data_3HEM # _model_server_result.job_id -PQvyTIXAYrhwM8E2IDN0g _model_server_result.datetime_utc '2025-02-05 18:59:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":303}' # _entry.id 3HEM # _exptl.entry_id 3HEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.456 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-octyloctan-1-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HEM _cell.length_a 106.857 _cell.length_b 106.857 _cell.length_c 224.979 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 x,-y+1/2,-z+1/4 1 0 0 0 -1 0 0 0 -1 0 53.4285 56.24475 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H35 N' _chem_comp.formula_weight 241.456 _chem_comp.id D22 _chem_comp.mon_nstd_flag . _chem_comp.name N-octyloctan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Dioctylamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 D22 sing 86 n n C2 C1 D22 sing 87 n n C3 C4 D22 sing 88 n n C4 C5 D22 sing 89 n n C5 C6 D22 sing 90 n n C6 C7 D22 sing 91 n n C7 C8 D22 sing 92 n n C8 N9 D22 sing 93 n n C10 C11 D22 sing 94 n n C10 N9 D22 sing 95 n n C17 C16 D22 sing 96 n n C16 C15 D22 sing 97 n n C15 C14 D22 sing 98 n n C14 C13 D22 sing 99 n n C13 C12 D22 sing 100 n n C12 C11 D22 sing 101 n n C2 H2 D22 sing 102 n n C2 H2A D22 sing 103 n n C3 H3 D22 sing 104 n n C3 H3A D22 sing 105 n n C4 H4 D22 sing 106 n n C4 H4A D22 sing 107 n n C5 H5 D22 sing 108 n n C5 H5A D22 sing 109 n n C6 H6 D22 sing 110 n n C6 H6A D22 sing 111 n n C7 H7 D22 sing 112 n n C7 H7A D22 sing 113 n n C8 H8 D22 sing 114 n n C8 H8A D22 sing 115 n n C10 H10 D22 sing 116 n n C10 H10A D22 sing 117 n n C17 H17 D22 sing 118 n n C17 H17A D22 sing 119 n n C17 H17B D22 sing 120 n n C16 H16 D22 sing 121 n n C16 H16A D22 sing 122 n n C15 H15 D22 sing 123 n n C15 H15A D22 sing 124 n n C14 H14 D22 sing 125 n n C14 H14A D22 sing 126 n n C13 H13 D22 sing 127 n n C13 H13A D22 sing 128 n n C12 H12 D22 sing 129 n n C12 H12A D22 sing 130 n n C11 H11 D22 sing 131 n n C11 H11A D22 sing 132 n n N9 HN9 D22 sing 133 n n C1 H1 D22 sing 134 n n C1 H1A D22 sing 135 n n C1 H1B D22 sing 136 n n # _atom_sites.entry_id 3HEM _atom_sites.fract_transf_matrix[1][1] 0.009358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D22 A 1 303 1 D22 D22 . C 3 CO3 A 1 304 2 CO3 CO3 . D 4 HOH A 1 305 1 HOH HOH . D 4 HOH A 2 306 2 HOH HOH . D 4 HOH A 3 307 3 HOH HOH . D 4 HOH A 4 308 4 HOH HOH . D 4 HOH A 5 309 6 HOH HOH . D 4 HOH A 6 310 10 HOH HOH . D 4 HOH A 7 311 12 HOH HOH . D 4 HOH A 8 312 65 HOH HOH . D 4 HOH A 9 313 71 HOH HOH . D 4 HOH A 10 314 97 HOH HOH . D 4 HOH A 11 315 107 HOH HOH . D 4 HOH A 12 316 111 HOH HOH . D 4 HOH A 13 317 115 HOH HOH . D 4 HOH A 14 318 123 HOH HOH . D 4 HOH A 15 319 127 HOH HOH . D 4 HOH A 16 320 131 HOH HOH . D 4 HOH A 17 321 136 HOH HOH . D 4 HOH A 18 322 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 D22 . . . B 2 93.899 32.814 19.298 1 60.4 ? C2 D22 303 A 1 HETATM 2 C C3 D22 . . . B 2 95.279 33.26 18.841 1 64.88 ? C3 D22 303 A 1 HETATM 3 C C4 D22 . . . B 2 95.184 34.601 18.144 1 64.44 ? C4 D22 303 A 1 HETATM 4 C C5 D22 . . . B 2 94.689 34.404 16.722 1 64.25 ? C5 D22 303 A 1 HETATM 5 C C6 D22 . . . B 2 95.803 34.694 15.726 1 65.8 ? C6 D22 303 A 1 HETATM 6 C C7 D22 . . . B 2 95.34 34.337 14.32 1 64.9 ? C7 D22 303 A 1 HETATM 7 C C8 D22 . . . B 2 95.892 35.34 13.32 1 67.71 ? C8 D22 303 A 1 HETATM 8 C C10 D22 . . . B 2 96.231 34.315 11.044 1 64.73 ? C10 D22 303 A 1 HETATM 9 C C17 D22 . . . B 2 92.288 29.805 15.999 1 58.56 ? C17 D22 303 A 1 HETATM 10 C C16 D22 . . . B 2 92.326 29.694 14.488 1 64.89 ? C16 D22 303 A 1 HETATM 11 C C15 D22 . . . B 2 93.474 30.512 13.904 1 66.12 ? C15 D22 303 A 1 HETATM 12 C C14 D22 . . . B 2 93.642 30.247 12.412 1 63 ? C14 D22 303 A 1 HETATM 13 C C13 D22 . . . B 2 94.986 30.772 11.906 1 64.33 ? C13 D22 303 A 1 HETATM 14 C C12 D22 . . . B 2 94.9 32.235 11.487 1 62.38 ? C12 D22 303 A 1 HETATM 15 C C11 D22 . . . B 2 96.297 32.834 11.397 1 61.66 ? C11 D22 303 A 1 HETATM 16 N N9 D22 . . . B 2 95.413 35.076 11.974 1 69.82 ? N9 D22 303 A 1 HETATM 17 C C1 D22 . . . B 2 94.008 32.013 20.584 1 56.98 ? C1 D22 303 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #