data_3HEC # _model_server_result.job_id BdpRvmF6dWYfs0nPPx4Ozg _model_server_result.datetime_utc '2024-11-24 12:56:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":353}' # _entry.id 3HEC # _exptl.entry_id 3HEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HEC _cell.length_a 65.029 _cell.length_b 74.031 _cell.length_c 74.497 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3HEC _atom_sites.fract_transf_matrix[1][1] 0.015378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STI A 1 1 1 STI STI . C 3 BOG A 1 353 1 BOG BOG . D 4 HOH A 1 2 2 HOH HOH . D 4 HOH A 2 3 3 HOH HOH . D 4 HOH A 3 4 4 HOH HOH . D 4 HOH A 4 354 1 HOH HOH . D 4 HOH A 5 355 5 HOH HOH . D 4 HOH A 6 356 6 HOH HOH . D 4 HOH A 7 357 7 HOH HOH . D 4 HOH A 8 358 8 HOH HOH . D 4 HOH A 9 359 9 HOH HOH . D 4 HOH A 10 360 10 HOH HOH . D 4 HOH A 11 361 11 HOH HOH . D 4 HOH A 12 362 12 HOH HOH . D 4 HOH A 13 363 13 HOH HOH . D 4 HOH A 14 364 14 HOH HOH . D 4 HOH A 15 365 15 HOH HOH . D 4 HOH A 16 366 16 HOH HOH . D 4 HOH A 17 367 18 HOH HOH . D 4 HOH A 18 368 19 HOH HOH . D 4 HOH A 19 369 20 HOH HOH . D 4 HOH A 20 370 21 HOH HOH . D 4 HOH A 21 371 22 HOH HOH . D 4 HOH A 22 372 23 HOH HOH . D 4 HOH A 23 373 24 HOH HOH . D 4 HOH A 24 374 25 HOH HOH . D 4 HOH A 25 375 26 HOH HOH . D 4 HOH A 26 376 27 HOH HOH . D 4 HOH A 27 377 28 HOH HOH . D 4 HOH A 28 378 30 HOH HOH . D 4 HOH A 29 379 31 HOH HOH . D 4 HOH A 30 380 32 HOH HOH . D 4 HOH A 31 381 33 HOH HOH . D 4 HOH A 32 382 34 HOH HOH . D 4 HOH A 33 383 35 HOH HOH . D 4 HOH A 34 384 36 HOH HOH . D 4 HOH A 35 385 37 HOH HOH . D 4 HOH A 36 386 38 HOH HOH . D 4 HOH A 37 387 40 HOH HOH . D 4 HOH A 38 388 41 HOH HOH . D 4 HOH A 39 389 42 HOH HOH . D 4 HOH A 40 390 43 HOH HOH . D 4 HOH A 41 391 44 HOH HOH . D 4 HOH A 42 392 45 HOH HOH . D 4 HOH A 43 393 46 HOH HOH . D 4 HOH A 44 394 47 HOH HOH . D 4 HOH A 45 395 48 HOH HOH . D 4 HOH A 46 396 50 HOH HOH . D 4 HOH A 47 397 51 HOH HOH . D 4 HOH A 48 398 52 HOH HOH . D 4 HOH A 49 399 53 HOH HOH . D 4 HOH A 50 400 54 HOH HOH . D 4 HOH A 51 401 55 HOH HOH . D 4 HOH A 52 402 56 HOH HOH . D 4 HOH A 53 403 57 HOH HOH . D 4 HOH A 54 404 58 HOH HOH . D 4 HOH A 55 405 59 HOH HOH . D 4 HOH A 56 406 60 HOH HOH . D 4 HOH A 57 407 61 HOH HOH . D 4 HOH A 58 408 62 HOH HOH . D 4 HOH A 59 409 63 HOH HOH . D 4 HOH A 60 410 64 HOH HOH . D 4 HOH A 61 411 65 HOH HOH . D 4 HOH A 62 412 66 HOH HOH . D 4 HOH A 63 413 67 HOH HOH . D 4 HOH A 64 414 70 HOH HOH . D 4 HOH A 65 415 72 HOH HOH . D 4 HOH A 66 416 73 HOH HOH . D 4 HOH A 67 417 74 HOH HOH . D 4 HOH A 68 418 75 HOH HOH . D 4 HOH A 69 419 77 HOH HOH . D 4 HOH A 70 420 79 HOH HOH . D 4 HOH A 71 421 80 HOH HOH . D 4 HOH A 72 422 81 HOH HOH . D 4 HOH A 73 423 82 HOH HOH . D 4 HOH A 74 424 83 HOH HOH . D 4 HOH A 75 425 84 HOH HOH . D 4 HOH A 76 426 85 HOH HOH . D 4 HOH A 77 427 86 HOH HOH . D 4 HOH A 78 428 87 HOH HOH . D 4 HOH A 79 429 88 HOH HOH . D 4 HOH A 80 430 89 HOH HOH . D 4 HOH A 81 431 90 HOH HOH . D 4 HOH A 82 432 91 HOH HOH . D 4 HOH A 83 433 92 HOH HOH . D 4 HOH A 84 434 93 HOH HOH . D 4 HOH A 85 435 94 HOH HOH . D 4 HOH A 86 436 95 HOH HOH . D 4 HOH A 87 437 96 HOH HOH . D 4 HOH A 88 438 97 HOH HOH . D 4 HOH A 89 439 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . C 3 -5.938 -11.143 -6.211 1 52.21 ? C1 BOG 353 A 1 HETATM 2 O O1 BOG . . . C 3 -6.526 -10.122 -7.033 1 52.19 ? O1 BOG 353 A 1 HETATM 3 C C2 BOG . . . C 3 -6.603 -12.503 -6.411 1 52.68 ? C2 BOG 353 A 1 HETATM 4 O O2 BOG . . . C 3 -7.999 -12.44 -6.127 1 52.35 ? O2 BOG 353 A 1 HETATM 5 C C3 BOG . . . C 3 -5.916 -13.551 -5.539 1 52.7 ? C3 BOG 353 A 1 HETATM 6 O O3 BOG . . . C 3 -6.414 -14.833 -5.883 1 54.18 ? O3 BOG 353 A 1 HETATM 7 C C4 BOG . . . C 3 -4.413 -13.568 -5.762 1 51.94 ? C4 BOG 353 A 1 HETATM 8 O O4 BOG . . . C 3 -3.869 -14.475 -4.806 1 52.37 ? O4 BOG 353 A 1 HETATM 9 C C5 BOG . . . C 3 -3.901 -12.127 -5.609 1 53 ? C5 BOG 353 A 1 HETATM 10 O O5 BOG . . . C 3 -4.579 -11.337 -6.591 1 53.18 ? O5 BOG 353 A 1 HETATM 11 C C6 BOG . . . C 3 -2.405 -11.833 -5.719 1 51.86 ? C6 BOG 353 A 1 HETATM 12 O O6 BOG . . . C 3 -1.718 -12.957 -6.263 1 54.9 ? O6 BOG 353 A 1 HETATM 13 C C1' BOG . . . C 3 -6.14 -8.811 -6.618 1 49.1 ? C1' BOG 353 A 1 HETATM 14 C C2' BOG . . . C 3 -7.3 -8.072 -5.955 1 47.18 ? C2' BOG 353 A 1 HETATM 15 C C3' BOG . . . C 3 -6.769 -6.709 -5.558 1 47.01 ? C3' BOG 353 A 1 HETATM 16 C C4' BOG . . . C 3 -7.337 -6.183 -4.25 1 47.73 ? C4' BOG 353 A 1 HETATM 17 C C5' BOG . . . C 3 -8.265 -5.005 -4.537 1 48.25 ? C5' BOG 353 A 1 HETATM 18 C C6' BOG . . . C 3 -7.452 -3.823 -5.012 1 48.48 ? C6' BOG 353 A 1 HETATM 19 C C7' BOG . . . C 3 -8.313 -2.576 -5.15 1 52.54 ? C7' BOG 353 A 1 HETATM 20 C C8' BOG . . . C 3 -8.04 -1.593 -4.024 1 53.76 ? C8' BOG 353 A 1 # _model_server_stats.io_time_ms 156 _model_server_stats.parse_time_ms 421 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 1079 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 20 #