data_3HEE
#
_model_server_result.job_id            8qaEEWl29BubLNoZhFQgKQ 
_model_server_result.datetime_utc      '2024-10-17 05:27:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hee 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":0}' 
#
_entry.id    3HEE 
#
_exptl.entry_id    3HEE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              230.11 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            RIBOSE-5-PHOSPHATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3HEE 
_cell.length_a            69.381 
_cell.length_b            69.381 
_cell.length_c            153.566 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HEE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C5 H11 O8 P' 
_chem_comp.formula_weight    230.11 
_chem_comp.id                R5P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RIBOSE-5-PHOSPHATE 
_chem_comp.type              saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 R5P doub 277 n n 
C1 C2 R5P sing 278 n n 
C2 O2 R5P sing 279 n n 
C2 C3 R5P sing 280 n n 
C3 O3 R5P sing 281 n n 
C3 C4 R5P sing 282 n n 
C4 O4 R5P sing 283 n n 
C4 C5 R5P sing 284 n n 
C5 O5 R5P sing 285 n n 
O5 P R5P sing 286 n n 
P O1P R5P doub 287 n n 
P O2P R5P sing 288 n n 
P O3P R5P sing 289 n n 
C1 H11 R5P sing 290 n n 
C2 HC2 R5P sing 291 n n 
O2 HO2 R5P sing 292 n n 
C3 HC3 R5P sing 293 n n 
O3 HO3 R5P sing 294 n n 
C4 HC4 R5P sing 295 n n 
O4 HO4 R5P sing 296 n n 
C5 H51 R5P sing 297 n n 
C5 H52 R5P sing 298 n n 
O2P HOP2 R5P sing 299 n n 
O3P HOP3 R5P sing 300 n n 
#
_atom_sites.entry_id                     3HEE 
_atom_sites.fract_transf_matrix[1][1]    0.014413 
_atom_sites.fract_transf_matrix[1][2]    0.008321 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016643 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006512 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 R5P A 1 651 651 R5P R5P . 
D 2 R5P B 1 0 0 R5P R5P . 
E 3 HOH A 1 150 2 HOH HOH . 
E 3 HOH A 2 151 4 HOH HOH . 
E 3 HOH A 3 152 152 HOH HOH . 
E 3 HOH A 4 153 153 HOH HOH . 
E 3 HOH A 5 154 154 HOH HOH . 
E 3 HOH A 6 155 5 HOH HOH . 
E 3 HOH A 7 156 156 HOH HOH . 
E 3 HOH A 8 157 6 HOH HOH . 
E 3 HOH A 9 158 8 HOH HOH . 
E 3 HOH A 10 159 159 HOH HOH . 
E 3 HOH A 11 160 11 HOH HOH . 
E 3 HOH A 12 161 161 HOH HOH . 
E 3 HOH A 13 162 16 HOH HOH . 
E 3 HOH A 14 163 17 HOH HOH . 
E 3 HOH A 15 164 20 HOH HOH . 
E 3 HOH A 16 165 21 HOH HOH . 
E 3 HOH A 17 166 22 HOH HOH . 
E 3 HOH A 18 167 24 HOH HOH . 
E 3 HOH A 19 168 27 HOH HOH . 
E 3 HOH A 20 169 28 HOH HOH . 
E 3 HOH A 21 170 30 HOH HOH . 
E 3 HOH A 22 171 32 HOH HOH . 
E 3 HOH A 23 172 172 HOH HOH . 
E 3 HOH A 24 173 33 HOH HOH . 
E 3 HOH A 25 174 34 HOH HOH . 
E 3 HOH A 26 175 35 HOH HOH . 
E 3 HOH A 27 176 36 HOH HOH . 
E 3 HOH A 28 177 40 HOH HOH . 
E 3 HOH A 29 178 43 HOH HOH . 
E 3 HOH A 30 179 47 HOH HOH . 
E 3 HOH A 31 180 48 HOH HOH . 
E 3 HOH A 32 181 49 HOH HOH . 
E 3 HOH A 33 182 182 HOH HOH . 
E 3 HOH A 34 183 51 HOH HOH . 
E 3 HOH A 35 184 184 HOH HOH . 
E 3 HOH A 36 185 185 HOH HOH . 
E 3 HOH A 37 186 53 HOH HOH . 
E 3 HOH A 38 187 187 HOH HOH . 
E 3 HOH A 39 188 54 HOH HOH . 
E 3 HOH A 40 189 57 HOH HOH . 
E 3 HOH A 41 190 58 HOH HOH . 
E 3 HOH A 42 191 59 HOH HOH . 
E 3 HOH A 43 192 61 HOH HOH . 
E 3 HOH A 44 193 193 HOH HOH . 
E 3 HOH A 45 194 194 HOH HOH . 
E 3 HOH A 46 195 67 HOH HOH . 
E 3 HOH A 47 196 196 HOH HOH . 
E 3 HOH A 48 197 70 HOH HOH . 
E 3 HOH A 49 198 72 HOH HOH . 
E 3 HOH A 50 199 74 HOH HOH . 
E 3 HOH A 51 200 77 HOH HOH . 
E 3 HOH A 52 201 82 HOH HOH . 
E 3 HOH A 53 202 83 HOH HOH . 
E 3 HOH A 54 203 203 HOH HOH . 
E 3 HOH A 55 204 87 HOH HOH . 
E 3 HOH A 56 205 90 HOH HOH . 
E 3 HOH A 57 206 92 HOH HOH . 
E 3 HOH A 58 207 93 HOH HOH . 
E 3 HOH A 59 208 98 HOH HOH . 
E 3 HOH A 60 209 102 HOH HOH . 
E 3 HOH A 61 210 104 HOH HOH . 
E 3 HOH A 62 211 105 HOH HOH . 
E 3 HOH A 63 212 212 HOH HOH . 
E 3 HOH A 64 213 110 HOH HOH . 
E 3 HOH A 65 214 214 HOH HOH . 
E 3 HOH A 66 215 113 HOH HOH . 
E 3 HOH A 67 216 115 HOH HOH . 
E 3 HOH A 68 217 217 HOH HOH . 
E 3 HOH A 69 218 121 HOH HOH . 
E 3 HOH A 70 219 128 HOH HOH . 
E 3 HOH A 71 220 130 HOH HOH . 
E 3 HOH A 72 221 132 HOH HOH . 
E 3 HOH A 73 222 135 HOH HOH . 
E 3 HOH A 74 223 136 HOH HOH . 
E 3 HOH A 75 224 138 HOH HOH . 
E 3 HOH A 76 225 140 HOH HOH . 
E 3 HOH A 77 226 141 HOH HOH . 
E 3 HOH A 78 227 144 HOH HOH . 
E 3 HOH A 79 228 146 HOH HOH . 
E 3 HOH A 80 229 148 HOH HOH . 
E 3 HOH A 81 233 233 HOH HOH . 
E 3 HOH A 82 239 239 HOH HOH . 
E 3 HOH A 83 245 245 HOH HOH . 
E 3 HOH A 84 246 246 HOH HOH . 
E 3 HOH A 85 259 259 HOH HOH . 
F 3 HOH B 1 150 150 HOH HOH . 
F 3 HOH B 2 151 1 HOH HOH . 
F 3 HOH B 3 152 3 HOH HOH . 
F 3 HOH B 4 153 9 HOH HOH . 
F 3 HOH B 5 154 10 HOH HOH . 
F 3 HOH B 6 155 12 HOH HOH . 
F 3 HOH B 7 156 13 HOH HOH . 
F 3 HOH B 8 157 14 HOH HOH . 
F 3 HOH B 9 158 15 HOH HOH . 
F 3 HOH B 10 159 18 HOH HOH . 
F 3 HOH B 11 160 160 HOH HOH . 
F 3 HOH B 12 161 19 HOH HOH . 
F 3 HOH B 13 162 23 HOH HOH . 
F 3 HOH B 14 163 25 HOH HOH . 
F 3 HOH B 15 164 26 HOH HOH . 
F 3 HOH B 16 165 31 HOH HOH . 
F 3 HOH B 17 166 166 HOH HOH . 
F 3 HOH B 18 167 37 HOH HOH . 
F 3 HOH B 19 168 168 HOH HOH . 
F 3 HOH B 20 169 38 HOH HOH . 
F 3 HOH B 21 170 39 HOH HOH . 
F 3 HOH B 22 171 171 HOH HOH . 
F 3 HOH B 23 172 42 HOH HOH . 
F 3 HOH B 24 173 44 HOH HOH . 
F 3 HOH B 25 174 45 HOH HOH . 
F 3 HOH B 26 175 46 HOH HOH . 
F 3 HOH B 27 176 50 HOH HOH . 
F 3 HOH B 28 177 52 HOH HOH . 
F 3 HOH B 29 178 178 HOH HOH . 
F 3 HOH B 30 179 179 HOH HOH . 
F 3 HOH B 31 180 55 HOH HOH . 
F 3 HOH B 32 181 181 HOH HOH . 
F 3 HOH B 33 182 56 HOH HOH . 
F 3 HOH B 34 183 60 HOH HOH . 
F 3 HOH B 35 184 62 HOH HOH . 
F 3 HOH B 36 185 63 HOH HOH . 
F 3 HOH B 37 186 64 HOH HOH . 
F 3 HOH B 38 187 65 HOH HOH . 
F 3 HOH B 39 188 188 HOH HOH . 
F 3 HOH B 40 189 69 HOH HOH . 
F 3 HOH B 41 190 71 HOH HOH . 
F 3 HOH B 42 191 73 HOH HOH . 
F 3 HOH B 43 192 192 HOH HOH . 
F 3 HOH B 44 193 78 HOH HOH . 
F 3 HOH B 45 194 79 HOH HOH . 
F 3 HOH B 46 195 81 HOH HOH . 
F 3 HOH B 47 196 84 HOH HOH . 
F 3 HOH B 48 197 86 HOH HOH . 
F 3 HOH B 49 198 88 HOH HOH . 
F 3 HOH B 50 199 199 HOH HOH . 
F 3 HOH B 51 200 200 HOH HOH . 
F 3 HOH B 52 201 89 HOH HOH . 
F 3 HOH B 53 202 91 HOH HOH . 
F 3 HOH B 54 203 94 HOH HOH . 
F 3 HOH B 55 204 96 HOH HOH . 
F 3 HOH B 56 205 97 HOH HOH . 
F 3 HOH B 57 206 99 HOH HOH . 
F 3 HOH B 58 207 101 HOH HOH . 
F 3 HOH B 59 208 103 HOH HOH . 
F 3 HOH B 60 209 209 HOH HOH . 
F 3 HOH B 61 210 107 HOH HOH . 
F 3 HOH B 62 211 108 HOH HOH . 
F 3 HOH B 63 212 114 HOH HOH . 
F 3 HOH B 64 213 116 HOH HOH . 
F 3 HOH B 65 214 118 HOH HOH . 
F 3 HOH B 66 215 215 HOH HOH . 
F 3 HOH B 67 216 119 HOH HOH . 
F 3 HOH B 68 217 122 HOH HOH . 
F 3 HOH B 69 218 218 HOH HOH . 
F 3 HOH B 70 219 126 HOH HOH . 
F 3 HOH B 71 220 129 HOH HOH . 
F 3 HOH B 72 221 131 HOH HOH . 
F 3 HOH B 73 222 137 HOH HOH . 
F 3 HOH B 74 223 139 HOH HOH . 
F 3 HOH B 75 224 224 HOH HOH . 
F 3 HOH B 76 225 225 HOH HOH . 
F 3 HOH B 77 226 143 HOH HOH . 
F 3 HOH B 78 227 227 HOH HOH . 
F 3 HOH B 79 234 234 HOH HOH . 
F 3 HOH B 80 236 236 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 R5P . . . D 2 44.297 6.582 11.5 1 32.55 ? C1 R5P 0 B 1 
HETATM 2 O O1 R5P . . . D 2 43.052 5.989 11.649 1 21.07 ? O1 R5P 0 B 1 
HETATM 3 C C2 R5P . . . D 2 45.21 6.03 12.615 1 31.71 ? C2 R5P 0 B 1 
HETATM 4 O O2 R5P . . . D 2 44.551 6.205 13.826 1 32.45 ? O2 R5P 0 B 1 
HETATM 5 C C3 R5P . . . D 2 46.689 6.516 12.679 1 32.72 ? C3 R5P 0 B 1 
HETATM 6 O O3 R5P . . . D 2 47.604 5.56 13.345 1 25.82 ? O3 R5P 0 B 1 
HETATM 7 C C4 R5P . . . D 2 46.782 7.968 13.184 1 37.03 ? C4 R5P 0 B 1 
HETATM 8 O O4 R5P . . . D 2 45.926 8.845 12.364 1 40.31 ? O4 R5P 0 B 1 
HETATM 9 C C5 R5P . . . D 2 48.16 8.536 12.981 1 37.76 ? C5 R5P 0 B 1 
HETATM 10 O O5 R5P . . . D 2 48.296 9.75 13.785 1 39.26 ? O5 R5P 0 B 1 
HETATM 11 P P R5P . . . D 2 49.699 10.495 13.841 1 34.43 ? P R5P 0 B 1 
HETATM 12 O O1P R5P . . . D 2 50.126 10.905 12.44 1 33.4 ? O1P R5P 0 B 1 
HETATM 13 O O2P R5P . . . D 2 49.511 11.738 14.721 1 35.53 ? O2P R5P 0 B 1 
HETATM 14 O O3P R5P . . . D 2 50.7 9.475 14.33 1 30.9 ? O3P R5P 0 B 1 
#
_model_server_stats.io_time_ms              38 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           14 
#