data_3HDM # _model_server_result.job_id Ek_mP2DgtieX6JTD-UYykw _model_server_result.datetime_utc '2025-07-30 19:33:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hdm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3HDM # _exptl.entry_id 3HDM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.337 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(5-phenyl-1H-pyrrolo[2,3-b]pyridin-3-yl)benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3HDM _cell.length_a 96.978 _cell.length_b 96.978 _cell.length_c 150.769 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HDM _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 135 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 193 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 200 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 258 _struct_conn.ptnr2_symmetry 12_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.75 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H14 N2 O2' _chem_comp.formula_weight 314.337 _chem_comp.id MMG _chem_comp.mon_nstd_flag . _chem_comp.name '4-(5-phenyl-1H-pyrrolo[2,3-b]pyridin-3-yl)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C4 MMG doub 237 n y C4 C13 MMG sing 238 n y C4 H4 MMG sing 239 n n C3 C5 MMG sing 240 n y C5 C13 MMG doub 241 n y C5 H5 MMG sing 242 n n C14 C6 MMG doub 243 n y C8 C6 MMG sing 244 n y C6 H6 MMG sing 245 n n C9 C7 MMG doub 246 n y C7 C14 MMG sing 247 n y C7 H7 MMG sing 248 n n C15 C8 MMG doub 249 n y C8 H8 MMG sing 250 n n C16 C10 MMG doub 251 n y C10 C17 MMG sing 252 n y C10 H10 MMG sing 253 n n C13 C16 MMG sing 254 n y C9 C15 MMG sing 255 n y C20 C15 MMG sing 256 n n C17 C18 MMG sing 257 n y C17 C19 MMG doub 258 n y O23 C20 MMG doub 259 n n C20 O24 MMG sing 260 n n C1 C3 MMG doub 261 n y C1 C2 MMG sing 262 n y C1 H1 MMG sing 263 n n C2 H2 MMG sing 264 n n C3 H3 MMG sing 265 n n C9 H9 MMG sing 266 n n C18 C11 MMG doub 267 n y C11 N21 MMG sing 268 n y C11 H11 MMG sing 269 n n C16 C12 MMG sing 270 n y C12 N22 MMG doub 271 n y C12 H12 MMG sing 272 n n C14 C18 MMG sing 273 n y N22 C19 MMG sing 274 n y C19 N21 MMG sing 275 n y O24 HO24 MMG sing 276 n n N21 HN21 MMG sing 277 n n # _atom_sites.entry_id 3HDM _atom_sites.fract_transf_matrix[1][1] 0.010312 _atom_sites.fract_transf_matrix[1][2] 0.005953 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011907 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006633 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MMG A 1 500 500 MMG MMG . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 MMG . . . B 2 39.02 29.899 66.585 1 63.44 ? C4 MMG 500 A 1 HETATM 2 C C5 MMG . . . B 2 36.662 30.073 66.551 1 63.38 ? C5 MMG 500 A 1 HETATM 3 C C6 MMG . . . B 2 34.276 35.729 70.339 1 63.38 ? C6 MMG 500 A 1 HETATM 4 C C7 MMG . . . B 2 34.084 34.098 68.618 1 63.85 ? C7 MMG 500 A 1 HETATM 5 C C8 MMG . . . B 2 33.044 36.245 70.006 1 63.27 ? C8 MMG 500 A 1 HETATM 6 C C10 MMG . . . B 2 36.846 32.262 68.408 1 62.47 ? C10 MMG 500 A 1 HETATM 7 C C13 MMG . . . B 2 37.868 30.454 67.103 1 63.11 ? C13 MMG 500 A 1 HETATM 8 C C15 MMG . . . B 2 32.341 35.675 68.971 1 63.28 ? C15 MMG 500 A 1 HETATM 9 C C17 MMG . . . B 2 36.931 33.124 69.487 1 62.81 ? C17 MMG 500 A 1 HETATM 10 C C20 MMG . . . B 2 31.033 36.238 68.624 1 63.3 ? C20 MMG 500 A 1 HETATM 11 C C1 MMG . . . B 2 37.768 28.627 65.012 1 63.68 ? C1 MMG 500 A 1 HETATM 12 C C2 MMG . . . B 2 38.978 28.993 65.55 1 62.85 ? C2 MMG 500 A 1 HETATM 13 C C3 MMG . . . B 2 36.606 29.17 65.513 1 63.66 ? C3 MMG 500 A 1 HETATM 14 C C9 MMG . . . B 2 32.849 34.605 68.27 1 63.56 ? C9 MMG 500 A 1 HETATM 15 C C11 MMG . . . B 2 36.756 34.636 71.152 1 63.07 ? C11 MMG 500 A 1 HETATM 16 C C12 MMG . . . B 2 38.979 31.445 69.067 1 63.14 ? C12 MMG 500 A 1 HETATM 17 C C14 MMG . . . B 2 34.806 34.656 69.654 1 63.45 ? C14 MMG 500 A 1 HETATM 18 C C16 MMG . . . B 2 37.906 31.402 68.2 1 63.07 ? C16 MMG 500 A 1 HETATM 19 C C18 MMG . . . B 2 36.099 34.136 70.048 1 63.25 ? C18 MMG 500 A 1 HETATM 20 C C19 MMG . . . B 2 38.066 33.05 70.273 1 62.71 ? C19 MMG 500 A 1 HETATM 21 N N21 MMG . . . B 2 37.941 33.967 71.271 1 63.31 ? N21 MMG 500 A 1 HETATM 22 N N22 MMG . . . B 2 39.121 32.249 70.129 1 63.25 ? N22 MMG 500 A 1 HETATM 23 O O23 MMG . . . B 2 30.707 35.822 67.376 1 63.37 ? O23 MMG 500 A 1 HETATM 24 O O24 MMG . . . B 2 30.378 36.966 69.357 1 63 ? O24 MMG 500 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #