data_3HDH
#
_model_server_result.job_id            jzoUIB4-mPb-uWvMwtYS_A 
_model_server_result.datetime_utc      '2024-11-29 14:55:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hdh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1150}' 
#
_entry.id    3HDH 
#
_exptl.entry_id    3HDH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HDH 
_cell.length_a            227.2 
_cell.length_b            82.1 
_cell.length_c            124.7 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HDH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,G,H 1 1 
C,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 62.35 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3HDH 
_atom_sites.fract_transf_matrix[1][1]    0.004401 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01218 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008019 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NAD A 1 350 350 NAD NAD . 
E 2 NAD B 1 750 750 NAD NAD . 
F 2 NAD C 1 1150 1150 NAD NAD . 
G 3 HOH A 1 1201 1201 HOH HOH . 
G 3 HOH A 2 1202 1202 HOH HOH . 
G 3 HOH A 3 1203 1203 HOH HOH . 
G 3 HOH A 4 1206 1206 HOH HOH . 
G 3 HOH A 5 1213 1213 HOH HOH . 
G 3 HOH A 6 1216 1216 HOH HOH . 
G 3 HOH A 7 1221 1221 HOH HOH . 
H 3 HOH B 1 1204 1204 HOH HOH . 
H 3 HOH B 2 1205 1205 HOH HOH . 
H 3 HOH B 3 1207 1207 HOH HOH . 
H 3 HOH B 4 1208 1208 HOH HOH . 
H 3 HOH B 5 1209 1209 HOH HOH . 
H 3 HOH B 6 1210 1210 HOH HOH . 
H 3 HOH B 7 1211 1211 HOH HOH . 
H 3 HOH B 8 1212 1212 HOH HOH . 
H 3 HOH B 9 1214 1214 HOH HOH . 
H 3 HOH B 10 1215 1215 HOH HOH . 
H 3 HOH B 11 1217 1217 HOH HOH . 
H 3 HOH B 12 1218 1218 HOH HOH . 
H 3 HOH B 13 1219 1219 HOH HOH . 
H 3 HOH B 14 1220 1220 HOH HOH . 
H 3 HOH B 15 1222 1222 HOH HOH . 
H 3 HOH B 16 1223 1223 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . F 2 22.933 20.312 19.349 1 100 ? PA NAD 1150 C 1 
HETATM 2 O O1A NAD . . . F 2 23.674 21.583 19.532 1 98.62 ? O1A NAD 1150 C 1 
HETATM 3 O O2A NAD . . . F 2 23.111 19.149 20.364 1 100 ? O2A NAD 1150 C 1 
HETATM 4 O O5B NAD . . . F 2 23.27 19.598 17.904 1 97.34 ? O5B NAD 1150 C 1 
HETATM 5 C C5B NAD . . . F 2 23.663 20.384 16.72 1 95.44 ? C5B NAD 1150 C 1 
HETATM 6 C C4B NAD . . . F 2 24.983 19.807 16.269 1 99.59 ? C4B NAD 1150 C 1 
HETATM 7 O O4B NAD . . . F 2 25.332 20.638 15.074 1 100 ? O4B NAD 1150 C 1 
HETATM 8 C C3B NAD . . . F 2 26.196 20.044 17.246 1 100 ? C3B NAD 1150 C 1 
HETATM 9 O O3B NAD . . . F 2 26.83 18.69 17.489 1 100 ? O3B NAD 1150 C 1 
HETATM 10 C C2B NAD . . . F 2 27.175 20.998 16.611 1 100 ? C2B NAD 1150 C 1 
HETATM 11 O O2B NAD . . . F 2 28.522 20.927 16.855 1 100 ? O2B NAD 1150 C 1 
HETATM 12 C C1B NAD . . . F 2 26.732 20.856 15.094 1 100 ? C1B NAD 1150 C 1 
HETATM 13 N N9A NAD . . . F 2 26.937 22.087 14.338 1 100 ? N9A NAD 1150 C 1 
HETATM 14 C C8A NAD . . . F 2 26.953 23.445 14.615 1 97.78 ? C8A NAD 1150 C 1 
HETATM 15 N N7A NAD . . . F 2 27.184 24.264 13.587 1 96.74 ? N7A NAD 1150 C 1 
HETATM 16 C C5A NAD . . . F 2 27.34 23.454 12.52 1 99.27 ? C5A NAD 1150 C 1 
HETATM 17 C C6A NAD . . . F 2 27.62 23.758 11.067 1 100 ? C6A NAD 1150 C 1 
HETATM 18 N N6A NAD . . . F 2 27.767 24.982 10.584 1 93.71 ? N6A NAD 1150 C 1 
HETATM 19 N N1A NAD . . . F 2 27.703 22.595 10.321 1 100 ? N1A NAD 1150 C 1 
HETATM 20 C C2A NAD . . . F 2 27.571 21.304 10.691 1 100 ? C2A NAD 1150 C 1 
HETATM 21 N N3A NAD . . . F 2 27.304 20.961 12.051 1 98.55 ? N3A NAD 1150 C 1 
HETATM 22 C C4A NAD . . . F 2 27.199 22.08 12.92 1 100 ? C4A NAD 1150 C 1 
HETATM 23 O O3 NAD . . . F 2 21.37 20.586 19.261 1 100 ? O3 NAD 1150 C 1 
HETATM 24 P PN NAD . . . F 2 19.935 19.921 19.041 1 100 ? PN NAD 1150 C 1 
HETATM 25 O O1N NAD . . . F 2 19.255 19.766 20.361 1 100 ? O1N NAD 1150 C 1 
HETATM 26 O O2N NAD . . . F 2 20.126 18.641 18.246 1 100 ? O2N NAD 1150 C 1 
HETATM 27 O O5D NAD . . . F 2 18.972 20.952 18.201 1 99.74 ? O5D NAD 1150 C 1 
HETATM 28 C C5D NAD . . . F 2 19.492 21.209 16.82 1 95.89 ? C5D NAD 1150 C 1 
HETATM 29 C C4D NAD . . . F 2 18.356 21.709 15.978 1 89.95 ? C4D NAD 1150 C 1 
HETATM 30 O O4D NAD . . . F 2 17.107 20.914 16.26 1 89.56 ? O4D NAD 1150 C 1 
HETATM 31 C C3D NAD . . . F 2 17.891 23.153 16.262 1 89.35 ? C3D NAD 1150 C 1 
HETATM 32 O O3D NAD . . . F 2 17.518 23.796 15.022 1 81.5 ? O3D NAD 1150 C 1 
HETATM 33 C C2D NAD . . . F 2 16.723 23.023 17.267 1 88.32 ? C2D NAD 1150 C 1 
HETATM 34 O O2D NAD . . . F 2 15.914 24.148 17.47 1 83.96 ? O2D NAD 1150 C 1 
HETATM 35 C C1D NAD . . . F 2 15.969 21.781 16.678 1 92.38 ? C1D NAD 1150 C 1 
HETATM 36 N N1N NAD . . . F 2 15.065 20.909 17.577 1 98.53 ? N1N NAD 1150 C 1 
HETATM 37 C C2N NAD . . . F 2 15.489 20.43 18.811 1 100 ? C2N NAD 1150 C 1 
HETATM 38 C C3N NAD . . . F 2 14.616 19.652 19.55 1 100 ? C3N NAD 1150 C 1 
HETATM 39 C C7N NAD . . . F 2 15.057 19.101 20.915 1 100 ? C7N NAD 1150 C 1 
HETATM 40 O O7N NAD . . . F 2 14.485 18.196 21.546 1 100 ? O7N NAD 1150 C 1 
HETATM 41 N N7N NAD . . . F 2 16.25 19.744 21.418 1 99.29 ? N7N NAD 1150 C 1 
HETATM 42 C C4N NAD . . . F 2 13.233 19.287 19.101 1 99.19 ? C4N NAD 1150 C 1 
HETATM 43 C C5N NAD . . . F 2 12.901 19.822 17.836 1 98.88 ? C5N NAD 1150 C 1 
HETATM 44 C C6N NAD . . . F 2 13.719 20.591 17.069 1 100 ? C6N NAD 1150 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           44 
#