data_3HE8
#
_model_server_result.job_id            I1m9cHyoYljYzuXXgBHc-g 
_model_server_result.datetime_utc      '2024-11-27 02:15:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3he8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":3968}' 
#
_entry.id    3HE8 
#
_exptl.entry_id    3HE8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3HE8 
_cell.length_a            69.515 
_cell.length_b            69.515 
_cell.length_c            154.434 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HE8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3HE8 
_atom_sites.fract_transf_matrix[1][1]    0.014385 
_atom_sites.fract_transf_matrix[1][2]    0.008305 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016611 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006475 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 3968 3968 GOL GOL . 
D 2 GOL B 1 3968 3968 GOL GOL . 
E 3 HOH A 1 150 150 HOH HOH . 
E 3 HOH A 2 151 2 HOH HOH . 
E 3 HOH A 3 152 152 HOH HOH . 
E 3 HOH A 4 153 7 HOH HOH . 
E 3 HOH A 5 154 154 HOH HOH . 
E 3 HOH A 6 155 155 HOH HOH . 
E 3 HOH A 7 156 8 HOH HOH . 
E 3 HOH A 8 157 157 HOH HOH . 
E 3 HOH A 9 158 158 HOH HOH . 
E 3 HOH A 10 159 9 HOH HOH . 
E 3 HOH A 11 160 160 HOH HOH . 
E 3 HOH A 12 161 10 HOH HOH . 
E 3 HOH A 13 162 162 HOH HOH . 
E 3 HOH A 14 163 14 HOH HOH . 
E 3 HOH A 15 164 15 HOH HOH . 
E 3 HOH A 16 165 16 HOH HOH . 
E 3 HOH A 17 166 17 HOH HOH . 
E 3 HOH A 18 167 19 HOH HOH . 
E 3 HOH A 19 168 168 HOH HOH . 
E 3 HOH A 20 169 21 HOH HOH . 
E 3 HOH A 21 170 170 HOH HOH . 
E 3 HOH A 22 171 171 HOH HOH . 
E 3 HOH A 23 172 23 HOH HOH . 
E 3 HOH A 24 173 26 HOH HOH . 
E 3 HOH A 25 174 174 HOH HOH . 
E 3 HOH A 26 175 27 HOH HOH . 
E 3 HOH A 27 176 176 HOH HOH . 
E 3 HOH A 28 177 28 HOH HOH . 
E 3 HOH A 29 178 29 HOH HOH . 
E 3 HOH A 30 179 179 HOH HOH . 
E 3 HOH A 31 180 180 HOH HOH . 
E 3 HOH A 32 181 30 HOH HOH . 
E 3 HOH A 33 182 36 HOH HOH . 
E 3 HOH A 34 183 37 HOH HOH . 
E 3 HOH A 35 185 38 HOH HOH . 
E 3 HOH A 36 186 186 HOH HOH . 
E 3 HOH A 37 187 41 HOH HOH . 
E 3 HOH A 38 188 42 HOH HOH . 
E 3 HOH A 39 189 46 HOH HOH . 
E 3 HOH A 40 190 49 HOH HOH . 
E 3 HOH A 41 191 191 HOH HOH . 
E 3 HOH A 42 192 192 HOH HOH . 
E 3 HOH A 43 193 50 HOH HOH . 
E 3 HOH A 44 194 55 HOH HOH . 
E 3 HOH A 45 195 57 HOH HOH . 
E 3 HOH A 46 196 58 HOH HOH . 
E 3 HOH A 47 197 59 HOH HOH . 
E 3 HOH A 48 198 64 HOH HOH . 
E 3 HOH A 49 199 66 HOH HOH . 
E 3 HOH A 50 200 67 HOH HOH . 
E 3 HOH A 51 201 71 HOH HOH . 
E 3 HOH A 52 202 202 HOH HOH . 
E 3 HOH A 53 203 203 HOH HOH . 
E 3 HOH A 54 204 72 HOH HOH . 
E 3 HOH A 55 205 73 HOH HOH . 
E 3 HOH A 56 206 206 HOH HOH . 
E 3 HOH A 57 207 207 HOH HOH . 
E 3 HOH A 58 208 208 HOH HOH . 
E 3 HOH A 59 209 78 HOH HOH . 
E 3 HOH A 60 210 210 HOH HOH . 
E 3 HOH A 61 211 80 HOH HOH . 
E 3 HOH A 62 212 212 HOH HOH . 
E 3 HOH A 63 213 81 HOH HOH . 
E 3 HOH A 64 214 214 HOH HOH . 
E 3 HOH A 65 215 215 HOH HOH . 
E 3 HOH A 66 216 216 HOH HOH . 
E 3 HOH A 67 217 82 HOH HOH . 
E 3 HOH A 68 218 218 HOH HOH . 
E 3 HOH A 69 219 84 HOH HOH . 
E 3 HOH A 70 220 87 HOH HOH . 
E 3 HOH A 71 221 89 HOH HOH . 
E 3 HOH A 72 222 98 HOH HOH . 
E 3 HOH A 73 223 223 HOH HOH . 
E 3 HOH A 74 224 99 HOH HOH . 
E 3 HOH A 75 225 105 HOH HOH . 
E 3 HOH A 76 226 106 HOH HOH . 
E 3 HOH A 77 227 227 HOH HOH . 
E 3 HOH A 78 228 107 HOH HOH . 
E 3 HOH A 79 229 229 HOH HOH . 
E 3 HOH A 80 230 113 HOH HOH . 
E 3 HOH A 81 231 114 HOH HOH . 
E 3 HOH A 82 232 232 HOH HOH . 
E 3 HOH A 83 233 115 HOH HOH . 
E 3 HOH A 84 234 234 HOH HOH . 
E 3 HOH A 85 235 116 HOH HOH . 
E 3 HOH A 86 236 119 HOH HOH . 
E 3 HOH A 87 237 120 HOH HOH . 
E 3 HOH A 88 238 238 HOH HOH . 
E 3 HOH A 89 239 121 HOH HOH . 
E 3 HOH A 90 240 240 HOH HOH . 
E 3 HOH A 91 241 122 HOH HOH . 
E 3 HOH A 92 242 124 HOH HOH . 
E 3 HOH A 93 243 126 HOH HOH . 
E 3 HOH A 94 244 127 HOH HOH . 
E 3 HOH A 95 245 129 HOH HOH . 
E 3 HOH A 96 246 246 HOH HOH . 
E 3 HOH A 97 247 130 HOH HOH . 
E 3 HOH A 98 248 137 HOH HOH . 
E 3 HOH A 99 249 138 HOH HOH . 
E 3 HOH A 100 250 139 HOH HOH . 
E 3 HOH A 101 251 142 HOH HOH . 
E 3 HOH A 102 252 252 HOH HOH . 
E 3 HOH A 103 253 146 HOH HOH . 
E 3 HOH A 104 254 148 HOH HOH . 
E 3 HOH A 105 256 256 HOH HOH . 
E 3 HOH A 106 257 257 HOH HOH . 
F 3 HOH B 1 150 1 HOH HOH . 
F 3 HOH B 2 151 151 HOH HOH . 
F 3 HOH B 3 152 3 HOH HOH . 
F 3 HOH B 4 153 153 HOH HOH . 
F 3 HOH B 5 154 4 HOH HOH . 
F 3 HOH B 6 155 5 HOH HOH . 
F 3 HOH B 7 156 156 HOH HOH . 
F 3 HOH B 8 157 6 HOH HOH . 
F 3 HOH B 9 158 12 HOH HOH . 
F 3 HOH B 10 159 159 HOH HOH . 
F 3 HOH B 11 160 18 HOH HOH . 
F 3 HOH B 12 161 161 HOH HOH . 
F 3 HOH B 13 162 20 HOH HOH . 
F 3 HOH B 14 163 163 HOH HOH . 
F 3 HOH B 15 164 164 HOH HOH . 
F 3 HOH B 16 165 165 HOH HOH . 
F 3 HOH B 17 166 166 HOH HOH . 
F 3 HOH B 18 167 167 HOH HOH . 
F 3 HOH B 19 168 22 HOH HOH . 
F 3 HOH B 20 169 169 HOH HOH . 
F 3 HOH B 21 170 24 HOH HOH . 
F 3 HOH B 22 171 25 HOH HOH . 
F 3 HOH B 23 172 172 HOH HOH . 
F 3 HOH B 24 173 173 HOH HOH . 
F 3 HOH B 25 174 31 HOH HOH . 
F 3 HOH B 26 175 175 HOH HOH . 
F 3 HOH B 27 176 32 HOH HOH . 
F 3 HOH B 28 177 177 HOH HOH . 
F 3 HOH B 29 178 178 HOH HOH . 
F 3 HOH B 30 179 33 HOH HOH . 
F 3 HOH B 31 180 34 HOH HOH . 
F 3 HOH B 32 181 181 HOH HOH . 
F 3 HOH B 33 182 182 HOH HOH . 
F 3 HOH B 34 183 39 HOH HOH . 
F 3 HOH B 35 184 184 HOH HOH . 
F 3 HOH B 36 185 185 HOH HOH . 
F 3 HOH B 37 186 43 HOH HOH . 
F 3 HOH B 38 187 44 HOH HOH . 
F 3 HOH B 39 188 47 HOH HOH . 
F 3 HOH B 40 189 48 HOH HOH . 
F 3 HOH B 41 190 190 HOH HOH . 
F 3 HOH B 42 191 52 HOH HOH . 
F 3 HOH B 43 192 53 HOH HOH . 
F 3 HOH B 44 193 193 HOH HOH . 
F 3 HOH B 45 194 194 HOH HOH . 
F 3 HOH B 46 195 54 HOH HOH . 
F 3 HOH B 47 196 56 HOH HOH . 
F 3 HOH B 48 197 60 HOH HOH . 
F 3 HOH B 49 198 198 HOH HOH . 
F 3 HOH B 50 199 199 HOH HOH . 
F 3 HOH B 51 200 61 HOH HOH . 
F 3 HOH B 52 201 63 HOH HOH . 
F 3 HOH B 53 202 65 HOH HOH . 
F 3 HOH B 54 203 68 HOH HOH . 
F 3 HOH B 55 204 69 HOH HOH . 
F 3 HOH B 56 205 75 HOH HOH . 
F 3 HOH B 57 206 77 HOH HOH . 
F 3 HOH B 58 207 79 HOH HOH . 
F 3 HOH B 59 208 83 HOH HOH . 
F 3 HOH B 60 209 85 HOH HOH . 
F 3 HOH B 61 210 86 HOH HOH . 
F 3 HOH B 62 211 90 HOH HOH . 
F 3 HOH B 63 212 91 HOH HOH . 
F 3 HOH B 64 213 213 HOH HOH . 
F 3 HOH B 65 214 94 HOH HOH . 
F 3 HOH B 66 215 95 HOH HOH . 
F 3 HOH B 67 216 96 HOH HOH . 
F 3 HOH B 68 217 217 HOH HOH . 
F 3 HOH B 69 218 97 HOH HOH . 
F 3 HOH B 70 219 102 HOH HOH . 
F 3 HOH B 71 220 103 HOH HOH . 
F 3 HOH B 72 221 221 HOH HOH . 
F 3 HOH B 73 222 222 HOH HOH . 
F 3 HOH B 74 223 110 HOH HOH . 
F 3 HOH B 75 224 111 HOH HOH . 
F 3 HOH B 76 225 112 HOH HOH . 
F 3 HOH B 77 226 117 HOH HOH . 
F 3 HOH B 78 227 118 HOH HOH . 
F 3 HOH B 79 228 228 HOH HOH . 
F 3 HOH B 80 229 125 HOH HOH . 
F 3 HOH B 81 230 230 HOH HOH . 
F 3 HOH B 82 231 128 HOH HOH . 
F 3 HOH B 83 232 131 HOH HOH . 
F 3 HOH B 84 233 233 HOH HOH . 
F 3 HOH B 85 234 132 HOH HOH . 
F 3 HOH B 86 235 133 HOH HOH . 
F 3 HOH B 87 236 236 HOH HOH . 
F 3 HOH B 88 237 136 HOH HOH . 
F 3 HOH B 89 238 140 HOH HOH . 
F 3 HOH B 90 239 239 HOH HOH . 
F 3 HOH B 91 240 141 HOH HOH . 
F 3 HOH B 92 241 241 HOH HOH . 
F 3 HOH B 93 242 242 HOH HOH . 
F 3 HOH B 94 243 144 HOH HOH . 
F 3 HOH B 95 244 145 HOH HOH . 
F 3 HOH B 96 245 245 HOH HOH . 
F 3 HOH B 97 246 149 HOH HOH . 
F 3 HOH B 98 247 40 HOH HOH . 
F 3 HOH B 99 267 267 HOH HOH . 
F 3 HOH B 100 268 268 HOH HOH . 
F 3 HOH B 101 270 270 HOH HOH . 
F 3 HOH B 102 276 276 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 47.824 6.737 13.88 1 34.66 ? C1 GOL 3968 B 1 
HETATM 2 O O1 GOL . . . D 2 47.828 5.369 13.58 1 30.96 ? O1 GOL 3968 B 1 
HETATM 3 C C2 GOL . . . D 2 46.505 7.341 13.446 1 36.83 ? C2 GOL 3968 B 1 
HETATM 4 O O2 GOL . . . D 2 45.372 6.532 13.778 1 38.82 ? O2 GOL 3968 B 1 
HETATM 5 C C3 GOL . . . D 2 46.51 7.616 11.947 1 35.08 ? C3 GOL 3968 B 1 
HETATM 6 O O3 GOL . . . D 2 45.262 8.214 11.667 1 33.48 ? O3 GOL 3968 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#