data_3HFW
#
_model_server_result.job_id            cw1ELEQCqjbdSonpHREs_g 
_model_server_result.datetime_utc      '2024-11-15 09:41:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hfw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":358}' 
#
_entry.id    3HFW 
#
_exptl.entry_id    3HFW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3HFW 
_cell.length_a            45.28 
_cell.length_b            52.79 
_cell.length_c            140.34 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HFW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O TRP 24 A TRP 24 1_555 C K K . A K 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? 
metalc ? metalc2 A O GLU 25 A GLU 25 1_555 C K K . A K 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? 
metalc ? metalc3 A O LEU 27 A LEU 27 1_555 C K K . A K 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc4 A OG SER 54 A SER 54 1_555 E MG MG . A MG 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc5 A OD1 ASP 55 A ASP 55 1_555 E MG MG . A MG 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc6 A OD2 ASP 56 A ASP 56 1_555 E MG MG . A MG 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc7 A O HIS 299 A HIS 299 1_555 C K K . A K 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc8 A O GLY 301 A GLY 301 1_555 C K K . A K 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc9 A OG SER 303 A SER 303 1_555 C K K . A K 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc10 A OD2 ASP 304 A ASP 304 1_555 E MG MG . A MG 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc11 E MG MG . A MG 361 1_555 F O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc12 E MG MG . A MG 361 1_555 F O HOH . A HOH 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     3HFW 
_atom_sites.fract_transf_matrix[1][1]    0.022085 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018943 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007126 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 358 1 ADP ADP . 
C 3 K A 1 359 1 K K . 
D 4 CL A 1 360 2 CL CL . 
E 5 MG A 1 361 3 MG MG . 
F 6 HOH A 1 362 2 HOH HOH . 
F 6 HOH A 2 363 3 HOH HOH . 
F 6 HOH A 3 364 4 HOH HOH . 
F 6 HOH A 4 365 5 HOH HOH . 
F 6 HOH A 5 366 6 HOH HOH . 
F 6 HOH A 6 367 7 HOH HOH . 
F 6 HOH A 7 368 8 HOH HOH . 
F 6 HOH A 8 369 10 HOH HOH . 
F 6 HOH A 9 370 11 HOH HOH . 
F 6 HOH A 10 371 13 HOH HOH . 
F 6 HOH A 11 372 14 HOH HOH . 
F 6 HOH A 12 373 15 HOH HOH . 
F 6 HOH A 13 374 16 HOH HOH . 
F 6 HOH A 14 375 17 HOH HOH . 
F 6 HOH A 15 376 19 HOH HOH . 
F 6 HOH A 16 377 21 HOH HOH . 
F 6 HOH A 17 378 22 HOH HOH . 
F 6 HOH A 18 379 23 HOH HOH . 
F 6 HOH A 19 380 24 HOH HOH . 
F 6 HOH A 20 381 26 HOH HOH . 
F 6 HOH A 21 382 29 HOH HOH . 
F 6 HOH A 22 383 31 HOH HOH . 
F 6 HOH A 23 384 33 HOH HOH . 
F 6 HOH A 24 385 34 HOH HOH . 
F 6 HOH A 25 386 35 HOH HOH . 
F 6 HOH A 26 387 36 HOH HOH . 
F 6 HOH A 27 388 37 HOH HOH . 
F 6 HOH A 28 389 38 HOH HOH . 
F 6 HOH A 29 390 39 HOH HOH . 
F 6 HOH A 30 391 41 HOH HOH . 
F 6 HOH A 31 392 42 HOH HOH . 
F 6 HOH A 32 393 43 HOH HOH . 
F 6 HOH A 33 394 47 HOH HOH . 
F 6 HOH A 34 395 49 HOH HOH . 
F 6 HOH A 35 396 50 HOH HOH . 
F 6 HOH A 36 397 53 HOH HOH . 
F 6 HOH A 37 398 54 HOH HOH . 
F 6 HOH A 38 399 55 HOH HOH . 
F 6 HOH A 39 400 56 HOH HOH . 
F 6 HOH A 40 401 57 HOH HOH . 
F 6 HOH A 41 402 59 HOH HOH . 
F 6 HOH A 42 403 60 HOH HOH . 
F 6 HOH A 43 404 61 HOH HOH . 
F 6 HOH A 44 405 62 HOH HOH . 
F 6 HOH A 45 406 63 HOH HOH . 
F 6 HOH A 46 407 64 HOH HOH . 
F 6 HOH A 47 408 65 HOH HOH . 
F 6 HOH A 48 409 66 HOH HOH . 
F 6 HOH A 49 410 67 HOH HOH . 
F 6 HOH A 50 411 68 HOH HOH . 
F 6 HOH A 51 412 70 HOH HOH . 
F 6 HOH A 52 413 71 HOH HOH . 
F 6 HOH A 53 414 73 HOH HOH . 
F 6 HOH A 54 415 74 HOH HOH . 
F 6 HOH A 55 416 76 HOH HOH . 
F 6 HOH A 56 417 77 HOH HOH . 
F 6 HOH A 57 418 78 HOH HOH . 
F 6 HOH A 58 419 81 HOH HOH . 
F 6 HOH A 59 420 82 HOH HOH . 
F 6 HOH A 60 421 83 HOH HOH . 
F 6 HOH A 61 422 84 HOH HOH . 
F 6 HOH A 62 423 85 HOH HOH . 
F 6 HOH A 63 424 86 HOH HOH . 
F 6 HOH A 64 425 88 HOH HOH . 
F 6 HOH A 65 426 89 HOH HOH . 
F 6 HOH A 66 427 91 HOH HOH . 
F 6 HOH A 67 428 92 HOH HOH . 
F 6 HOH A 68 429 95 HOH HOH . 
F 6 HOH A 69 430 97 HOH HOH . 
F 6 HOH A 70 431 98 HOH HOH . 
F 6 HOH A 71 432 100 HOH HOH . 
F 6 HOH A 72 433 109 HOH HOH . 
F 6 HOH A 73 434 110 HOH HOH . 
F 6 HOH A 74 435 112 HOH HOH . 
F 6 HOH A 75 436 113 HOH HOH . 
F 6 HOH A 76 437 117 HOH HOH . 
F 6 HOH A 77 438 118 HOH HOH . 
F 6 HOH A 78 439 119 HOH HOH . 
F 6 HOH A 79 440 120 HOH HOH . 
F 6 HOH A 80 441 121 HOH HOH . 
F 6 HOH A 81 442 122 HOH HOH . 
F 6 HOH A 82 443 123 HOH HOH . 
F 6 HOH A 83 444 124 HOH HOH . 
F 6 HOH A 84 445 125 HOH HOH . 
F 6 HOH A 85 446 128 HOH HOH . 
F 6 HOH A 86 447 130 HOH HOH . 
F 6 HOH A 87 448 131 HOH HOH . 
F 6 HOH A 88 449 132 HOH HOH . 
F 6 HOH A 89 450 134 HOH HOH . 
F 6 HOH A 90 451 135 HOH HOH . 
F 6 HOH A 91 452 137 HOH HOH . 
F 6 HOH A 92 453 139 HOH HOH . 
F 6 HOH A 93 454 140 HOH HOH . 
F 6 HOH A 94 455 141 HOH HOH . 
F 6 HOH A 95 456 143 HOH HOH . 
F 6 HOH A 96 457 147 HOH HOH . 
F 6 HOH A 97 458 148 HOH HOH . 
F 6 HOH A 98 459 152 HOH HOH . 
F 6 HOH A 99 460 154 HOH HOH . 
F 6 HOH A 100 461 155 HOH HOH . 
F 6 HOH A 101 462 156 HOH HOH . 
F 6 HOH A 102 463 159 HOH HOH . 
F 6 HOH A 103 464 160 HOH HOH . 
F 6 HOH A 104 465 162 HOH HOH . 
F 6 HOH A 105 466 173 HOH HOH . 
F 6 HOH A 106 467 178 HOH HOH . 
F 6 HOH A 107 468 200 HOH HOH . 
F 6 HOH A 108 469 208 HOH HOH . 
F 6 HOH A 109 470 210 HOH HOH . 
F 6 HOH A 110 471 212 HOH HOH . 
F 6 HOH A 111 472 214 HOH HOH . 
F 6 HOH A 112 473 215 HOH HOH . 
F 6 HOH A 113 474 217 HOH HOH . 
F 6 HOH A 114 475 222 HOH HOH . 
F 6 HOH A 115 476 223 HOH HOH . 
F 6 HOH A 116 477 228 HOH HOH . 
F 6 HOH A 117 478 229 HOH HOH . 
F 6 HOH A 118 479 231 HOH HOH . 
F 6 HOH A 119 480 232 HOH HOH . 
F 6 HOH A 120 481 233 HOH HOH . 
F 6 HOH A 121 482 235 HOH HOH . 
F 6 HOH A 122 483 238 HOH HOH . 
F 6 HOH A 123 484 239 HOH HOH . 
F 6 HOH A 124 485 240 HOH HOH . 
F 6 HOH A 125 486 241 HOH HOH . 
F 6 HOH A 126 487 242 HOH HOH . 
F 6 HOH A 127 488 243 HOH HOH . 
F 6 HOH A 128 489 244 HOH HOH . 
F 6 HOH A 129 490 245 HOH HOH . 
F 6 HOH A 130 491 246 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 20.248 13.692 7.533 1 29.22 ? PB ADP 358 A 1 
HETATM 2 O O1B ADP . . . B 2 20.035 12.26 7.855 1 37.64 ? O1B ADP 358 A 1 
HETATM 3 O O2B ADP . . . B 2 21.354 13.84 6.457 1 23.93 ? O2B ADP 358 A 1 
HETATM 4 O O3B ADP . . . B 2 20.439 14.501 8.79 1 18.17 ? O3B ADP 358 A 1 
HETATM 5 P PA ADP . . . B 2 17.739 12.801 7.249 1 48.34 ? PA ADP 358 A 1 
HETATM 6 O O1A ADP . . . B 2 16.8 12.496 6.116 1 36.54 ? O1A ADP 358 A 1 
HETATM 7 O O2A ADP . . . B 2 18.187 11.522 7.95 1 45.96 ? O2A ADP 358 A 1 
HETATM 8 O O3A ADP . . . B 2 18.793 14.007 6.872 1 35.87 ? O3A ADP 358 A 1 
HETATM 9 O O5' ADP . . . B 2 17.062 13.6 8.483 1 37.14 ? O5' ADP 358 A 1 
HETATM 10 C C5' ADP . . . B 2 15.733 13.234 8.699 1 32.21 ? C5' ADP 358 A 1 
HETATM 11 C C4' ADP . . . B 2 15.347 13.772 10.031 1 25.93 ? C4' ADP 358 A 1 
HETATM 12 O O4' ADP . . . B 2 15.656 15.171 10.121 1 19.81 ? O4' ADP 358 A 1 
HETATM 13 C C3' ADP . . . B 2 13.843 13.606 10.143 1 29.65 ? C3' ADP 358 A 1 
HETATM 14 O O3' ADP . . . B 2 13.555 12.513 11.017 1 30.05 ? O3' ADP 358 A 1 
HETATM 15 C C2' ADP . . . B 2 13.396 14.917 10.757 1 29.43 ? C2' ADP 358 A 1 
HETATM 16 O O2' ADP . . . B 2 12.802 14.654 12.02 1 34.63 ? O2' ADP 358 A 1 
HETATM 17 C C1' ADP . . . B 2 14.688 15.697 10.991 1 24.71 ? C1' ADP 358 A 1 
HETATM 18 N N9 ADP . . . B 2 14.477 17.102 10.714 1 23.73 ? N9 ADP 358 A 1 
HETATM 19 C C8 ADP . . . B 2 14.222 17.679 9.518 1 28.15 ? C8 ADP 358 A 1 
HETATM 20 N N7 ADP . . . B 2 14.089 19.015 9.68 1 25.75 ? N7 ADP 358 A 1 
HETATM 21 C C5 ADP . . . B 2 14.259 19.277 10.988 1 20.86 ? C5 ADP 358 A 1 
HETATM 22 C C6 ADP . . . B 2 14.246 20.46 11.858 1 22.61 ? C6 ADP 358 A 1 
HETATM 23 N N6 ADP . . . B 2 13.996 21.704 11.397 1 21.31 ? N6 ADP 358 A 1 
HETATM 24 N N1 ADP . . . B 2 14.472 20.261 13.151 1 18.61 ? N1 ADP 358 A 1 
HETATM 25 C C2 ADP . . . B 2 14.702 19.043 13.703 1 21.72 ? C2 ADP 358 A 1 
HETATM 26 N N3 ADP . . . B 2 14.738 17.931 12.975 1 16.8 ? N3 ADP 358 A 1 
HETATM 27 C C4 ADP . . . B 2 14.516 17.998 11.659 1 16.84 ? C4 ADP 358 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           27 
#