data_3HDT # _model_server_result.job_id bqf66rD3tWDA9eeKaA3YCw _model_server_result.datetime_utc '2024-12-01 19:16:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hdt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 3HDT # _exptl.entry_id 3HDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HDT _cell.length_a 95.443 _cell.length_b 95.443 _cell.length_c 109.375 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 108 A VAL 105 1_555 A N MSE 109 A MSE 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 109 A MSE 106 1_555 A N ARG 110 A ARG 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C VAL 154 A VAL 151 1_555 A N MSE 155 A MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 A C MSE 155 A MSE 152 1_555 A N GLU 156 A GLU 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale5 A C SER 190 A SER 187 1_555 A N MSE 191 A MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 191 A MSE 188 1_555 A N LYS 192 A LYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C PHE 221 A PHE 218 1_555 A N MSE 222 A MSE 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 B C VAL 108 B VAL 105 1_555 B N MSE 109 B MSE 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 B C MSE 109 B MSE 106 1_555 B N ARG 110 B ARG 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 B C VAL 154 B VAL 151 1_555 B N MSE 155 B MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale11 B C MSE 155 B MSE 152 1_555 B N GLU 156 B GLU 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 B C SER 190 B SER 187 1_555 B N MSE 191 B MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale13 B C MSE 191 B MSE 188 1_555 B N LYS 192 B LYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale14 B C PHE 221 B PHE 218 1_555 B N MSE 222 B MSE 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 3HDT _atom_sites.fract_transf_matrix[1][1] 0.010477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 301 301 PO4 PO4 . D 3 CL A 1 302 302 CL CL . E 2 PO4 B 1 301 301 PO4 PO4 . F 3 CL B 1 302 302 CL CL . G 4 HOH A 1 222 2 HOH HOH . G 4 HOH A 2 223 5 HOH HOH . G 4 HOH A 3 224 7 HOH HOH . G 4 HOH A 4 225 11 HOH HOH . G 4 HOH A 5 226 14 HOH HOH . G 4 HOH A 6 227 15 HOH HOH . G 4 HOH A 7 228 16 HOH HOH . G 4 HOH A 8 229 17 HOH HOH . G 4 HOH A 9 230 18 HOH HOH . G 4 HOH A 10 231 19 HOH HOH . G 4 HOH A 11 232 21 HOH HOH . G 4 HOH A 12 233 22 HOH HOH . G 4 HOH A 13 234 23 HOH HOH . G 4 HOH A 14 235 24 HOH HOH . G 4 HOH A 15 236 31 HOH HOH . H 4 HOH B 1 221 1 HOH HOH . H 4 HOH B 2 222 4 HOH HOH . H 4 HOH B 3 223 6 HOH HOH . H 4 HOH B 4 224 8 HOH HOH . H 4 HOH B 5 225 9 HOH HOH . H 4 HOH B 6 226 10 HOH HOH . H 4 HOH B 7 227 12 HOH HOH . H 4 HOH B 8 228 13 HOH HOH . H 4 HOH B 9 229 20 HOH HOH . H 4 HOH B 10 230 25 HOH HOH . H 4 HOH B 11 231 26 HOH HOH . H 4 HOH B 12 232 27 HOH HOH . H 4 HOH B 13 233 28 HOH HOH . H 4 HOH B 14 234 29 HOH HOH . H 4 HOH B 15 235 30 HOH HOH . H 4 HOH B 16 236 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . E 2 20.624 30.45 15.945 0.75 87.8 ? P PO4 301 B 1 HETATM 2 O O1 PO4 . . . E 2 21.851 30.059 16.742 0.75 84.96 ? O1 PO4 301 B 1 HETATM 3 O O2 PO4 . . . E 2 19.343 30.268 16.745 0.75 83.34 ? O2 PO4 301 B 1 HETATM 4 O O3 PO4 . . . E 2 20.751 31.923 15.611 0.75 86.93 ? O3 PO4 301 B 1 HETATM 5 O O4 PO4 . . . E 2 20.621 29.684 14.63 0.75 85.33 ? O4 PO4 301 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #