data_3HG1 # _model_server_result.job_id ICu60baAnnA_4AokKsyzsw _model_server_result.datetime_utc '2024-11-02 07:21:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hg1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 3HG1 # _exptl.entry_id 3HG1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HG1 _cell.length_a 120.898 _cell.length_b 120.898 _cell.length_c 81.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HG1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 D SG CYS 22 D CYS 23 1_555 D SG CYS 88 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 D SG CYS 131 D CYS 132 1_555 D SG CYS 181 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf6 D SG CYS 156 D CYS 157 1_555 E SG CYS 171 E CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 E SG CYS 23 E CYS 23 1_555 E SG CYS 91 E CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf8 E SG CYS 145 E CYS 145 1_555 E SG CYS 210 E CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 3HG1 _atom_sites.fract_transf_matrix[1][1] 0.008271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 GOL A 1 801 801 GOL GOL . G 7 SO4 A 1 803 803 SO4 SO4 . H 7 SO4 A 1 804 804 SO4 SO4 . I 6 GOL E 1 802 802 GOL GOL . J 8 HOH A 1 902 902 HOH HOH . J 8 HOH A 2 903 903 HOH HOH . J 8 HOH A 3 907 907 HOH HOH . J 8 HOH A 4 911 911 HOH HOH . J 8 HOH A 5 916 916 HOH HOH . J 8 HOH A 6 918 918 HOH HOH . J 8 HOH A 7 921 921 HOH HOH . J 8 HOH A 8 924 924 HOH HOH . J 8 HOH A 9 928 928 HOH HOH . J 8 HOH A 10 933 933 HOH HOH . J 8 HOH A 11 934 934 HOH HOH . J 8 HOH A 12 935 935 HOH HOH . J 8 HOH A 13 936 936 HOH HOH . J 8 HOH A 14 937 937 HOH HOH . J 8 HOH A 15 938 938 HOH HOH . J 8 HOH A 16 943 943 HOH HOH . J 8 HOH A 17 944 944 HOH HOH . K 8 HOH B 1 906 906 HOH HOH . K 8 HOH B 2 925 925 HOH HOH . K 8 HOH B 3 926 926 HOH HOH . K 8 HOH B 4 927 927 HOH HOH . K 8 HOH B 5 940 940 HOH HOH . K 8 HOH B 6 941 941 HOH HOH . L 8 HOH C 1 929 929 HOH HOH . M 8 HOH D 1 901 901 HOH HOH . M 8 HOH D 2 908 908 HOH HOH . M 8 HOH D 3 910 910 HOH HOH . M 8 HOH D 4 912 912 HOH HOH . M 8 HOH D 5 913 913 HOH HOH . M 8 HOH D 6 919 919 HOH HOH . M 8 HOH D 7 920 920 HOH HOH . M 8 HOH D 8 932 932 HOH HOH . N 8 HOH E 1 904 904 HOH HOH . N 8 HOH E 2 905 905 HOH HOH . N 8 HOH E 3 909 909 HOH HOH . N 8 HOH E 4 914 914 HOH HOH . N 8 HOH E 5 915 915 HOH HOH . N 8 HOH E 6 917 917 HOH HOH . N 8 HOH E 7 922 922 HOH HOH . N 8 HOH E 8 923 923 HOH HOH . N 8 HOH E 9 930 930 HOH HOH . N 8 HOH E 10 931 931 HOH HOH . N 8 HOH E 11 939 939 HOH HOH . N 8 HOH E 12 942 942 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 6 57.188 -25.903 44.015 1 79.53 ? C1 GOL 801 A 1 HETATM 2 O O1 GOL . . . F 6 58.235 -26.328 43.201 1 71.08 ? O1 GOL 801 A 1 HETATM 3 C C2 GOL . . . F 6 56.154 -26.994 43.894 1 82.55 ? C2 GOL 801 A 1 HETATM 4 O O2 GOL . . . F 6 56.301 -27.556 42.618 1 81.93 ? O2 GOL 801 A 1 HETATM 5 C C3 GOL . . . F 6 54.755 -26.437 44.092 1 81.31 ? C3 GOL 801 A 1 HETATM 6 O O3 GOL . . . F 6 53.827 -27.486 44.043 1 77.57 ? O3 GOL 801 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #