data_3HDN # _model_server_result.job_id lVC2TPN4LC4KxnUS9GN0GQ _model_server_result.datetime_utc '2024-12-26 11:03:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hdn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3HDN # _exptl.entry_id 3HDN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.423 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-(5-naphthalen-2-yl-1H-pyrrolo[2,3-b]pyridin-3-yl)phenyl]acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3HDN _cell.length_a 96.812 _cell.length_b 96.812 _cell.length_c 150.779 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HDN _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H18 N2 O2' _chem_comp.formula_weight 378.423 _chem_comp.id GMG _chem_comp.mon_nstd_flag . _chem_comp.name '[4-(5-naphthalen-2-yl-1H-pyrrolo[2,3-b]pyridin-3-yl)phenyl]acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C4 GMG doub 129 n y C19 C4 GMG sing 130 n y C4 H4 GMG sing 131 n n C5 C8 GMG doub 132 n y C5 C16 GMG sing 133 n y C5 H5 GMG sing 134 n n C16 C6 GMG doub 135 n y C6 C9 GMG sing 136 n y C6 H6 GMG sing 137 n n C7 C17 GMG doub 138 n y C7 C10 GMG sing 139 n y C7 H7 GMG sing 140 n n C8 C18 GMG sing 141 n y C8 H8 GMG sing 142 n n C10 C20 GMG doub 143 n y C10 H10 GMG sing 144 n n C23 C13 GMG doub 145 n y C13 N26 GMG sing 146 n y C13 H13 GMG sing 147 n n C25 C15 GMG sing 148 n n C15 C16 GMG sing 149 n n C15 H15 GMG sing 150 n n C15 H15A GMG sing 151 n n C3 C17 GMG sing 152 n y C17 C19 GMG sing 153 n y C20 C11 GMG sing 154 n y C20 C21 GMG sing 155 n y C21 C12 GMG sing 156 n y C21 C14 GMG doub 157 n y C12 C22 GMG doub 158 n y C22 C23 GMG sing 159 n y C22 C24 GMG sing 160 n y C24 N27 GMG doub 161 n y C24 N26 GMG sing 162 n y C3 C1 GMG doub 163 n y C1 C2 GMG sing 164 n y C1 H1 GMG sing 165 n n C2 H2 GMG sing 166 n n C3 H3 GMG sing 167 n n C18 C9 GMG doub 168 n y C9 H9 GMG sing 169 n n C19 C11 GMG doub 170 n y C11 H11 GMG sing 171 n n C12 H12 GMG sing 172 n n C14 N27 GMG sing 173 n y C14 H14 GMG sing 174 n n C18 C23 GMG sing 175 n y O29 C25 GMG doub 176 n n C25 O28 GMG sing 177 n n O28 HO28 GMG sing 178 n n N26 HN26 GMG sing 179 n n # _atom_sites.entry_id 3HDN _atom_sites.fract_transf_matrix[1][1] 0.010329 _atom_sites.fract_transf_matrix[1][2] 0.005964 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011927 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006632 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GMG A 1 1 1 GMG GMG . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 432 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 GMG . . . B 2 40.652 27.101 66.84 1 92.61 ? C4 GMG 1 A 1 HETATM 2 C C5 GMG . . . B 2 32.478 33.209 67.689 1 92.58 ? C5 GMG 1 A 1 HETATM 3 C C6 GMG . . . B 2 32.366 35.141 69.083 1 92.42 ? C6 GMG 1 A 1 HETATM 4 C C7 GMG . . . B 2 37.687 28.57 65.308 1 92.44 ? C7 GMG 1 A 1 HETATM 5 C C8 GMG . . . B 2 33.751 32.946 68.149 1 92.44 ? C8 GMG 1 A 1 HETATM 6 C C10 GMG . . . B 2 37.421 29.588 66.199 1 92.44 ? C10 GMG 1 A 1 HETATM 7 C C13 GMG . . . B 2 36.151 34.252 70.656 1 91.7 ? C13 GMG 1 A 1 HETATM 8 C C15 GMG . . . B 2 30.411 34.581 67.655 1 92.86 ? C15 GMG 1 A 1 HETATM 9 C C17 GMG . . . B 2 38.764 27.736 65.516 1 92.6 ? C17 GMG 1 A 1 HETATM 10 C C20 GMG . . . B 2 38.219 29.798 67.307 1 92.39 ? C20 GMG 1 A 1 HETATM 11 C C21 GMG . . . B 2 37.967 30.869 68.256 1 91.89 ? C21 GMG 1 A 1 HETATM 12 C C22 GMG . . . B 2 36.661 32.576 69.228 1 91.6 ? C22 GMG 1 A 1 HETATM 13 C C24 GMG . . . B 2 37.725 32.779 70.087 1 91.47 ? C24 GMG 1 A 1 HETATM 14 C C1 GMG . . . B 2 40.12 25.886 64.857 1 92.56 ? C1 GMG 1 A 1 HETATM 15 C C2 GMG . . . B 2 40.926 26.079 65.958 1 92.54 ? C2 GMG 1 A 1 HETATM 16 C C3 GMG . . . B 2 39.039 26.713 64.634 1 92.58 ? C3 GMG 1 A 1 HETATM 17 C C9 GMG . . . B 2 33.636 34.876 69.543 1 92.24 ? C9 GMG 1 A 1 HETATM 18 C C11 GMG . . . B 2 39.293 28.951 67.498 1 92.52 ? C11 GMG 1 A 1 HETATM 19 C C12 GMG . . . B 2 36.781 31.579 68.271 1 91.73 ? C12 GMG 1 A 1 HETATM 20 C C14 GMG . . . B 2 38.94 31.191 69.179 1 91.69 ? C14 GMG 1 A 1 HETATM 21 C C16 GMG . . . B 2 31.784 34.305 68.155 1 92.64 ? C16 GMG 1 A 1 HETATM 22 C C18 GMG . . . B 2 34.336 33.78 69.08 1 92.27 ? C18 GMG 1 A 1 HETATM 23 C C19 GMG . . . B 2 39.57 27.928 66.619 1 92.63 ? C19 GMG 1 A 1 HETATM 24 C C23 GMG . . . B 2 35.66 33.52 69.597 1 91.79 ? C23 GMG 1 A 1 HETATM 25 C C25 GMG . . . B 2 30.405 35.76 66.737 1 93.37 ? C25 GMG 1 A 1 HETATM 26 N N26 GMG . . . B 2 37.402 33.793 70.937 1 91.5 ? N26 GMG 1 A 1 HETATM 27 N N27 GMG . . . B 2 38.887 32.131 70.122 1 91.43 ? N27 GMG 1 A 1 HETATM 28 O O28 GMG . . . B 2 29.222 36.416 66.831 1 93.58 ? O28 GMG 1 A 1 HETATM 29 O O29 GMG . . . B 2 31.327 36.091 66.004 1 93.56 ? O29 GMG 1 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #