data_3HD7 # _model_server_result.job_id 6_tnVIMutWW3mH_vUWX4pw _model_server_result.datetime_utc '2024-11-29 01:23:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hd7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":117}' # _entry.id 3HD7 # _exptl.entry_id 3HD7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'Synthetic peptide' _entity.formula_weight 189.169 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description glycylglycylglycine _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.34 _cell.angle_gamma 90 _cell.entry_id 3HD7 _cell.length_a 265.412 _cell.length_b 135.49 _cell.length_c 58.689 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HD7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L 1 1 E,F,G,H,M,N,O,P,Q,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 M N N # _chem_comp.formula 'C6 H11 N3 O4' _chem_comp.formula_weight 189.169 _chem_comp.id GGG _chem_comp.mon_nstd_flag . _chem_comp.name glycylglycylglycine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GGG sing 83 n n CA1 C1 GGG sing 84 n n C1 O1 GGG doub 85 n n C1 N2 GGG sing 86 n n N2 CA2 GGG sing 87 n n CA2 C2 GGG sing 88 n n C2 O2 GGG doub 89 n n C2 N3 GGG sing 90 n n N3 CA3 GGG sing 91 n n CA3 C3 GGG sing 92 n n C3 O3 GGG doub 93 n n C3 O GGG sing 94 n n N1 HN1 GGG sing 95 n n N1 HN1A GGG sing 96 n n CA1 HA1 GGG sing 97 n n CA1 HA1A GGG sing 98 n n N2 HN2 GGG sing 99 n n CA2 HA2 GGG sing 100 n n CA2 HA2A GGG sing 101 n n N3 HN3 GGG sing 102 n n CA3 HA3 GGG sing 103 n n CA3 HA3A GGG sing 104 n n HO O GGG sing 105 n n # _atom_sites.entry_id 3HD7 _atom_sites.fract_transf_matrix[1][1] 0.003768 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000419 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 GGG A 1 1 1 GGG GLY . J 5 GGG A 1 117 1 GGG GLY . K 6 SO4 C 1 84 5 SO4 SO4 . L 6 SO4 D 1 4 4 SO4 SO4 . M 5 GGG E 1 1 1 GGG GLY . N 6 SO4 E 1 117 1 SO4 SO4 . O 6 SO4 E 1 7 7 SO4 SO4 . P 6 SO4 F 1 2 2 SO4 SO4 . Q 6 SO4 F 1 3 3 SO4 SO4 . R 6 SO4 F 1 9 9 SO4 SO4 . S 6 SO4 H 1 10 10 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GGG . . . J 5 138.558 12.133 75.512 1 159.63 ? N1 GGG 117 A 1 HETATM 2 C CA1 GGG . . . J 5 138.287 10.842 76.122 1 161.22 ? CA1 GGG 117 A 1 HETATM 3 C C1 GGG . . . J 5 136.858 10.364 75.928 1 144.64 ? C1 GGG 117 A 1 HETATM 4 O O1 GGG . . . J 5 136.613 9.326 75.308 1 119.45 ? O1 GGG 117 A 1 HETATM 5 N N2 GGG . . . J 5 135.907 11.12 76.463 1 142.07 ? N2 GGG 117 A 1 HETATM 6 C CA2 GGG . . . J 5 136.217 12.335 77.189 1 147.07 ? CA2 GGG 117 A 1 HETATM 7 C C2 GGG . . . J 5 135.94 12.187 78.668 1 148 ? C2 GGG 117 A 1 HETATM 8 O O2 GGG . . . J 5 134.956 11.544 79.059 1 122.03 ? O2 GGG 117 A 1 HETATM 9 N N3 GGG . . . J 5 136.812 12.776 79.486 1 165.25 ? N3 GGG 117 A 1 HETATM 10 C CA3 GGG . . . J 5 136.681 12.714 80.932 1 166.01 ? CA3 GGG 117 A 1 HETATM 11 C C3 GGG . . . J 5 137.822 11.986 81.626 1 143.29 ? C3 GGG 117 A 1 HETATM 12 O O3 GGG . . . J 5 138.875 11.714 81.039 1 127.35 ? O3 GGG 117 A 1 HETATM 13 O O GGG . . . J 5 137.72 11.645 82.805 1 132.92 ? O GGG 117 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #