data_3HEC # _model_server_result.job_id HVjWRPly3-twJq7lirXcxA _model_server_result.datetime_utc '2024-11-24 12:44:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3HEC # _exptl.entry_id 3HEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 493.603 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HEC _cell.length_a 65.029 _cell.length_b 74.031 _cell.length_c 74.497 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H31 N7 O' _chem_comp.formula_weight 493.603 _chem_comp.id STI _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms STI-571;IMATINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 STI doub 338 n y C1 C2 STI sing 339 n y C1 H11 STI sing 340 n n C6 C5 STI sing 341 n y C6 H61 STI sing 342 n n C5 C4 STI doub 343 n y C5 C7 STI sing 344 n y C4 N3 STI sing 345 n y C4 H41 STI sing 346 n n N3 C2 STI doub 347 n y C2 H21 STI sing 348 n n C7 C12 STI doub 349 n y C7 N8 STI sing 350 n y C12 C11 STI sing 351 n y C12 H121 STI sing 352 n n C11 N10 STI doub 353 n y C11 H111 STI sing 354 n n N10 C9 STI sing 355 n y C9 N8 STI doub 356 n y C9 N13 STI sing 357 n n N13 C14 STI sing 358 n n N13 H131 STI sing 359 n n C14 C19 STI doub 360 n y C14 C15 STI sing 361 n y C19 C18 STI sing 362 n y C19 C20 STI sing 363 n n C18 C17 STI doub 364 n y C18 H181 STI sing 365 n n C17 C16 STI sing 366 n y C17 H171 STI sing 367 n n C16 C15 STI doub 368 n y C16 N21 STI sing 369 n n C15 H151 STI sing 370 n n N21 C22 STI sing 371 n n N21 H211 STI sing 372 n n C22 C23 STI sing 373 n n C22 O29 STI doub 374 n n C23 C25 STI doub 375 n y C23 C29 STI sing 376 n y C25 C26 STI sing 377 n y C25 H251 STI sing 378 n n C26 C27 STI doub 379 n y C26 H261 STI sing 380 n n C27 C28 STI sing 381 n y C27 C46 STI sing 382 n n C28 C29 STI doub 383 n y C28 H281 STI sing 384 n n C29 H291 STI sing 385 n n C46 N48 STI sing 386 n n C46 H461 STI sing 387 n n C46 H462 STI sing 388 n n N48 C53 STI sing 389 n n N48 C49 STI sing 390 n n C53 C52 STI sing 391 n n C53 H531 STI sing 392 n n C53 H532 STI sing 393 n n C52 N51 STI sing 394 n n C52 H521 STI sing 395 n n C52 H522 STI sing 396 n n N51 C54 STI sing 397 n n N51 C50 STI sing 398 n n C54 H541 STI sing 399 n n C54 H542 STI sing 400 n n C54 H543 STI sing 401 n n C50 C49 STI sing 402 n n C50 H501 STI sing 403 n n C50 H502 STI sing 404 n n C49 H491 STI sing 405 n n C49 H492 STI sing 406 n n C20 H201 STI sing 407 n n C20 H202 STI sing 408 n n C20 H203 STI sing 409 n n # _atom_sites.entry_id 3HEC _atom_sites.fract_transf_matrix[1][1] 0.015378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STI A 1 1 1 STI STI . C 3 BOG A 1 353 1 BOG BOG . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 3 3 HOH HOH . D 4 HOH A 3 4 4 HOH HOH . D 4 HOH A 4 354 1 HOH HOH . D 4 HOH A 5 355 5 HOH HOH . D 4 HOH A 6 356 6 HOH HOH . D 4 HOH A 7 357 7 HOH HOH . D 4 HOH A 8 358 8 HOH HOH . D 4 HOH A 9 359 9 HOH HOH . D 4 HOH A 10 360 10 HOH HOH . D 4 HOH A 11 361 11 HOH HOH . D 4 HOH A 12 362 12 HOH HOH . D 4 HOH A 13 363 13 HOH HOH . D 4 HOH A 14 364 14 HOH HOH . D 4 HOH A 15 365 15 HOH HOH . D 4 HOH A 16 366 16 HOH HOH . D 4 HOH A 17 367 18 HOH HOH . D 4 HOH A 18 368 19 HOH HOH . D 4 HOH A 19 369 20 HOH HOH . D 4 HOH A 20 370 21 HOH HOH . D 4 HOH A 21 371 22 HOH HOH . D 4 HOH A 22 372 23 HOH HOH . D 4 HOH A 23 373 24 HOH HOH . D 4 HOH A 24 374 25 HOH HOH . D 4 HOH A 25 375 26 HOH HOH . D 4 HOH A 26 376 27 HOH HOH . D 4 HOH A 27 377 28 HOH HOH . D 4 HOH A 28 378 30 HOH HOH . D 4 HOH A 29 379 31 HOH HOH . D 4 HOH A 30 380 32 HOH HOH . D 4 HOH A 31 381 33 HOH HOH . D 4 HOH A 32 382 34 HOH HOH . D 4 HOH A 33 383 35 HOH HOH . D 4 HOH A 34 384 36 HOH HOH . D 4 HOH A 35 385 37 HOH HOH . D 4 HOH A 36 386 38 HOH HOH . D 4 HOH A 37 387 40 HOH HOH . D 4 HOH A 38 388 41 HOH HOH . D 4 HOH A 39 389 42 HOH HOH . D 4 HOH A 40 390 43 HOH HOH . D 4 HOH A 41 391 44 HOH HOH . D 4 HOH A 42 392 45 HOH HOH . D 4 HOH A 43 393 46 HOH HOH . D 4 HOH A 44 394 47 HOH HOH . D 4 HOH A 45 395 48 HOH HOH . D 4 HOH A 46 396 50 HOH HOH . D 4 HOH A 47 397 51 HOH HOH . D 4 HOH A 48 398 52 HOH HOH . D 4 HOH A 49 399 53 HOH HOH . D 4 HOH A 50 400 54 HOH HOH . D 4 HOH A 51 401 55 HOH HOH . D 4 HOH A 52 402 56 HOH HOH . D 4 HOH A 53 403 57 HOH HOH . D 4 HOH A 54 404 58 HOH HOH . D 4 HOH A 55 405 59 HOH HOH . D 4 HOH A 56 406 60 HOH HOH . D 4 HOH A 57 407 61 HOH HOH . D 4 HOH A 58 408 62 HOH HOH . D 4 HOH A 59 409 63 HOH HOH . D 4 HOH A 60 410 64 HOH HOH . D 4 HOH A 61 411 65 HOH HOH . D 4 HOH A 62 412 66 HOH HOH . D 4 HOH A 63 413 67 HOH HOH . D 4 HOH A 64 414 70 HOH HOH . D 4 HOH A 65 415 72 HOH HOH . D 4 HOH A 66 416 73 HOH HOH . D 4 HOH A 67 417 74 HOH HOH . D 4 HOH A 68 418 75 HOH HOH . D 4 HOH A 69 419 77 HOH HOH . D 4 HOH A 70 420 79 HOH HOH . D 4 HOH A 71 421 80 HOH HOH . D 4 HOH A 72 422 81 HOH HOH . D 4 HOH A 73 423 82 HOH HOH . D 4 HOH A 74 424 83 HOH HOH . D 4 HOH A 75 425 84 HOH HOH . D 4 HOH A 76 426 85 HOH HOH . D 4 HOH A 77 427 86 HOH HOH . D 4 HOH A 78 428 87 HOH HOH . D 4 HOH A 79 429 88 HOH HOH . D 4 HOH A 80 430 89 HOH HOH . D 4 HOH A 81 431 90 HOH HOH . D 4 HOH A 82 432 91 HOH HOH . D 4 HOH A 83 433 92 HOH HOH . D 4 HOH A 84 434 93 HOH HOH . D 4 HOH A 85 435 94 HOH HOH . D 4 HOH A 86 436 95 HOH HOH . D 4 HOH A 87 437 96 HOH HOH . D 4 HOH A 88 438 97 HOH HOH . D 4 HOH A 89 439 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STI . . . B 2 18.848 4.655 -24.743 1 53.4 ? C1 STI 1 A 1 HETATM 2 C C6 STI . . . B 2 18.875 3.747 -23.68 1 53.35 ? C6 STI 1 A 1 HETATM 3 C C5 STI . . . B 2 18.847 2.369 -23.934 1 51.77 ? C5 STI 1 A 1 HETATM 4 C C4 STI . . . B 2 18.786 1.945 -25.27 1 53.58 ? C4 STI 1 A 1 HETATM 5 N N3 STI . . . B 2 18.759 2.852 -26.274 1 54.24 ? N3 STI 1 A 1 HETATM 6 C C2 STI . . . B 2 18.786 4.176 -26.045 1 52.32 ? C2 STI 1 A 1 HETATM 7 C C7 STI . . . B 2 18.855 1.375 -22.793 1 52.52 ? C7 STI 1 A 1 HETATM 8 C C12 STI . . . B 2 18.53 1.762 -21.483 1 50.22 ? C12 STI 1 A 1 HETATM 9 C C11 STI . . . B 2 18.54 0.844 -20.439 1 49.39 ? C11 STI 1 A 1 HETATM 10 N N10 STI . . . B 2 18.85 -0.424 -20.697 1 48.95 ? N10 STI 1 A 1 HETATM 11 C C9 STI . . . B 2 19.155 -0.787 -21.967 1 48.62 ? C9 STI 1 A 1 HETATM 12 N N8 STI . . . B 2 19.15 0.072 -23.006 1 50.35 ? N8 STI 1 A 1 HETATM 13 N N13 STI . . . B 2 19.462 -2.047 -22.258 1 46.82 ? N13 STI 1 A 1 HETATM 14 C C14 STI . . . B 2 19.722 -2.954 -21.307 1 44.59 ? C14 STI 1 A 1 HETATM 15 C C19 STI . . . B 2 21.147 -3.226 -21.073 1 43.06 ? C19 STI 1 A 1 HETATM 16 C C18 STI . . . B 2 21.441 -4.178 -20.121 1 41.96 ? C18 STI 1 A 1 HETATM 17 C C17 STI . . . B 2 20.415 -4.821 -19.421 1 44.35 ? C17 STI 1 A 1 HETATM 18 C C16 STI . . . B 2 19.042 -4.587 -19.615 1 44.16 ? C16 STI 1 A 1 HETATM 19 C C15 STI . . . B 2 18.712 -3.632 -20.596 1 43.92 ? C15 STI 1 A 1 HETATM 20 N N21 STI . . . B 2 18.124 -5.304 -18.848 1 43.5 ? N21 STI 1 A 1 HETATM 21 C C22 STI . . . B 2 16.821 -5.438 -19.143 1 44.98 ? C22 STI 1 A 1 HETATM 22 C C23 STI . . . B 2 15.797 -6.294 -18.43 1 45.59 ? C23 STI 1 A 1 HETATM 23 C C25 STI . . . B 2 15.841 -6.499 -17.046 1 45.53 ? C25 STI 1 A 1 HETATM 24 C C26 STI . . . B 2 14.794 -7.245 -16.481 1 47.63 ? C26 STI 1 A 1 HETATM 25 C C27 STI . . . B 2 13.712 -7.787 -17.251 1 47.35 ? C27 STI 1 A 1 HETATM 26 C C28 STI . . . B 2 13.674 -7.581 -18.631 1 44.91 ? C28 STI 1 A 1 HETATM 27 C C29 STI . . . B 2 14.718 -6.824 -19.19 1 45.37 ? C29 STI 1 A 1 HETATM 28 C C46 STI . . . B 2 12.632 -8.605 -16.602 1 45.88 ? C46 STI 1 A 1 HETATM 29 N N48 STI . . . B 2 12.547 -8.748 -15.339 1 44.42 ? N48 STI 1 A 1 HETATM 30 C C53 STI . . . B 2 12.964 -7.586 -14.559 1 43.2 ? C53 STI 1 A 1 HETATM 31 C C52 STI . . . B 2 11.834 -7.245 -13.595 1 43.01 ? C52 STI 1 A 1 HETATM 32 N N51 STI . . . B 2 11.698 -8.39 -12.671 1 41.53 ? N51 STI 1 A 1 HETATM 33 C C54 STI . . . B 2 11.359 -8.092 -11.285 1 37.48 ? C54 STI 1 A 1 HETATM 34 C C50 STI . . . B 2 11.886 -9.77 -13.111 1 39.94 ? C50 STI 1 A 1 HETATM 35 C C49 STI . . . B 2 11.91 -9.885 -14.658 1 43.86 ? C49 STI 1 A 1 HETATM 36 O O29 STI . . . B 2 16.294 -4.756 -20.007 1 44.55 ? O29 STI 1 A 1 HETATM 37 C C20 STI . . . B 2 22.208 -2.487 -21.86 1 41.84 ? C20 STI 1 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #