data_3HG6 # _model_server_result.job_id rAN-CNp1PItkrcQ19gleJQ _model_server_result.datetime_utc '2024-10-25 20:26:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hg6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":109}' # _entry.id 3HG6 # _exptl.entry_id 3HG6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HG6 _cell.length_a 32.516 _cell.length_b 39.799 _cell.length_c 68.536 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HG6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 19 1_555 A SG CYS 68 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 75 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 A SG CYS 48 A CYS 48 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 A SG CYS 87 A CYS 87 1_555 A SG CYS 104 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N ASP 2 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3HG6 _atom_sites.fract_transf_matrix[1][1] 0.030754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014591 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 105 1 SO4 SO4 . C 2 SO4 A 1 106 2 SO4 SO4 . D 2 SO4 A 1 107 3 SO4 SO4 . E 2 SO4 A 1 108 4 SO4 SO4 . F 3 GOL A 1 109 1 GOL GOL . G 4 HOH A 1 110 1 HOH HOH . G 4 HOH A 2 111 2 HOH HOH . G 4 HOH A 3 112 3 HOH HOH . G 4 HOH A 4 113 4 HOH HOH . G 4 HOH A 5 114 5 HOH HOH . G 4 HOH A 6 115 6 HOH HOH . G 4 HOH A 7 116 7 HOH HOH . G 4 HOH A 8 117 8 HOH HOH . G 4 HOH A 9 118 9 HOH HOH . G 4 HOH A 10 119 10 HOH HOH . G 4 HOH A 11 120 11 HOH HOH . G 4 HOH A 12 121 12 HOH HOH . G 4 HOH A 13 122 13 HOH HOH . G 4 HOH A 14 123 14 HOH HOH . G 4 HOH A 15 124 15 HOH HOH . G 4 HOH A 16 125 16 HOH HOH . G 4 HOH A 17 126 17 HOH HOH . G 4 HOH A 18 127 18 HOH HOH . G 4 HOH A 19 128 19 HOH HOH . G 4 HOH A 20 129 20 HOH HOH . G 4 HOH A 21 130 21 HOH HOH . G 4 HOH A 22 131 22 HOH HOH . G 4 HOH A 23 132 23 HOH HOH . G 4 HOH A 24 133 24 HOH HOH . G 4 HOH A 25 134 25 HOH HOH . G 4 HOH A 26 135 26 HOH HOH . G 4 HOH A 27 136 27 HOH HOH . G 4 HOH A 28 137 28 HOH HOH . G 4 HOH A 29 138 29 HOH HOH . G 4 HOH A 30 139 30 HOH HOH . G 4 HOH A 31 140 31 HOH HOH . G 4 HOH A 32 141 32 HOH HOH . G 4 HOH A 33 142 33 HOH HOH . G 4 HOH A 34 143 34 HOH HOH . G 4 HOH A 35 144 35 HOH HOH . G 4 HOH A 36 145 36 HOH HOH . G 4 HOH A 37 146 37 HOH HOH . G 4 HOH A 38 147 38 HOH HOH . G 4 HOH A 39 148 39 HOH HOH . G 4 HOH A 40 149 40 HOH HOH . G 4 HOH A 41 150 41 HOH HOH . G 4 HOH A 42 151 42 HOH HOH . G 4 HOH A 43 152 43 HOH HOH . G 4 HOH A 44 153 44 HOH HOH . G 4 HOH A 45 154 45 HOH HOH . G 4 HOH A 46 155 46 HOH HOH . G 4 HOH A 47 156 47 HOH HOH . G 4 HOH A 48 157 48 HOH HOH . G 4 HOH A 49 158 49 HOH HOH . G 4 HOH A 50 159 50 HOH HOH . G 4 HOH A 51 160 51 HOH HOH . G 4 HOH A 52 161 52 HOH HOH . G 4 HOH A 53 162 53 HOH HOH . G 4 HOH A 54 163 54 HOH HOH . G 4 HOH A 55 164 55 HOH HOH . G 4 HOH A 56 165 56 HOH HOH . G 4 HOH A 57 166 57 HOH HOH . G 4 HOH A 58 167 58 HOH HOH . G 4 HOH A 59 168 59 HOH HOH . G 4 HOH A 60 169 60 HOH HOH . G 4 HOH A 61 170 61 HOH HOH . G 4 HOH A 62 171 62 HOH HOH . G 4 HOH A 63 172 63 HOH HOH . G 4 HOH A 64 173 64 HOH HOH . G 4 HOH A 65 174 65 HOH HOH . G 4 HOH A 66 175 66 HOH HOH . G 4 HOH A 67 176 67 HOH HOH . G 4 HOH A 68 177 68 HOH HOH . G 4 HOH A 69 178 69 HOH HOH . G 4 HOH A 70 179 70 HOH HOH . G 4 HOH A 71 180 71 HOH HOH . G 4 HOH A 72 181 72 HOH HOH . G 4 HOH A 73 182 73 HOH HOH . G 4 HOH A 74 183 74 HOH HOH . G 4 HOH A 75 184 75 HOH HOH . G 4 HOH A 76 185 76 HOH HOH . G 4 HOH A 77 186 77 HOH HOH . G 4 HOH A 78 187 78 HOH HOH . G 4 HOH A 79 188 79 HOH HOH . G 4 HOH A 80 189 80 HOH HOH . G 4 HOH A 81 190 81 HOH HOH . G 4 HOH A 82 191 82 HOH HOH . G 4 HOH A 83 192 83 HOH HOH . G 4 HOH A 84 193 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 22.182 -2.05 -3.808 1 49.06 ? C1 GOL 109 A 1 HETATM 2 O O1 GOL . . . F 3 21.85 -1.234 -2.707 1 47.35 ? O1 GOL 109 A 1 HETATM 3 C C2 GOL . . . F 3 21.647 -3.478 -3.7 1 49.45 ? C2 GOL 109 A 1 HETATM 4 O O2 GOL . . . F 3 20.243 -3.397 -3.53 1 48.57 ? O2 GOL 109 A 1 HETATM 5 C C3 GOL . . . F 3 22.418 -4.273 -2.634 1 46.73 ? C3 GOL 109 A 1 HETATM 6 O O3 GOL . . . F 3 22.621 -5.636 -2.931 1 33.67 ? O3 GOL 109 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #