data_3HDH # _model_server_result.job_id sFwQANyd3cuvQZHFi_S9Fg _model_server_result.datetime_utc '2024-12-01 19:10:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hdh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":350}' # _entry.id 3HDH # _exptl.entry_id 3HDH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HDH _cell.length_a 227.2 _cell.length_b 82.1 _cell.length_c 124.7 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,G,H 1 1 C,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 62.35 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HDH _atom_sites.fract_transf_matrix[1][1] 0.004401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAD A 1 350 350 NAD NAD . E 2 NAD B 1 750 750 NAD NAD . F 2 NAD C 1 1150 1150 NAD NAD . G 3 HOH A 1 1201 1201 HOH HOH . G 3 HOH A 2 1202 1202 HOH HOH . G 3 HOH A 3 1203 1203 HOH HOH . G 3 HOH A 4 1206 1206 HOH HOH . G 3 HOH A 5 1213 1213 HOH HOH . G 3 HOH A 6 1216 1216 HOH HOH . G 3 HOH A 7 1221 1221 HOH HOH . H 3 HOH B 1 1204 1204 HOH HOH . H 3 HOH B 2 1205 1205 HOH HOH . H 3 HOH B 3 1207 1207 HOH HOH . H 3 HOH B 4 1208 1208 HOH HOH . H 3 HOH B 5 1209 1209 HOH HOH . H 3 HOH B 6 1210 1210 HOH HOH . H 3 HOH B 7 1211 1211 HOH HOH . H 3 HOH B 8 1212 1212 HOH HOH . H 3 HOH B 9 1214 1214 HOH HOH . H 3 HOH B 10 1215 1215 HOH HOH . H 3 HOH B 11 1217 1217 HOH HOH . H 3 HOH B 12 1218 1218 HOH HOH . H 3 HOH B 13 1219 1219 HOH HOH . H 3 HOH B 14 1220 1220 HOH HOH . H 3 HOH B 15 1222 1222 HOH HOH . H 3 HOH B 16 1223 1223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 2 53.029 -19.471 9.961 1 65.04 ? PA NAD 350 A 1 HETATM 2 O O1A NAD . . . D 2 52.086 -19.233 8.875 1 65.64 ? O1A NAD 350 A 1 HETATM 3 O O2A NAD . . . D 2 53.252 -18.422 11.058 1 60.13 ? O2A NAD 350 A 1 HETATM 4 O O5B NAD . . . D 2 54.529 -19.702 9.448 1 65.39 ? O5B NAD 350 A 1 HETATM 5 C C5B NAD . . . D 2 54.911 -20.814 8.577 1 67.2 ? C5B NAD 350 A 1 HETATM 6 C C4B NAD . . . D 2 56.36 -20.557 8.245 1 67.32 ? C4B NAD 350 A 1 HETATM 7 O O4B NAD . . . D 2 56.718 -21.7 7.374 1 69.66 ? O4B NAD 350 A 1 HETATM 8 C C3B NAD . . . D 2 56.64 -19.313 7.332 1 69.65 ? C3B NAD 350 A 1 HETATM 9 O O3B NAD . . . D 2 57.655 -18.448 8.044 1 69.01 ? O3B NAD 350 A 1 HETATM 10 C C2B NAD . . . D 2 57.14 -19.789 5.997 1 69.41 ? C2B NAD 350 A 1 HETATM 11 O O2B NAD . . . D 2 58.028 -19.089 5.275 1 70.21 ? O2B NAD 350 A 1 HETATM 12 C C1B NAD . . . D 2 57.595 -21.227 6.381 1 69.34 ? C1B NAD 350 A 1 HETATM 13 N N9A NAD . . . D 2 57.439 -22.151 5.3 1 66.96 ? N9A NAD 350 A 1 HETATM 14 C C8A NAD . . . D 2 56.431 -22.509 4.463 1 68.2 ? C8A NAD 350 A 1 HETATM 15 N N7A NAD . . . D 2 56.707 -23.445 3.582 1 70.87 ? N7A NAD 350 A 1 HETATM 16 C C5A NAD . . . D 2 57.979 -23.78 3.808 1 69.88 ? C5A NAD 350 A 1 HETATM 17 C C6A NAD . . . D 2 58.871 -24.788 3.139 1 74.51 ? C6A NAD 350 A 1 HETATM 18 N N6A NAD . . . D 2 58.485 -25.547 2.144 1 82.05 ? N6A NAD 350 A 1 HETATM 19 N N1A NAD . . . D 2 60.119 -24.806 3.696 1 70.93 ? N1A NAD 350 A 1 HETATM 20 C C2A NAD . . . D 2 60.622 -24.073 4.705 1 69.06 ? C2A NAD 350 A 1 HETATM 21 N N3A NAD . . . D 2 59.808 -23.104 5.377 1 65.3 ? N3A NAD 350 A 1 HETATM 22 C C4A NAD . . . D 2 58.497 -23.003 4.871 1 65.52 ? C4A NAD 350 A 1 HETATM 23 O O3 NAD . . . D 2 52.687 -20.801 10.667 1 54.87 ? O3 NAD 350 A 1 HETATM 24 P PN NAD . . . D 2 52.424 -21.45 12.059 1 44.52 ? PN NAD 350 A 1 HETATM 25 O O1N NAD . . . D 2 51.309 -20.752 12.748 1 46.85 ? O1N NAD 350 A 1 HETATM 26 O O2N NAD . . . D 2 53.751 -21.477 12.79 1 37.52 ? O2N NAD 350 A 1 HETATM 27 O O5D NAD . . . D 2 51.859 -22.942 11.837 1 48.04 ? O5D NAD 350 A 1 HETATM 28 C C5D NAD . . . D 2 52.836 -23.806 11.154 1 44.3 ? C5D NAD 350 A 1 HETATM 29 C C4D NAD . . . D 2 52.48 -25.207 11.499 1 40.31 ? C4D NAD 350 A 1 HETATM 30 O O4D NAD . . . D 2 52.166 -25.305 12.964 1 36.71 ? O4D NAD 350 A 1 HETATM 31 C C3D NAD . . . D 2 51.195 -25.813 10.825 1 39.38 ? C3D NAD 350 A 1 HETATM 32 O O3D NAD . . . D 2 51.454 -27.161 10.357 1 32.12 ? O3D NAD 350 A 1 HETATM 33 C C2D NAD . . . D 2 50.068 -25.802 11.866 1 37.88 ? C2D NAD 350 A 1 HETATM 34 O O2D NAD . . . D 2 49.105 -26.813 11.721 1 38.65 ? O2D NAD 350 A 1 HETATM 35 C C1D NAD . . . D 2 50.853 -25.928 13.206 1 41.58 ? C1D NAD 350 A 1 HETATM 36 N N1N NAD . . . D 2 50.293 -25.292 14.428 1 44.07 ? N1N NAD 350 A 1 HETATM 37 C C2N NAD . . . D 2 49.777 -24.008 14.428 1 54.09 ? C2N NAD 350 A 1 HETATM 38 C C3N NAD . . . D 2 49.282 -23.524 15.598 1 60.96 ? C3N NAD 350 A 1 HETATM 39 C C7N NAD . . . D 2 48.709 -22.131 15.638 1 63.44 ? C7N NAD 350 A 1 HETATM 40 O O7N NAD . . . D 2 47.628 -21.803 16.099 1 68.93 ? O7N NAD 350 A 1 HETATM 41 N N7N NAD . . . D 2 49.593 -21.183 15.058 1 68.24 ? N7N NAD 350 A 1 HETATM 42 C C4N NAD . . . D 2 49.265 -24.289 16.862 1 58.52 ? C4N NAD 350 A 1 HETATM 43 C C5N NAD . . . D 2 49.817 -25.582 16.738 1 53.85 ? C5N NAD 350 A 1 HETATM 44 C C6N NAD . . . D 2 50.32 -26.109 15.612 1 49.62 ? C6N NAD 350 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #