data_3HGI # _model_server_result.job_id h6Fv5YXeBAuKnLGyajdNWQ _model_server_result.datetime_utc '2024-11-01 19:37:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":284}' # _entry.id 3HGI # _exptl.entry_id 3HGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.121 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.21 _cell.angle_gamma 90 _cell.entry_id 3HGI _cell.length_a 89.794 _cell.length_b 38.118 _cell.length_c 76.065 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -5.584104 0 75.859752 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 162 A TYR 162 1_555 B FE FE . A FE 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? metalc ? metalc2 A OH TYR 196 A TYR 196 1_555 B FE FE . A FE 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 A NE2 HIS 220 A HIS 220 1_555 B FE FE . A FE 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc4 A NE2 HIS 222 A HIS 222 1_555 B FE FE . A FE 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc5 B FE FE . A FE 281 1_555 C O2 CO3 . A CO3 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc6 B FE FE . A FE 281 1_555 E O1 BEZ . A BEZ 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.706 ? metalc ? metalc7 B FE FE . A FE 281 1_555 E O2 BEZ . A BEZ 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? # _chem_comp.formula 'C7 H6 O2' _chem_comp.formula_weight 122.121 _chem_comp.id BEZ _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BEZ doub 206 n n C O2 BEZ sing 207 n n C C1 BEZ sing 208 n n O2 HO2 BEZ sing 209 n n C1 C2 BEZ doub 210 n y C1 C6 BEZ sing 211 n y C2 C3 BEZ sing 212 n y C2 H2 BEZ sing 213 n n C3 C4 BEZ doub 214 n y C3 H3 BEZ sing 215 n n C4 C5 BEZ sing 216 n y C4 H4 BEZ sing 217 n n C5 C6 BEZ doub 218 n y C5 H5 BEZ sing 219 n n C6 H6 BEZ sing 220 n n # _atom_sites.entry_id 3HGI _atom_sites.fract_transf_matrix[1][1] 0.011137 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000819 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 281 281 FE FE . C 3 CO3 A 1 282 282 CO3 CO3 . D 4 6PL A 1 283 283 6PL 6PL . E 5 BEZ A 1 284 284 BEZ BEZ . F 6 HOH A 1 285 285 HOH HOH . F 6 HOH A 2 286 286 HOH HOH . F 6 HOH A 3 287 287 HOH HOH . F 6 HOH A 4 288 288 HOH HOH . F 6 HOH A 5 289 289 HOH HOH . F 6 HOH A 6 290 290 HOH HOH . F 6 HOH A 7 291 291 HOH HOH . F 6 HOH A 8 292 292 HOH HOH . F 6 HOH A 9 293 293 HOH HOH . F 6 HOH A 10 294 294 HOH HOH . F 6 HOH A 11 295 295 HOH HOH . F 6 HOH A 12 296 296 HOH HOH . F 6 HOH A 13 297 297 HOH HOH . F 6 HOH A 14 298 298 HOH HOH . F 6 HOH A 15 299 299 HOH HOH . F 6 HOH A 16 300 300 HOH HOH . F 6 HOH A 17 301 301 HOH HOH . F 6 HOH A 18 302 302 HOH HOH . F 6 HOH A 19 303 303 HOH HOH . F 6 HOH A 20 304 304 HOH HOH . F 6 HOH A 21 305 305 HOH HOH . F 6 HOH A 22 306 306 HOH HOH . F 6 HOH A 23 307 307 HOH HOH . F 6 HOH A 24 308 308 HOH HOH . F 6 HOH A 25 309 309 HOH HOH . F 6 HOH A 26 310 310 HOH HOH . F 6 HOH A 27 311 311 HOH HOH . F 6 HOH A 28 312 312 HOH HOH . F 6 HOH A 29 313 313 HOH HOH . F 6 HOH A 30 314 314 HOH HOH . F 6 HOH A 31 315 315 HOH HOH . F 6 HOH A 32 316 316 HOH HOH . F 6 HOH A 33 317 317 HOH HOH . F 6 HOH A 34 318 318 HOH HOH . F 6 HOH A 35 319 319 HOH HOH . F 6 HOH A 36 320 320 HOH HOH . F 6 HOH A 37 321 321 HOH HOH . F 6 HOH A 38 322 322 HOH HOH . F 6 HOH A 39 323 323 HOH HOH . F 6 HOH A 40 324 324 HOH HOH . F 6 HOH A 41 325 325 HOH HOH . F 6 HOH A 42 326 326 HOH HOH . F 6 HOH A 43 327 327 HOH HOH . F 6 HOH A 44 328 328 HOH HOH . F 6 HOH A 45 329 329 HOH HOH . F 6 HOH A 46 330 330 HOH HOH . F 6 HOH A 47 331 331 HOH HOH . F 6 HOH A 48 332 332 HOH HOH . F 6 HOH A 49 333 333 HOH HOH . F 6 HOH A 50 334 334 HOH HOH . F 6 HOH A 51 335 335 HOH HOH . F 6 HOH A 52 336 336 HOH HOH . F 6 HOH A 53 337 337 HOH HOH . F 6 HOH A 54 338 338 HOH HOH . F 6 HOH A 55 339 339 HOH HOH . F 6 HOH A 56 340 340 HOH HOH . F 6 HOH A 57 341 341 HOH HOH . F 6 HOH A 58 342 342 HOH HOH . F 6 HOH A 59 343 343 HOH HOH . F 6 HOH A 60 344 344 HOH HOH . F 6 HOH A 61 345 345 HOH HOH . F 6 HOH A 62 346 346 HOH HOH . F 6 HOH A 63 347 347 HOH HOH . F 6 HOH A 64 348 348 HOH HOH . F 6 HOH A 65 349 349 HOH HOH . F 6 HOH A 66 350 350 HOH HOH . F 6 HOH A 67 351 351 HOH HOH . F 6 HOH A 68 352 352 HOH HOH . F 6 HOH A 69 353 353 HOH HOH . F 6 HOH A 70 354 354 HOH HOH . F 6 HOH A 71 355 355 HOH HOH . F 6 HOH A 72 356 356 HOH HOH . F 6 HOH A 73 357 357 HOH HOH . F 6 HOH A 74 358 358 HOH HOH . F 6 HOH A 75 359 359 HOH HOH . F 6 HOH A 76 360 360 HOH HOH . F 6 HOH A 77 361 361 HOH HOH . F 6 HOH A 78 362 362 HOH HOH . F 6 HOH A 79 363 363 HOH HOH . F 6 HOH A 80 364 364 HOH HOH . F 6 HOH A 81 365 365 HOH HOH . F 6 HOH A 82 366 366 HOH HOH . F 6 HOH A 83 367 367 HOH HOH . F 6 HOH A 84 368 368 HOH HOH . F 6 HOH A 85 369 369 HOH HOH . F 6 HOH A 86 370 370 HOH HOH . F 6 HOH A 87 371 371 HOH HOH . F 6 HOH A 88 372 372 HOH HOH . F 6 HOH A 89 373 373 HOH HOH . F 6 HOH A 90 374 374 HOH HOH . F 6 HOH A 91 375 375 HOH HOH . F 6 HOH A 92 376 376 HOH HOH . F 6 HOH A 93 377 377 HOH HOH . F 6 HOH A 94 378 378 HOH HOH . F 6 HOH A 95 379 379 HOH HOH . F 6 HOH A 96 380 380 HOH HOH . F 6 HOH A 97 381 381 HOH HOH . F 6 HOH A 98 382 382 HOH HOH . F 6 HOH A 99 383 383 HOH HOH . F 6 HOH A 100 384 384 HOH HOH . F 6 HOH A 101 385 385 HOH HOH . F 6 HOH A 102 386 386 HOH HOH . F 6 HOH A 103 387 387 HOH HOH . F 6 HOH A 104 388 388 HOH HOH . F 6 HOH A 105 389 389 HOH HOH . F 6 HOH A 106 390 390 HOH HOH . F 6 HOH A 107 391 391 HOH HOH . F 6 HOH A 108 392 392 HOH HOH . F 6 HOH A 109 393 393 HOH HOH . F 6 HOH A 110 394 394 HOH HOH . F 6 HOH A 111 395 395 HOH HOH . F 6 HOH A 112 396 396 HOH HOH . F 6 HOH A 113 397 397 HOH HOH . F 6 HOH A 114 398 398 HOH HOH . F 6 HOH A 115 399 399 HOH HOH . F 6 HOH A 116 400 400 HOH HOH . F 6 HOH A 117 401 401 HOH HOH . F 6 HOH A 118 402 402 HOH HOH . F 6 HOH A 119 403 403 HOH HOH . F 6 HOH A 120 404 404 HOH HOH . F 6 HOH A 121 405 405 HOH HOH . F 6 HOH A 122 406 406 HOH HOH . F 6 HOH A 123 407 407 HOH HOH . F 6 HOH A 124 408 408 HOH HOH . F 6 HOH A 125 409 409 HOH HOH . F 6 HOH A 126 410 410 HOH HOH . F 6 HOH A 127 411 411 HOH HOH . F 6 HOH A 128 412 412 HOH HOH . F 6 HOH A 129 413 413 HOH HOH . F 6 HOH A 130 414 414 HOH HOH . F 6 HOH A 131 415 415 HOH HOH . F 6 HOH A 132 416 416 HOH HOH . F 6 HOH A 133 417 417 HOH HOH . F 6 HOH A 134 418 418 HOH HOH . F 6 HOH A 135 419 419 HOH HOH . F 6 HOH A 136 420 420 HOH HOH . F 6 HOH A 137 421 421 HOH HOH . F 6 HOH A 138 422 422 HOH HOH . F 6 HOH A 139 423 423 HOH HOH . F 6 HOH A 140 424 424 HOH HOH . F 6 HOH A 141 425 425 HOH HOH . F 6 HOH A 142 426 426 HOH HOH . F 6 HOH A 143 427 427 HOH HOH . F 6 HOH A 144 428 428 HOH HOH . F 6 HOH A 145 429 429 HOH HOH . F 6 HOH A 146 430 430 HOH HOH . F 6 HOH A 147 431 431 HOH HOH . F 6 HOH A 148 432 432 HOH HOH . F 6 HOH A 149 433 433 HOH HOH . F 6 HOH A 150 434 434 HOH HOH . F 6 HOH A 151 435 435 HOH HOH . F 6 HOH A 152 436 436 HOH HOH . F 6 HOH A 153 437 437 HOH HOH . F 6 HOH A 154 438 438 HOH HOH . F 6 HOH A 155 439 439 HOH HOH . F 6 HOH A 156 440 440 HOH HOH . F 6 HOH A 157 441 441 HOH HOH . F 6 HOH A 158 442 442 HOH HOH . F 6 HOH A 159 443 443 HOH HOH . F 6 HOH A 160 444 444 HOH HOH . F 6 HOH A 161 445 445 HOH HOH . F 6 HOH A 162 446 446 HOH HOH . F 6 HOH A 163 447 447 HOH HOH . F 6 HOH A 164 448 448 HOH HOH . F 6 HOH A 165 449 449 HOH HOH . F 6 HOH A 166 450 450 HOH HOH . F 6 HOH A 167 451 451 HOH HOH . F 6 HOH A 168 452 452 HOH HOH . F 6 HOH A 169 453 453 HOH HOH . F 6 HOH A 170 454 454 HOH HOH . F 6 HOH A 171 455 455 HOH HOH . F 6 HOH A 172 456 456 HOH HOH . F 6 HOH A 173 457 457 HOH HOH . F 6 HOH A 174 458 458 HOH HOH . F 6 HOH A 175 459 459 HOH HOH . F 6 HOH A 176 460 460 HOH HOH . F 6 HOH A 177 461 461 HOH HOH . F 6 HOH A 178 462 462 HOH HOH . F 6 HOH A 179 463 463 HOH HOH . F 6 HOH A 180 464 464 HOH HOH . F 6 HOH A 181 465 465 HOH HOH . F 6 HOH A 182 466 466 HOH HOH . F 6 HOH A 183 467 467 HOH HOH . F 6 HOH A 184 468 468 HOH HOH . F 6 HOH A 185 469 469 HOH HOH . F 6 HOH A 186 470 470 HOH HOH . F 6 HOH A 187 471 471 HOH HOH . F 6 HOH A 188 472 472 HOH HOH . F 6 HOH A 189 473 473 HOH HOH . F 6 HOH A 190 474 474 HOH HOH . F 6 HOH A 191 475 475 HOH HOH . F 6 HOH A 192 476 476 HOH HOH . F 6 HOH A 193 477 477 HOH HOH . F 6 HOH A 194 478 478 HOH HOH . F 6 HOH A 195 479 479 HOH HOH . F 6 HOH A 196 480 480 HOH HOH . F 6 HOH A 197 481 481 HOH HOH . F 6 HOH A 198 482 482 HOH HOH . F 6 HOH A 199 483 483 HOH HOH . F 6 HOH A 200 484 484 HOH HOH . F 6 HOH A 201 485 485 HOH HOH . F 6 HOH A 202 486 486 HOH HOH . F 6 HOH A 203 487 487 HOH HOH . F 6 HOH A 204 488 488 HOH HOH . F 6 HOH A 205 489 489 HOH HOH . F 6 HOH A 206 490 490 HOH HOH . F 6 HOH A 207 491 491 HOH HOH . F 6 HOH A 208 492 492 HOH HOH . F 6 HOH A 209 493 493 HOH HOH . F 6 HOH A 210 494 494 HOH HOH . F 6 HOH A 211 495 495 HOH HOH . F 6 HOH A 212 496 496 HOH HOH . F 6 HOH A 213 497 497 HOH HOH . F 6 HOH A 214 498 498 HOH HOH . F 6 HOH A 215 499 499 HOH HOH . F 6 HOH A 216 500 500 HOH HOH . F 6 HOH A 217 501 501 HOH HOH . F 6 HOH A 218 503 503 HOH HOH . F 6 HOH A 219 504 504 HOH HOH . F 6 HOH A 220 505 505 HOH HOH . F 6 HOH A 221 506 506 HOH HOH . F 6 HOH A 222 508 508 HOH HOH . F 6 HOH A 223 509 509 HOH HOH . F 6 HOH A 224 510 510 HOH HOH . F 6 HOH A 225 511 511 HOH HOH . F 6 HOH A 226 512 512 HOH HOH . F 6 HOH A 227 513 513 HOH HOH . F 6 HOH A 228 514 514 HOH HOH . F 6 HOH A 229 515 515 HOH HOH . F 6 HOH A 230 516 516 HOH HOH . F 6 HOH A 231 517 517 HOH HOH . F 6 HOH A 232 518 518 HOH HOH . F 6 HOH A 233 519 519 HOH HOH . F 6 HOH A 234 520 520 HOH HOH . F 6 HOH A 235 521 521 HOH HOH . F 6 HOH A 236 522 522 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BEZ . . . E 5 4.448 -1.904 19.042 1 26.63 ? C BEZ 284 A 1 HETATM 2 O O1 BEZ . . . E 5 4.731 -3.089 18.336 1 28.65 ? O1 BEZ 284 A 1 HETATM 3 O O2 BEZ . . . E 5 4.962 -0.82 18.528 1 26.72 ? O2 BEZ 284 A 1 HETATM 4 C C1 BEZ . . . E 5 3.562 -1.839 20.255 1 27.42 ? C1 BEZ 284 A 1 HETATM 5 C C2 BEZ . . . E 5 2.557 -2.802 20.44 1 27.34 ? C2 BEZ 284 A 1 HETATM 6 C C3 BEZ . . . E 5 1.699 -2.7 21.558 1 27.29 ? C3 BEZ 284 A 1 HETATM 7 C C4 BEZ . . . E 5 1.842 -1.652 22.471 1 28.02 ? C4 BEZ 284 A 1 HETATM 8 C C5 BEZ . . . E 5 2.839 -0.675 22.261 1 26.98 ? C5 BEZ 284 A 1 HETATM 9 C C6 BEZ . . . E 5 3.68 -0.774 21.16 1 23.76 ? C6 BEZ 284 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 9 #