C 3 HOH A 89 575 89 HOH HOH . C 3 HOH A 90 576 90 HOH HOH . C 3 HOH A 91 577 91 HOH HOH . C 3 HOH A 92 578 92 HOH HOH . C 3 HOH A 93 579 93 HOH HOH . C 3 HOH A 94 580 94 HOH HOH . C 3 HOH A 95 581 95 HOH HOH . C 3 HOH A 96 582 96 HOH HOH . C 3 HOH A 97 583 97 HOH HOH . C 3 HOH A 98 584 98 HOH HOH . C 3 HOH A 99 585 99 HOH HOH . C 3 HOH A 100 586 100 HOH HOH . C 3 HOH A 101 587 101 HOH HOH . C 3 HOH A 102 588 102 HOH HOH . C 3 HOH A 103 589 103 HOH HOH . C 3 HOH A 104 590 104 HOH HOH . C 3 HOH A 105 591 105 HOH HOH . C 3 HOH A 106 592 106 HOH HOH . C 3 HOH A 107 593 107 HOH HOH . C 3 HOH A 108 594 108 HOH HOH . C 3 HOH A 109 595 109 HOH HOH . C 3 HOH A 110 596 110 HOH HOH . C 3 HOH A 111 597 111 HOH HOH . C 3 HOH A 112 598 112 HOH HOH . C 3 HOH A 113 599 113 HOH HOH . C 3 HOH A 114 600 114 HOH HOH . C 3 HOH A 115 601 115 HOH HOH . C 3 HOH A 116 602 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . B 2 17.264 82.665 55.52 1 97.18 ? C1 BOG 501 A 1 HETATM 2 O O1 BOG . . . B 2 17.115 82.31 54.143 1 96.53 ? O1 BOG 501 A 1 HETATM 3 C C2 BOG . . . B 2 16.809 84.1 55.741 1 97.37 ? C2 BOG 501 A 1 HETATM 4 O O2 BOG . . . B 2 17.581 84.983 54.922 1 97.71 ? O2 BOG 501 A 1 HETATM 5 C C3 BOG . . . B 2 16.943 84.482 57.215 1 97.61 ? C3 BOG 501 A 1 HETATM 6 O O3 BOG . . . B 2 16.353 85.763 57.464 1 97.67 ? O3 BOG 501 A 1 HETATM 7 C C4 BOG . . . B 2 16.258 83.453 58.104 1 97.61 ? C4 BOG 501 A 1 HETATM 8 O O4 BOG . . . B 2 16.593 83.723 59.469 1 97.91 ? O4 BOG 501 A 1 HETATM 9 C C5 BOG . . . B 2 16.687 82.037 57.727 1 97.49 ? C5 BOG 501 A 1 HETATM 10 O O5 BOG . . . B 2 16.453 81.817 56.334 1 97.5 ? O5 BOG 501 A 1 HETATM 11 C C6 BOG . . . B 2 15.936 80.987 58.534 1 97.15 ? C6 BOG 501 A 1 HETATM 12 O O6 BOG . . . B 2 16.854 80.272 59.372 1 96.61 ? O6 BOG 501 A 1 HETATM 13 C C1' BOG . . . B 2 18.309 82.387 53.359 1 95.89 ? C1' BOG 501 A 1 HETATM 14 C C2' BOG . . . B 2 18.06 83.287 52.156 1 95.45 ? C2' BOG 501 A 1 HETATM 15 C C3' BOG . . . B 2 18.044 82.492 50.859 1 95.08 ? C3' BOG 501 A 1 HETATM 16 C C4' BOG . . . B 2 19.457 82.202 50.362 1 94.82 ? C4' BOG 501 A 1 HETATM 17 C C5' BOG . . . B 2 19.851 83.126 49.212 1 94.6 ? C5' BOG 501 A 1 HETATM 18 C C6' BOG . . . B 2 19.449 82.537 47.863 1 94.33 ? C6' BOG 501 A 1 HETATM 19 C C7' BOG . . . B 2 20.517 81.587 47.331 1 94.04 ? C7' BOG 501 A 1 HETATM 20 C C8' BOG . . . B 2 19.921 80.559 46.396 1 93.69 ? C8' BOG 501 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #