data_3HFG # _model_server_result.job_id oEMUm79qQkflHraTmmOalg _model_server_result.datetime_utc '2024-11-07 11:23:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hfg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":293}' # _entry.id 3HFG # _exptl.entry_id 3HFG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.41 _cell.angle_gamma 90 _cell.entry_id 3HFG _cell.length_a 56.438 _cell.length_b 152.67 _cell.length_c 74.203 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HFG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 291 n n PA O2A NAP sing 292 n n PA O5B NAP sing 293 n n PA O3 NAP sing 294 n n O2A HOA2 NAP sing 295 n n O5B C5B NAP sing 296 n n C5B C4B NAP sing 297 n n C5B H51A NAP sing 298 n n C5B H52A NAP sing 299 n n C4B O4B NAP sing 300 n n C4B C3B NAP sing 301 n n C4B H4B NAP sing 302 n n O4B C1B NAP sing 303 n n C3B O3B NAP sing 304 n n C3B C2B NAP sing 305 n n C3B H3B NAP sing 306 n n O3B HO3A NAP sing 307 n n C2B O2B NAP sing 308 n n C2B C1B NAP sing 309 n n C2B H2B NAP sing 310 n n O2B P2B NAP sing 311 n n C1B N9A NAP sing 312 n n C1B H1B NAP sing 313 n n N9A C8A NAP sing 314 n y N9A C4A NAP sing 315 n y C8A N7A NAP doub 316 n y C8A H8A NAP sing 317 n n N7A C5A NAP sing 318 n y C5A C6A NAP sing 319 n y C5A C4A NAP doub 320 n y C6A N6A NAP sing 321 n n C6A N1A NAP doub 322 n y N6A H61A NAP sing 323 n n N6A H62A NAP sing 324 n n N1A C2A NAP sing 325 n y C2A N3A NAP doub 326 n y C2A H2A NAP sing 327 n n N3A C4A NAP sing 328 n y O3 PN NAP sing 329 n n PN O1N NAP doub 330 n n PN O2N NAP sing 331 n n PN O5D NAP sing 332 n n O5D C5D NAP sing 333 n n C5D C4D NAP sing 334 n n C5D H51N NAP sing 335 n n C5D H52N NAP sing 336 n n C4D O4D NAP sing 337 n n C4D C3D NAP sing 338 n n C4D H4D NAP sing 339 n n O4D C1D NAP sing 340 n n C3D O3D NAP sing 341 n n C3D C2D NAP sing 342 n n C3D H3D NAP sing 343 n n O3D HO3N NAP sing 344 n n C2D O2D NAP sing 345 n n C2D C1D NAP sing 346 n n C2D H2D NAP sing 347 n n O2D HO2N NAP sing 348 n n C1D N1N NAP sing 349 n n C1D H1D NAP sing 350 n n N1N C2N NAP sing 351 n y N1N C6N NAP doub 352 n y C2N C3N NAP doub 353 n y C2N H2N NAP sing 354 n n C3N C7N NAP sing 355 n n C3N C4N NAP sing 356 n y C7N O7N NAP doub 357 n n C7N N7N NAP sing 358 n n N7N H71N NAP sing 359 n n N7N H72N NAP sing 360 n n C4N C5N NAP doub 361 n y C4N H4N NAP sing 362 n n C5N C6N NAP sing 363 n y C5N H5N NAP sing 364 n n C6N H6N NAP sing 365 n n P2B O1X NAP doub 366 n n P2B O2X NAP sing 367 n n P2B O3X NAP sing 368 n n O2X HOP2 NAP sing 369 n n O3X HOP3 NAP sing 370 n n # _atom_sites.entry_id 3HFG _atom_sites.fract_transf_matrix[1][1] 0.017719 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000746 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 17R A 1 1 1 17R 17R . F 3 NAP A 1 293 1 NAP NAP . G 2 17R B 1 1 1 17R 17R . H 3 NAP B 1 293 1 NAP NAP . I 2 17R C 1 1 1 17R 17R . J 3 NAP C 1 293 1 NAP NAP . K 2 17R D 1 1 1 17R 17R . L 3 NAP D 1 293 1 NAP NAP . M 4 HOH A 1 5 5 HOH HOH . M 4 HOH A 2 294 8 HOH HOH . M 4 HOH A 3 295 11 HOH HOH . M 4 HOH A 4 296 12 HOH HOH . M 4 HOH A 5 297 16 HOH HOH . M 4 HOH A 6 298 24 HOH HOH . M 4 HOH A 7 299 28 HOH HOH . M 4 HOH A 8 300 30 HOH HOH . M 4 HOH A 9 301 41 HOH HOH . M 4 HOH A 10 302 44 HOH HOH . M 4 HOH A 11 303 46 HOH HOH . M 4 HOH A 12 304 56 HOH HOH . M 4 HOH A 13 305 57 HOH HOH . M 4 HOH A 14 306 59 HOH HOH . M 4 HOH A 15 307 60 HOH HOH . M 4 HOH A 16 308 63 HOH HOH . M 4 HOH A 17 309 71 HOH HOH . M 4 HOH A 18 310 72 HOH HOH . M 4 HOH A 19 311 78 HOH HOH . M 4 HOH A 20 312 80 HOH HOH . M 4 HOH A 21 313 83 HOH HOH . M 4 HOH A 22 314 86 HOH HOH . M 4 HOH A 23 315 91 HOH HOH . M 4 HOH A 24 316 93 HOH HOH . M 4 HOH A 25 317 95 HOH HOH . M 4 HOH A 26 318 99 HOH HOH . M 4 HOH A 27 319 101 HOH HOH . M 4 HOH A 28 320 102 HOH HOH . M 4 HOH A 29 321 105 HOH HOH . M 4 HOH A 30 322 111 HOH HOH . M 4 HOH A 31 323 118 HOH HOH . M 4 HOH A 32 324 119 HOH HOH . M 4 HOH A 33 325 121 HOH HOH . M 4 HOH A 34 326 123 HOH HOH . M 4 HOH A 35 327 124 HOH HOH . M 4 HOH A 36 328 128 HOH HOH . M 4 HOH A 37 329 131 HOH HOH . M 4 HOH A 38 330 137 HOH HOH . M 4 HOH A 39 331 152 HOH HOH . M 4 HOH A 40 332 153 HOH HOH . M 4 HOH A 41 333 171 HOH HOH . M 4 HOH A 42 334 172 HOH HOH . N 4 HOH B 1 6 6 HOH HOH . N 4 HOH B 2 294 17 HOH HOH . N 4 HOH B 3 295 22 HOH HOH . N 4 HOH B 4 296 29 HOH HOH . N 4 HOH B 5 297 31 HOH HOH . N 4 HOH B 6 298 32 HOH HOH . N 4 HOH B 7 299 37 HOH HOH . N 4 HOH B 8 300 39 HOH HOH . N 4 HOH B 9 301 40 HOH HOH . N 4 HOH B 10 302 54 HOH HOH . N 4 HOH B 11 303 64 HOH HOH . N 4 HOH B 12 304 66 HOH HOH . N 4 HOH B 13 305 68 HOH HOH . N 4 HOH B 14 306 103 HOH HOH . N 4 HOH B 15 307 106 HOH HOH . N 4 HOH B 16 308 109 HOH HOH . N 4 HOH B 17 309 132 HOH HOH . N 4 HOH B 18 310 135 HOH HOH . N 4 HOH B 19 311 138 HOH HOH . N 4 HOH B 20 312 139 HOH HOH . N 4 HOH B 21 313 140 HOH HOH . N 4 HOH B 22 314 150 HOH HOH . N 4 HOH B 23 315 154 HOH HOH . N 4 HOH B 24 316 155 HOH HOH . N 4 HOH B 25 317 156 HOH HOH . N 4 HOH B 26 318 157 HOH HOH . O 4 HOH C 1 0 0 HOH HOH . O 4 HOH C 2 2 2 HOH HOH . O 4 HOH C 3 3 3 HOH HOH . O 4 HOH C 4 4 4 HOH HOH . O 4 HOH C 5 294 1 HOH HOH . O 4 HOH C 6 295 9 HOH HOH . O 4 HOH C 7 296 10 HOH HOH . O 4 HOH C 8 297 15 HOH HOH . O 4 HOH C 9 298 18 HOH HOH . O 4 HOH C 10 299 21 HOH HOH . O 4 HOH C 11 300 23 HOH HOH . O 4 HOH C 12 301 26 HOH HOH . O 4 HOH C 13 302 27 HOH HOH . O 4 HOH C 14 303 34 HOH HOH . O 4 HOH C 15 304 35 HOH HOH . O 4 HOH C 16 305 36 HOH HOH . O 4 HOH C 17 306 38 HOH HOH . O 4 HOH C 18 307 42 HOH HOH . O 4 HOH C 19 308 43 HOH HOH . O 4 HOH C 20 309 45 HOH HOH . O 4 HOH C 21 310 49 HOH HOH . O 4 HOH C 22 311 50 HOH HOH . O 4 HOH C 23 312 53 HOH HOH . O 4 HOH C 24 313 55 HOH HOH . O 4 HOH C 25 314 58 HOH HOH . O 4 HOH C 26 315 67 HOH HOH . O 4 HOH C 27 316 69 HOH HOH . O 4 HOH C 28 317 70 HOH HOH . O 4 HOH C 29 318 75 HOH HOH . O 4 HOH C 30 319 77 HOH HOH . O 4 HOH C 31 320 88 HOH HOH . O 4 HOH C 32 321 89 HOH HOH . O 4 HOH C 33 322 90 HOH HOH . O 4 HOH C 34 323 97 HOH HOH . O 4 HOH C 35 324 104 HOH HOH . O 4 HOH C 36 325 107 HOH HOH . O 4 HOH C 37 326 110 HOH HOH . O 4 HOH C 38 327 114 HOH HOH . O 4 HOH C 39 328 115 HOH HOH . O 4 HOH C 40 329 116 HOH HOH . O 4 HOH C 41 330 130 HOH HOH . O 4 HOH C 42 331 134 HOH HOH . O 4 HOH C 43 332 136 HOH HOH . O 4 HOH C 44 333 141 HOH HOH . O 4 HOH C 45 334 144 HOH HOH . O 4 HOH C 46 335 158 HOH HOH . O 4 HOH C 47 336 159 HOH HOH . O 4 HOH C 48 337 160 HOH HOH . O 4 HOH C 49 338 161 HOH HOH . O 4 HOH C 50 339 162 HOH HOH . O 4 HOH C 51 340 165 HOH HOH . O 4 HOH C 52 341 169 HOH HOH . P 4 HOH D 1 294 7 HOH HOH . P 4 HOH D 2 295 19 HOH HOH . P 4 HOH D 3 296 33 HOH HOH . P 4 HOH D 4 297 47 HOH HOH . P 4 HOH D 5 298 51 HOH HOH . P 4 HOH D 6 299 52 HOH HOH . P 4 HOH D 7 300 62 HOH HOH . P 4 HOH D 8 301 84 HOH HOH . P 4 HOH D 9 302 85 HOH HOH . P 4 HOH D 10 303 98 HOH HOH . P 4 HOH D 11 304 100 HOH HOH . P 4 HOH D 12 305 112 HOH HOH . P 4 HOH D 13 306 122 HOH HOH . P 4 HOH D 14 307 146 HOH HOH . P 4 HOH D 15 308 149 HOH HOH . P 4 HOH D 16 309 163 HOH HOH . P 4 HOH D 17 310 164 HOH HOH . P 4 HOH D 18 311 166 HOH HOH . P 4 HOH D 19 312 167 HOH HOH . P 4 HOH D 20 313 168 HOH HOH . P 4 HOH D 21 314 173 HOH HOH . P 4 HOH D 22 315 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . J 3 -22.613 49.369 13.449 1 57.31 ? PA NAP 293 C 1 HETATM 2 O O1A NAP . . . J 3 -23.717 48.913 14.321 1 41.93 ? O1A NAP 293 C 1 HETATM 3 O O2A NAP . . . J 3 -23.2 50.009 12.089 1 60.3 ? O2A NAP 293 C 1 HETATM 4 O O5B NAP . . . J 3 -21.755 50.505 14.208 1 54.73 ? O5B NAP 293 C 1 HETATM 5 C C5B NAP . . . J 3 -20.66 50.841 13.345 1 46.84 ? C5B NAP 293 C 1 HETATM 6 C C4B NAP . . . J 3 -19.925 51.983 14.029 1 42.14 ? C4B NAP 293 C 1 HETATM 7 O O4B NAP . . . J 3 -19.013 52.641 13.15 1 37.13 ? O4B NAP 293 C 1 HETATM 8 C C3B NAP . . . J 3 -20.979 53.01 14.442 1 43.49 ? C3B NAP 293 C 1 HETATM 9 O O3B NAP . . . J 3 -20.63 53.528 15.721 1 43.13 ? O3B NAP 293 C 1 HETATM 10 C C2B NAP . . . J 3 -20.838 54.15 13.416 1 42.93 ? C2B NAP 293 C 1 HETATM 11 O O2B NAP . . . J 3 -21.207 55.315 14.157 1 51.62 ? O2B NAP 293 C 1 HETATM 12 C C1B NAP . . . J 3 -19.313 54.055 13.173 1 40.95 ? C1B NAP 293 C 1 HETATM 13 N N9A NAP . . . J 3 -18.927 54.626 11.889 1 43.25 ? N9A NAP 293 C 1 HETATM 14 C C8A NAP . . . J 3 -19.646 54.607 10.725 1 45.25 ? C8A NAP 293 C 1 HETATM 15 N N7A NAP . . . J 3 -18.981 55.215 9.783 1 42.23 ? N7A NAP 293 C 1 HETATM 16 C C5A NAP . . . J 3 -17.802 55.658 10.284 1 44.28 ? C5A NAP 293 C 1 HETATM 17 C C6A NAP . . . J 3 -16.706 56.357 9.761 1 40.12 ? C6A NAP 293 C 1 HETATM 18 N N6A NAP . . . J 3 -16.688 56.756 8.443 1 45.1 ? N6A NAP 293 C 1 HETATM 19 N N1A NAP . . . J 3 -15.688 56.631 10.567 1 41.61 ? N1A NAP 293 C 1 HETATM 20 C C2A NAP . . . J 3 -15.695 56.255 11.833 1 39.35 ? C2A NAP 293 C 1 HETATM 21 N N3A NAP . . . J 3 -16.698 55.599 12.368 1 35.96 ? N3A NAP 293 C 1 HETATM 22 C C4A NAP . . . J 3 -17.757 55.283 11.64 1 44.06 ? C4A NAP 293 C 1 HETATM 23 O O3 NAP . . . J 3 -21.631 48.15 13.086 1 39.98 ? O3 NAP 293 C 1 HETATM 24 P PN NAP . . . J 3 -21.795 46.967 14.172 1 42.29 ? PN NAP 293 C 1 HETATM 25 O O1N NAP . . . J 3 -23.12 46.2 13.977 1 48.45 ? O1N NAP 293 C 1 HETATM 26 O O2N NAP . . . J 3 -21.777 47.533 15.609 1 49.42 ? O2N NAP 293 C 1 HETATM 27 O O5D NAP . . . J 3 -20.553 45.967 13.976 1 41.76 ? O5D NAP 293 C 1 HETATM 28 C C5D NAP . . . J 3 -19.406 46.758 14.269 1 38.36 ? C5D NAP 293 C 1 HETATM 29 C C4D NAP . . . J 3 -18.222 45.81 14.209 1 38.46 ? C4D NAP 293 C 1 HETATM 30 O O4D NAP . . . J 3 -18.722 44.461 14.359 1 42.12 ? O4D NAP 293 C 1 HETATM 31 C C3D NAP . . . J 3 -17.577 45.883 12.818 1 35.74 ? C3D NAP 293 C 1 HETATM 32 O O3D NAP . . . J 3 -16.197 45.528 12.913 1 37.93 ? O3D NAP 293 C 1 HETATM 33 C C2D NAP . . . J 3 -18.368 44.785 12.094 1 43.72 ? C2D NAP 293 C 1 HETATM 34 O O2D NAP . . . J 3 -17.727 44.402 10.874 1 35.48 ? O2D NAP 293 C 1 HETATM 35 C C1D NAP . . . J 3 -18.3 43.708 13.2 1 36.79 ? C1D NAP 293 C 1 HETATM 36 N N1N NAP . . . J 3 -19.233 42.61 12.934 1 40.58 ? N1N NAP 293 C 1 HETATM 37 C C2N NAP . . . J 3 -20.517 42.84 13.105 1 41.54 ? C2N NAP 293 C 1 HETATM 38 C C3N NAP . . . J 3 -21.457 41.839 12.869 1 42.67 ? C3N NAP 293 C 1 HETATM 39 C C7N NAP . . . J 3 -22.895 42.128 13.068 1 49.99 ? C7N NAP 293 C 1 HETATM 40 O O7N NAP . . . J 3 -23.732 41.373 12.604 1 47.57 ? O7N NAP 293 C 1 HETATM 41 N N7N NAP . . . J 3 -23.27 43.235 13.75 1 41.13 ? N7N NAP 293 C 1 HETATM 42 C C4N NAP . . . J 3 -21.008 40.583 12.439 1 39.57 ? C4N NAP 293 C 1 HETATM 43 C C5N NAP . . . J 3 -19.644 40.391 12.27 1 38.56 ? C5N NAP 293 C 1 HETATM 44 C C6N NAP . . . J 3 -18.777 41.437 12.527 1 36.06 ? C6N NAP 293 C 1 HETATM 45 P P2B NAP . . . J 3 -21.375 56.658 13.285 1 44.47 ? P2B NAP 293 C 1 HETATM 46 O O1X NAP . . . J 3 -22.501 56.527 12.332 1 43.39 ? O1X NAP 293 C 1 HETATM 47 O O2X NAP . . . J 3 -20 56.992 12.523 1 45.66 ? O2X NAP 293 C 1 HETATM 48 O O3X NAP . . . J 3 -21.699 57.869 14.294 1 36.56 ? O3X NAP 293 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #