data_3HDH # _model_server_result.job_id 0bNUVGc7uCG_BO4t7BKEKQ _model_server_result.datetime_utc '2025-08-31 15:13:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hdh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":750}' # _entry.id 3HDH # _exptl.entry_id 3HDH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HDH _cell.length_a 227.2 _cell.length_b 82.1 _cell.length_c 124.7 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,G,H 1 1 C,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 62.35 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3HDH _atom_sites.fract_transf_matrix[1][1] 0.004401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAD A 1 350 350 NAD NAD . E 2 NAD B 1 750 750 NAD NAD . F 2 NAD C 1 1150 1150 NAD NAD . G 3 HOH A 1 1201 1201 HOH HOH . G 3 HOH A 2 1202 1202 HOH HOH . G 3 HOH A 3 1203 1203 HOH HOH . G 3 HOH A 4 1206 1206 HOH HOH . G 3 HOH A 5 1213 1213 HOH HOH . G 3 HOH A 6 1216 1216 HOH HOH . G 3 HOH A 7 1221 1221 HOH HOH . H 3 HOH B 1 1204 1204 HOH HOH . H 3 HOH B 2 1205 1205 HOH HOH . H 3 HOH B 3 1207 1207 HOH HOH . H 3 HOH B 4 1208 1208 HOH HOH . H 3 HOH B 5 1209 1209 HOH HOH . H 3 HOH B 6 1210 1210 HOH HOH . H 3 HOH B 7 1211 1211 HOH HOH . H 3 HOH B 8 1212 1212 HOH HOH . H 3 HOH B 9 1214 1214 HOH HOH . H 3 HOH B 10 1215 1215 HOH HOH . H 3 HOH B 11 1217 1217 HOH HOH . H 3 HOH B 12 1218 1218 HOH HOH . H 3 HOH B 13 1219 1219 HOH HOH . H 3 HOH B 14 1220 1220 HOH HOH . H 3 HOH B 15 1222 1222 HOH HOH . H 3 HOH B 16 1223 1223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 19.651 -31.668 48.26 1 76.3 ? PA NAD 750 B 1 HETATM 2 O O1A NAD . . . E 2 19.135 -33.031 48.374 1 77.02 ? O1A NAD 750 B 1 HETATM 3 O O2A NAD . . . E 2 20.921 -31.239 48.996 1 76.54 ? O2A NAD 750 B 1 HETATM 4 O O5B NAD . . . E 2 18.58 -30.566 48.754 1 75.9 ? O5B NAD 750 B 1 HETATM 5 C C5B NAD . . . E 2 17.132 -30.72 48.525 1 74.37 ? C5B NAD 750 B 1 HETATM 6 C C4B NAD . . . E 2 16.473 -30.539 49.88 1 71.31 ? C4B NAD 750 B 1 HETATM 7 O O4B NAD . . . E 2 15.013 -30.71 49.594 1 70.55 ? O4B NAD 750 B 1 HETATM 8 C C3B NAD . . . E 2 16.77 -31.662 50.946 1 70.16 ? C3B NAD 750 B 1 HETATM 9 O O3B NAD . . . E 2 17.295 -30.984 52.195 1 66.18 ? O3B NAD 750 B 1 HETATM 10 C C2B NAD . . . E 2 15.512 -32.414 51.236 1 70.52 ? C2B NAD 750 B 1 HETATM 11 O O2B NAD . . . E 2 15.274 -32.879 52.481 1 71.77 ? O2B NAD 750 B 1 HETATM 12 C C1B NAD . . . E 2 14.447 -31.388 50.687 1 72.85 ? C1B NAD 750 B 1 HETATM 13 N N9A NAD . . . E 2 13.236 -32.036 50.18 1 73.02 ? N9A NAD 750 B 1 HETATM 14 C C8A NAD . . . E 2 12.927 -33.189 49.504 1 77.87 ? C8A NAD 750 B 1 HETATM 15 N N7A NAD . . . E 2 11.643 -33.394 49.226 1 73.04 ? N7A NAD 750 B 1 HETATM 16 C C5A NAD . . . E 2 11.002 -32.33 49.721 1 68.34 ? C5A NAD 750 B 1 HETATM 17 C C6A NAD . . . E 2 9.547 -31.961 49.723 1 66.35 ? C6A NAD 750 B 1 HETATM 18 N N6A NAD . . . E 2 8.607 -32.702 49.205 1 64.36 ? N6A NAD 750 B 1 HETATM 19 N N1A NAD . . . E 2 9.33 -30.771 50.347 1 66.36 ? N1A NAD 750 B 1 HETATM 20 C C2A NAD . . . E 2 10.197 -29.921 50.921 1 70.08 ? C2A NAD 750 B 1 HETATM 21 N N3A NAD . . . E 2 11.593 -30.218 50.945 1 69.36 ? N3A NAD 750 B 1 HETATM 22 C C4A NAD . . . E 2 11.935 -31.443 50.326 1 70.51 ? C4A NAD 750 B 1 HETATM 23 O O3 NAD . . . E 2 19.873 -31.294 46.782 1 79.06 ? O3 NAD 750 B 1 HETATM 24 P PN NAD . . . E 2 20.441 -30.197 45.838 1 78.71 ? PN NAD 750 B 1 HETATM 25 O O1N NAD . . . E 2 21.791 -30.586 45.37 1 81.41 ? O1N NAD 750 B 1 HETATM 26 O O2N NAD . . . E 2 20.356 -28.869 46.569 1 67.98 ? O2N NAD 750 B 1 HETATM 27 O O5D NAD . . . E 2 19.566 -30.181 44.464 1 77.39 ? O5D NAD 750 B 1 HETATM 28 C C5D NAD . . . E 2 18.138 -29.814 44.674 1 69.51 ? C5D NAD 750 B 1 HETATM 29 C C4D NAD . . . E 2 17.637 -29.171 43.414 1 61.47 ? C4D NAD 750 B 1 HETATM 30 O O4D NAD . . . E 2 18.657 -28.205 42.891 1 58.57 ? O4D NAD 750 B 1 HETATM 31 C C3D NAD . . . E 2 17.385 -30.103 42.186 1 58.37 ? C3D NAD 750 B 1 HETATM 32 O O3D NAD . . . E 2 16.14 -29.718 41.549 1 63.43 ? O3D NAD 750 B 1 HETATM 33 C C2D NAD . . . E 2 18.586 -29.947 41.22 1 56.97 ? C2D NAD 750 B 1 HETATM 34 O O2D NAD . . . E 2 18.338 -30.199 39.856 1 53.77 ? O2D NAD 750 B 1 HETATM 35 C C1D NAD . . . E 2 19.028 -28.471 41.48 1 58.59 ? C1D NAD 750 B 1 HETATM 36 N N1N NAD . . . E 2 20.495 -28.086 41.331 1 60.58 ? N1N NAD 750 B 1 HETATM 37 C C2N NAD . . . E 2 21.547 -28.828 41.878 1 60.08 ? C2N NAD 750 B 1 HETATM 38 C C3N NAD . . . E 2 22.825 -28.379 41.678 1 60.03 ? C3N NAD 750 B 1 HETATM 39 C C7N NAD . . . E 2 24.008 -29.146 42.253 1 61.25 ? C7N NAD 750 B 1 HETATM 40 O O7N NAD . . . E 2 25.07 -29.375 41.69 1 61.77 ? O7N NAD 750 B 1 HETATM 41 N N7N NAD . . . E 2 23.765 -29.595 43.581 1 59.48 ? N7N NAD 750 B 1 HETATM 42 C C4N NAD . . . E 2 23.15 -27.157 40.916 1 62.13 ? C4N NAD 750 B 1 HETATM 43 C C5N NAD . . . E 2 22.012 -26.491 40.409 1 61.23 ? C5N NAD 750 B 1 HETATM 44 C C6N NAD . . . E 2 20.738 -26.881 40.574 1 61.14 ? C6N NAD 750 B 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 700 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #