data_3HEK
#
_model_server_result.job_id            5ZjPqh4daA5A1fLWvgkgvw 
_model_server_result.datetime_utc      '2024-12-21 14:39:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hek 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":901}' 
#
_entry.id    3HEK 
#
_exptl.entry_id    3HEK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              436.879 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{R})-2-[4-[[3,3-bis(fluoranyl)pyrrolidin-1-yl]methyl]phenyl]pyrrolidin-1-yl]-[5-chloranyl-2,4-bis(oxidanyl)phenyl]methanone' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HEK 
_cell.length_a            46.083 
_cell.length_b            80.16 
_cell.length_c            117.434 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HEK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C22 H23 Cl F2 N2 O3' 
_chem_comp.formula_weight    436.879 
_chem_comp.id                BD0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{R})-2-[4-[[3,3-bis(fluoranyl)pyrrolidin-1-yl]methyl]phenyl]pyrrolidin-1-yl]-[5-chloranyl-2,4-bis(oxidanyl)phenyl]methanone' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-{4-[(2R)-1-(5-chloro-2,4-dihydroxybenzoyl)pyrrolidin-2-yl]benzyl}-3,3-difluoropyrrolidinium 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O11 C10 BD0 doub 70 n n 
O5 C4 BD0 sing 71 n n 
C3 C4 BD0 doub 72 n y 
C3 C2 BD0 sing 73 n y 
C4 C6 BD0 sing 74 n y 
O1 C2 BD0 sing 75 n n 
C2 C8 BD0 doub 76 n y 
C6 C10 BD0 sing 77 n n 
C6 C7 BD0 doub 78 n y 
C10 N12 BD0 sing 79 n n 
C8 C7 BD0 sing 80 n y 
C8 CL9 BD0 sing 81 n n 
N12 C13 BD0 sing 82 n n 
N12 C16 BD0 sing 83 n n 
C13 C14 BD0 sing 84 n n 
C16 C17 BD0 sing 85 n n 
C16 C15 BD0 sing 86 n n 
C14 C15 BD0 sing 87 n n 
C18 C17 BD0 doub 88 n y 
C18 C19 BD0 sing 89 n y 
C17 C30 BD0 sing 90 n y 
C24 C23 BD0 sing 91 n n 
C24 C25 BD0 sing 92 n n 
C23 N22 BD0 sing 93 n n 
C19 C20 BD0 doub 94 n y 
C30 C29 BD0 doub 95 n y 
C20 C29 BD0 sing 96 n y 
C20 C21 BD0 sing 97 n n 
N22 C21 BD0 sing 98 n n 
N22 C28 BD0 sing 99 n n 
C25 F27 BD0 sing 100 n n 
C25 F26 BD0 sing 101 n n 
C25 C28 BD0 sing 102 n n 
C7 H1 BD0 sing 103 n n 
C13 H2 BD0 sing 104 n n 
C13 H3 BD0 sing 105 n n 
C15 H4 BD0 sing 106 n n 
C15 H5 BD0 sing 107 n n 
C21 H6 BD0 sing 108 n n 
C21 H7 BD0 sing 109 n n 
C24 H8 BD0 sing 110 n n 
C24 H9 BD0 sing 111 n n 
C28 H10 BD0 sing 112 n n 
C28 H11 BD0 sing 113 n n 
O1 H12 BD0 sing 114 n n 
C3 H13 BD0 sing 115 n n 
O5 H14 BD0 sing 116 n n 
C14 H15 BD0 sing 117 n n 
C14 H16 BD0 sing 118 n n 
C16 H17 BD0 sing 119 n n 
C18 H18 BD0 sing 120 n n 
C19 H19 BD0 sing 121 n n 
C23 H21 BD0 sing 122 n n 
C23 H22 BD0 sing 123 n n 
C29 H23 BD0 sing 124 n n 
C30 H24 BD0 sing 125 n n 
#
_atom_sites.entry_id                     3HEK 
_atom_sites.fract_transf_matrix[1][1]    0.0217 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012475 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008515 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BD0 A 1 901 901 BD0 BD0 . 
D 3 PO4 A 1 902 902 PO4 PO4 . 
E 2 BD0 B 1 901 901 BD0 BD0 . 
F 4 HOH A 1 1 1 HOH HOH . 
F 4 HOH A 2 5 5 HOH HOH . 
F 4 HOH A 3 6 6 HOH HOH . 
F 4 HOH A 4 234 234 HOH HOH . 
F 4 HOH A 5 235 235 HOH HOH . 
F 4 HOH A 6 236 236 HOH HOH . 
F 4 HOH A 7 237 237 HOH HOH . 
F 4 HOH A 8 238 238 HOH HOH . 
F 4 HOH A 9 239 239 HOH HOH . 
F 4 HOH A 10 240 240 HOH HOH . 
F 4 HOH A 11 241 241 HOH HOH . 
F 4 HOH A 12 242 242 HOH HOH . 
F 4 HOH A 13 243 243 HOH HOH . 
F 4 HOH A 14 244 244 HOH HOH . 
F 4 HOH A 15 245 245 HOH HOH . 
F 4 HOH A 16 246 246 HOH HOH . 
F 4 HOH A 17 247 247 HOH HOH . 
F 4 HOH A 18 248 248 HOH HOH . 
F 4 HOH A 19 249 249 HOH HOH . 
F 4 HOH A 20 250 250 HOH HOH . 
F 4 HOH A 21 251 251 HOH HOH . 
F 4 HOH A 22 252 252 HOH HOH . 
F 4 HOH A 23 253 253 HOH HOH . 
F 4 HOH A 24 254 254 HOH HOH . 
F 4 HOH A 25 255 255 HOH HOH . 
F 4 HOH A 26 256 256 HOH HOH . 
F 4 HOH A 27 257 257 HOH HOH . 
F 4 HOH A 28 258 258 HOH HOH . 
F 4 HOH A 29 259 259 HOH HOH . 
F 4 HOH A 30 260 260 HOH HOH . 
F 4 HOH A 31 261 261 HOH HOH . 
F 4 HOH A 32 262 262 HOH HOH . 
F 4 HOH A 33 263 263 HOH HOH . 
F 4 HOH A 34 264 264 HOH HOH . 
F 4 HOH A 35 265 265 HOH HOH . 
F 4 HOH A 36 266 266 HOH HOH . 
F 4 HOH A 37 267 267 HOH HOH . 
F 4 HOH A 38 268 268 HOH HOH . 
F 4 HOH A 39 269 269 HOH HOH . 
F 4 HOH A 40 270 270 HOH HOH . 
F 4 HOH A 41 271 271 HOH HOH . 
F 4 HOH A 42 272 272 HOH HOH . 
F 4 HOH A 43 273 273 HOH HOH . 
F 4 HOH A 44 274 274 HOH HOH . 
F 4 HOH A 45 275 275 HOH HOH . 
F 4 HOH A 46 276 276 HOH HOH . 
F 4 HOH A 47 277 277 HOH HOH . 
F 4 HOH A 48 278 278 HOH HOH . 
F 4 HOH A 49 279 279 HOH HOH . 
F 4 HOH A 50 280 280 HOH HOH . 
F 4 HOH A 51 281 281 HOH HOH . 
F 4 HOH A 52 282 282 HOH HOH . 
F 4 HOH A 53 283 283 HOH HOH . 
F 4 HOH A 54 284 284 HOH HOH . 
F 4 HOH A 55 285 285 HOH HOH . 
F 4 HOH A 56 286 286 HOH HOH . 
F 4 HOH A 57 287 287 HOH HOH . 
F 4 HOH A 58 288 288 HOH HOH . 
F 4 HOH A 59 289 289 HOH HOH . 
F 4 HOH A 60 290 290 HOH HOH . 
F 4 HOH A 61 291 291 HOH HOH . 
F 4 HOH A 62 292 292 HOH HOH . 
F 4 HOH A 63 293 293 HOH HOH . 
F 4 HOH A 64 294 294 HOH HOH . 
F 4 HOH A 65 295 295 HOH HOH . 
F 4 HOH A 66 296 296 HOH HOH . 
F 4 HOH A 67 297 297 HOH HOH . 
F 4 HOH A 68 298 298 HOH HOH . 
F 4 HOH A 69 299 299 HOH HOH . 
F 4 HOH A 70 300 300 HOH HOH . 
F 4 HOH A 71 301 301 HOH HOH . 
F 4 HOH A 72 302 302 HOH HOH . 
F 4 HOH A 73 303 303 HOH HOH . 
F 4 HOH A 74 304 304 HOH HOH . 
F 4 HOH A 75 305 305 HOH HOH . 
F 4 HOH A 76 306 306 HOH HOH . 
F 4 HOH A 77 307 307 HOH HOH . 
F 4 HOH A 78 308 308 HOH HOH . 
F 4 HOH A 79 309 309 HOH HOH . 
F 4 HOH A 80 310 310 HOH HOH . 
F 4 HOH A 81 311 311 HOH HOH . 
F 4 HOH A 82 312 312 HOH HOH . 
F 4 HOH A 83 313 313 HOH HOH . 
F 4 HOH A 84 314 314 HOH HOH . 
F 4 HOH A 85 315 315 HOH HOH . 
F 4 HOH A 86 316 316 HOH HOH . 
F 4 HOH A 87 317 317 HOH HOH . 
F 4 HOH A 88 318 318 HOH HOH . 
F 4 HOH A 89 319 319 HOH HOH . 
F 4 HOH A 90 320 320 HOH HOH . 
F 4 HOH A 91 321 321 HOH HOH . 
F 4 HOH A 92 322 322 HOH HOH . 
F 4 HOH A 93 323 323 HOH HOH . 
G 4 HOH B 1 2 2 HOH HOH . 
G 4 HOH B 2 3 3 HOH HOH . 
G 4 HOH B 3 4 4 HOH HOH . 
G 4 HOH B 4 7 7 HOH HOH . 
G 4 HOH B 5 234 234 HOH HOH . 
G 4 HOH B 6 235 235 HOH HOH . 
G 4 HOH B 7 236 236 HOH HOH . 
G 4 HOH B 8 237 237 HOH HOH . 
G 4 HOH B 9 238 238 HOH HOH . 
G 4 HOH B 10 239 239 HOH HOH . 
G 4 HOH B 11 240 240 HOH HOH . 
G 4 HOH B 12 241 241 HOH HOH . 
G 4 HOH B 13 242 242 HOH HOH . 
G 4 HOH B 14 243 243 HOH HOH . 
G 4 HOH B 15 244 244 HOH HOH . 
G 4 HOH B 16 245 245 HOH HOH . 
G 4 HOH B 17 246 246 HOH HOH . 
G 4 HOH B 18 247 247 HOH HOH . 
G 4 HOH B 19 248 248 HOH HOH . 
G 4 HOH B 20 249 249 HOH HOH . 
G 4 HOH B 21 250 250 HOH HOH . 
G 4 HOH B 22 251 251 HOH HOH . 
G 4 HOH B 23 252 252 HOH HOH . 
G 4 HOH B 24 253 253 HOH HOH . 
G 4 HOH B 25 254 254 HOH HOH . 
G 4 HOH B 26 255 255 HOH HOH . 
G 4 HOH B 27 256 256 HOH HOH . 
G 4 HOH B 28 257 257 HOH HOH . 
G 4 HOH B 29 258 258 HOH HOH . 
G 4 HOH B 30 259 259 HOH HOH . 
G 4 HOH B 31 260 260 HOH HOH . 
G 4 HOH B 32 261 261 HOH HOH . 
G 4 HOH B 33 262 262 HOH HOH . 
G 4 HOH B 34 263 263 HOH HOH . 
G 4 HOH B 35 264 264 HOH HOH . 
G 4 HOH B 36 265 265 HOH HOH . 
G 4 HOH B 37 266 266 HOH HOH . 
G 4 HOH B 38 267 267 HOH HOH . 
G 4 HOH B 39 268 268 HOH HOH . 
G 4 HOH B 40 269 269 HOH HOH . 
G 4 HOH B 41 270 270 HOH HOH . 
G 4 HOH B 42 271 271 HOH HOH . 
G 4 HOH B 43 272 272 HOH HOH . 
G 4 HOH B 44 273 273 HOH HOH . 
G 4 HOH B 45 274 274 HOH HOH . 
G 4 HOH B 46 275 275 HOH HOH . 
G 4 HOH B 47 276 276 HOH HOH . 
G 4 HOH B 48 277 277 HOH HOH . 
G 4 HOH B 49 278 278 HOH HOH . 
G 4 HOH B 50 279 279 HOH HOH . 
G 4 HOH B 51 280 280 HOH HOH . 
G 4 HOH B 52 281 281 HOH HOH . 
G 4 HOH B 53 282 282 HOH HOH . 
G 4 HOH B 54 283 283 HOH HOH . 
G 4 HOH B 55 284 284 HOH HOH . 
G 4 HOH B 56 285 285 HOH HOH . 
G 4 HOH B 57 286 286 HOH HOH . 
G 4 HOH B 58 287 287 HOH HOH . 
G 4 HOH B 59 288 288 HOH HOH . 
G 4 HOH B 60 289 289 HOH HOH . 
G 4 HOH B 61 290 290 HOH HOH . 
G 4 HOH B 62 291 291 HOH HOH . 
G 4 HOH B 63 292 292 HOH HOH . 
G 4 HOH B 64 293 293 HOH HOH . 
G 4 HOH B 65 294 294 HOH HOH . 
G 4 HOH B 66 295 295 HOH HOH . 
G 4 HOH B 67 296 296 HOH HOH . 
G 4 HOH B 68 297 297 HOH HOH . 
G 4 HOH B 69 298 298 HOH HOH . 
G 4 HOH B 70 299 299 HOH HOH . 
G 4 HOH B 71 300 300 HOH HOH . 
G 4 HOH B 72 301 301 HOH HOH . 
G 4 HOH B 73 302 302 HOH HOH . 
G 4 HOH B 74 303 303 HOH HOH . 
G 4 HOH B 75 304 304 HOH HOH . 
G 4 HOH B 76 305 305 HOH HOH . 
G 4 HOH B 77 306 306 HOH HOH . 
G 4 HOH B 78 307 307 HOH HOH . 
G 4 HOH B 79 308 308 HOH HOH . 
G 4 HOH B 80 309 309 HOH HOH . 
G 4 HOH B 81 310 310 HOH HOH . 
G 4 HOH B 82 311 311 HOH HOH . 
G 4 HOH B 83 312 312 HOH HOH . 
G 4 HOH B 84 313 313 HOH HOH . 
G 4 HOH B 85 314 314 HOH HOH . 
G 4 HOH B 86 315 315 HOH HOH . 
G 4 HOH B 87 316 316 HOH HOH . 
G 4 HOH B 88 317 317 HOH HOH . 
G 4 HOH B 89 318 318 HOH HOH . 
G 4 HOH B 90 319 319 HOH HOH . 
G 4 HOH B 91 320 320 HOH HOH . 
G 4 HOH B 92 321 321 HOH HOH . 
G 4 HOH B 93 322 322 HOH HOH . 
G 4 HOH B 94 323 323 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 BD0 . . . E 2 29.919 0.319 19.305 1 18.76 ? C4 BD0 901 B 1 
HETATM 2 C C6 BD0 . . . E 2 30.812 -0.631 18.742 1 21.45 ? C6 BD0 901 B 1 
HETATM 3 C C7 BD0 . . . E 2 32.117 -0.253 18.338 1 22.36 ? C7 BD0 901 B 1 
HETATM 4 C C8 BD0 . . . E 2 32.534 1.087 18.494 1 22.14 ? C8 BD0 901 B 1 
HETATM 5 C C10 BD0 . . . E 2 30.359 -2.035 18.577 1 22.08 ? C10 BD0 901 B 1 
HETATM 6 N N12 BD0 . . . E 2 29.968 -2.481 17.297 1 22.91 ? N12 BD0 901 B 1 
HETATM 7 C C13 BD0 . . . E 2 29.495 -3.856 17.178 1 24.86 ? C13 BD0 901 B 1 
HETATM 8 C C15 BD0 . . . E 2 28.977 -2.691 15.137 1 25.37 ? C15 BD0 901 B 1 
HETATM 9 C C17 BD0 . . . E 2 30.992 -1.347 15.214 1 26.25 ? C17 BD0 901 B 1 
HETATM 10 C C20 BD0 . . . E 2 33.212 -0.587 13.558 1 30.37 ? C20 BD0 901 B 1 
HETATM 11 C C21 BD0 . . . E 2 34.357 -0.188 12.647 1 31.4 ? C21 BD0 901 B 1 
HETATM 12 C C24 BD0 . . . E 2 37.543 0.745 14.273 1 32.76 ? C24 BD0 901 B 1 
HETATM 13 C C28 BD0 . . . E 2 36.416 0.91 12.143 1 31.51 ? C28 BD0 901 B 1 
HETATM 14 O O1 BD0 . . . E 2 32.027 3.347 19.214 1 21.77 ? O1 BD0 901 B 1 
HETATM 15 C C2 BD0 . . . E 2 31.651 2.043 19.052 1 22.65 ? C2 BD0 901 B 1 
HETATM 16 C C3 BD0 . . . E 2 30.336 1.669 19.464 1 21.28 ? C3 BD0 901 B 1 
HETATM 17 O O5 BD0 . . . E 2 28.669 -0.077 19.687 1 18.59 ? O5 BD0 901 B 1 
HETATM 18 CL CL9 BD0 . . . E 2 34.121 1.521 17.998 1 23.47 ? CL9 BD0 901 B 1 
HETATM 19 O O11 BD0 . . . E 2 30.326 -2.727 19.594 1 23.51 ? O11 BD0 901 B 1 
HETATM 20 C C14 BD0 . . . E 2 29.165 -4.089 15.723 1 23.79 ? C14 BD0 901 B 1 
HETATM 21 C C16 BD0 . . . E 2 29.755 -1.707 16.044 1 23.73 ? C16 BD0 901 B 1 
HETATM 22 C C18 BD0 . . . E 2 32.155 -2.179 15.122 1 27.12 ? C18 BD0 901 B 1 
HETATM 23 C C19 BD0 . . . E 2 33.251 -1.804 14.303 1 29.97 ? C19 BD0 901 B 1 
HETATM 24 N N22 BD0 . . . E 2 35.454 0.617 13.197 1 30.07 ? N22 BD0 901 B 1 
HETATM 25 C C23 BD0 . . . E 2 36.233 -0.029 14.269 1 30.28 ? C23 BD0 901 B 1 
HETATM 26 C C25 BD0 . . . E 2 37.632 1.347 12.893 1 30.41 ? C25 BD0 901 B 1 
HETATM 27 F F26 BD0 . . . E 2 38.749 0.957 12.25 1 34.65 ? F26 BD0 901 B 1 
HETATM 28 F F27 BD0 . . . E 2 37.66 2.689 12.982 1 29.69 ? F27 BD0 901 B 1 
HETATM 29 C C29 BD0 . . . E 2 32.061 0.249 13.655 1 29.3 ? C29 BD0 901 B 1 
HETATM 30 C C30 BD0 . . . E 2 30.966 -0.124 14.471 1 26.85 ? C30 BD0 901 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           1083 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           30 
#