data_3HFX # _model_server_result.job_id O7YhFxDY4BiKhHo1rlS_0A _model_server_result.datetime_utc '2024-11-09 02:41:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":602}' # _entry.id 3HFX # _exptl.entry_id 3HFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.207 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARNITINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3HFX _cell.length_a 134.21 _cell.length_b 134.21 _cell.length_c 85 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 134.21 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 67.105 116.229269 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 26 A CYS 26 1_555 E HG HG . A HG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc2 A O SER 101 A SER 101 1_555 C HG HG . A HG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc3 A O MET 204 A MET 204 1_555 F HG HG . A HG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc4 A O LEU 214 A LEU 214 1_555 G HG HG . A HG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc5 A SG CYS 218 A CYS 218 1_555 G HG HG . A HG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc6 A SG CYS 238 A CYS 238 1_555 D HG HG . A HG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc7 A O CYS 238 A CYS 238 1_555 D HG HG . A HG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc8 A O LEU 251 A LEU 251 1_555 I HG HG . A HG 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc9 A SG CYS 481 A CYS 481 1_555 B HG HG . A HG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? # _chem_comp.formula 'C7 H16 N O3 1' _chem_comp.formula_weight 162.207 _chem_comp.id 152 _chem_comp.mon_nstd_flag . _chem_comp.name CARNITINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3-CARBOXY-2-(R)-HYDROXY-PROPYL)-TRIMETHYL-AMMONIUM # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A 152 doub 1 n n C1 O1B 152 sing 2 n n C1 C2 152 sing 3 n n O1B H1B 152 sing 4 n n C2 C3 152 sing 5 n n C2 H21 152 sing 6 n n C2 H22 152 sing 7 n n C3 O3 152 sing 8 n n C3 C4 152 sing 9 n n C3 H3 152 sing 10 n n O3 HO3 152 sing 11 n n C4 N5 152 sing 12 n n C4 H41 152 sing 13 n n C4 H42 152 sing 14 n n N5 C5A 152 sing 15 n n N5 C5B 152 sing 16 n n N5 C5C 152 sing 17 n n C5A H5A1 152 sing 18 n n C5A H5A2 152 sing 19 n n C5A H5A3 152 sing 20 n n C5B H5B1 152 sing 21 n n C5B H5B2 152 sing 22 n n C5B H5B3 152 sing 23 n n C5C H5C1 152 sing 24 n n C5C H5C2 152 sing 25 n n C5C H5C3 152 sing 26 n n # _atom_sites.entry_id 3HFX _atom_sites.fract_transf_matrix[1][1] 0.007451 _atom_sites.fract_transf_matrix[1][2] 0.004302 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HG A 1 505 505 HG HG . C 2 HG A 1 506 506 HG HG . D 2 HG A 1 507 507 HG HG . E 2 HG A 1 508 508 HG HG . F 2 HG A 1 509 509 HG HG . G 2 HG A 1 510 510 HG HG . H 2 HG A 1 511 511 HG HG . I 2 HG A 1 512 512 HG HG . J 2 HG A 1 513 513 HG HG . K 3 152 A 1 601 601 152 152 . L 3 152 A 1 602 602 152 152 . M 3 152 A 1 603 603 152 152 . N 3 152 A 1 604 604 152 152 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 152 . . . L 3 38.838 21.289 32.895 1 62.26 ? C1 152 602 A 1 HETATM 2 O O1A 152 . . . L 3 39.491 20.467 33.589 1 62.24 ? O1A 152 602 A 1 HETATM 3 O O1B 152 . . . L 3 37.586 21.206 32.771 1 62.76 ? O1B 152 602 A 1 HETATM 4 C C2 152 . . . L 3 39.6 22.417 32.19 1 61.95 ? C2 152 602 A 1 HETATM 5 C C3 152 . . . L 3 38.7 23.085 31.141 1 62.99 ? C3 152 602 A 1 HETATM 6 O O3 152 . . . L 3 39.272 24.315 30.755 1 62.97 ? O3 152 602 A 1 HETATM 7 C C4 152 . . . L 3 38.517 22.149 29.931 1 62.7 ? C4 152 602 A 1 HETATM 8 N N5 152 . . . L 3 38.217 22.897 28.711 1 63.09 ? N5 152 602 A 1 HETATM 9 C C5A 152 . . . L 3 37.262 23.951 29.041 1 62.89 ? C5A 152 602 A 1 HETATM 10 C C5B 152 . . . L 3 39.463 23.456 28.202 1 61.24 ? C5B 152 602 A 1 HETATM 11 C C5C 152 . . . L 3 37.655 22.051 27.663 1 62.73 ? C5C 152 602 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 11 #