data_3HGX # _model_server_result.job_id YOwPmHpOuBJ6F9H1X-rHQw _model_server_result.datetime_utc '2024-12-31 09:05:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hgx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 3HGX # _exptl.entry_id 3HGX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.062 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRUVIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HGX _cell.length_a 48.015 _cell.length_b 53.15 _cell.length_c 82.336 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HGX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C3 H4 O3' _chem_comp.formula_weight 88.062 _chem_comp.id PYR _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRUVIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O PYR doub 277 n n C OXT PYR sing 278 n n C CA PYR sing 279 n n OXT HXT PYR sing 280 n n CA O3 PYR doub 281 n n CA CB PYR sing 282 n n CB HB1 PYR sing 283 n n CB HB2 PYR sing 284 n n CB HB3 PYR sing 285 n n # _atom_sites.entry_id 3HGX _atom_sites.fract_transf_matrix[1][1] 0.020827 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAL A 1 102 101 SAL SAL . D 3 PYR A 1 103 103 PYR PYR . E 3 PYR B 1 102 102 PYR PYR . F 2 SAL B 1 104 104 SAL SAL . G 4 HOH A 1 104 9 HOH HOH . G 4 HOH A 2 105 10 HOH HOH . G 4 HOH A 3 106 13 HOH HOH . G 4 HOH A 4 107 14 HOH HOH . G 4 HOH A 5 108 15 HOH HOH . G 4 HOH A 6 109 16 HOH HOH . G 4 HOH A 7 110 3 HOH HOH . G 4 HOH A 8 111 8 HOH HOH . H 4 HOH B 1 103 4 HOH HOH . H 4 HOH B 2 105 5 HOH HOH . H 4 HOH B 3 106 6 HOH HOH . H 4 HOH B 4 107 7 HOH HOH . H 4 HOH B 5 108 11 HOH HOH . H 4 HOH B 6 109 12 HOH HOH . H 4 HOH B 7 110 1 HOH HOH . H 4 HOH B 8 111 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C PYR . . . D 3 -29.404 2.973 -4.884 1 15.79 ? C PYR 103 A 1 HETATM 2 O O PYR . . . D 3 -29.202 2.308 -3.777 1 17.38 ? O PYR 103 A 1 HETATM 3 O OXT PYR . . . D 3 -30.264 3.966 -4.891 1 16.46 ? OXT PYR 103 A 1 HETATM 4 C CA PYR . . . D 3 -28.704 2.622 -6.038 1 14.98 ? CA PYR 103 A 1 HETATM 5 O O3 PYR . . . D 3 -29.086 3.07 -7.207 1 12.94 ? O3 PYR 103 A 1 HETATM 6 C CB PYR . . . D 3 -27.5 1.73 -5.942 1 13.74 ? CB PYR 103 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #