data_3HH3 # _model_server_result.job_id GZyQ8SG5biu8_WuKnjhPng _model_server_result.datetime_utc '2024-11-20 05:24:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hh3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":165}' # _entry.id 3HH3 # _exptl.entry_id 3HH3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-HYDROXYETHYL DISULFIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3HH3 _cell.length_a 59.904 _cell.length_b 59.904 _cell.length_c 95.443 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 11 A GLU 11 1_555 E NA NA . A NA 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc2 E NA NA . A NA 168 1_555 G O HOH . A HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc3 E NA NA . A NA 168 1_555 G O HOH . A HOH 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc4 E NA NA . A NA 168 1_555 G O HOH . A HOH 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id HED _chem_comp.mon_nstd_flag . _chem_comp.name '2-HYDROXYETHYL DISULFIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HED sing 141 n n C1 C2 HED sing 142 n n C1 H11 HED sing 143 n n C1 H12 HED sing 144 n n O1 HO1 HED sing 145 n n C2 S3 HED sing 146 n n C2 H21 HED sing 147 n n C2 H22 HED sing 148 n n S3 S4 HED sing 149 n n S4 C5 HED sing 150 n n C5 C6 HED sing 151 n n C5 H51 HED sing 152 n n C5 H52 HED sing 153 n n C6 O6 HED sing 154 n n C6 H61 HED sing 155 n n C6 H62 HED sing 156 n n O6 HO6 HED sing 157 n n # _atom_sites.entry_id 3HH3 _atom_sites.fract_transf_matrix[1][1] 0.016693 _atom_sites.fract_transf_matrix[1][2] 0.009638 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010477 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HED A 1 165 1 HED HED . C 2 HED A 1 166 2 HED HED . D 3 PO4 A 1 167 3 PO4 PO4 . E 4 NA A 1 168 4 NA NA . F 5 B20 A 1 169 1 B20 B20 . G 6 HOH A 1 170 170 HOH HOH . G 6 HOH A 2 171 171 HOH HOH . G 6 HOH A 3 172 172 HOH HOH . G 6 HOH A 4 173 173 HOH HOH . G 6 HOH A 5 174 174 HOH HOH . G 6 HOH A 6 175 175 HOH HOH . G 6 HOH A 7 176 176 HOH HOH . G 6 HOH A 8 177 177 HOH HOH . G 6 HOH A 9 178 178 HOH HOH . G 6 HOH A 10 179 179 HOH HOH . G 6 HOH A 11 180 180 HOH HOH . G 6 HOH A 12 181 181 HOH HOH . G 6 HOH A 13 182 182 HOH HOH . G 6 HOH A 14 183 183 HOH HOH . G 6 HOH A 15 184 184 HOH HOH . G 6 HOH A 16 185 185 HOH HOH . G 6 HOH A 17 186 186 HOH HOH . G 6 HOH A 18 187 187 HOH HOH . G 6 HOH A 19 188 188 HOH HOH . G 6 HOH A 20 189 189 HOH HOH . G 6 HOH A 21 190 190 HOH HOH . G 6 HOH A 22 191 191 HOH HOH . G 6 HOH A 23 192 192 HOH HOH . G 6 HOH A 24 193 193 HOH HOH . G 6 HOH A 25 194 194 HOH HOH . G 6 HOH A 26 195 195 HOH HOH . G 6 HOH A 27 196 196 HOH HOH . G 6 HOH A 28 197 197 HOH HOH . G 6 HOH A 29 198 198 HOH HOH . G 6 HOH A 30 199 199 HOH HOH . G 6 HOH A 31 200 200 HOH HOH . G 6 HOH A 32 201 201 HOH HOH . G 6 HOH A 33 202 202 HOH HOH . G 6 HOH A 34 203 203 HOH HOH . G 6 HOH A 35 204 204 HOH HOH . G 6 HOH A 36 205 205 HOH HOH . G 6 HOH A 37 206 206 HOH HOH . G 6 HOH A 38 207 207 HOH HOH . G 6 HOH A 39 208 208 HOH HOH . G 6 HOH A 40 209 209 HOH HOH . G 6 HOH A 41 210 210 HOH HOH . G 6 HOH A 42 211 211 HOH HOH . G 6 HOH A 43 212 212 HOH HOH . G 6 HOH A 44 213 213 HOH HOH . G 6 HOH A 45 214 214 HOH HOH . G 6 HOH A 46 215 215 HOH HOH . G 6 HOH A 47 216 216 HOH HOH . G 6 HOH A 48 217 217 HOH HOH . G 6 HOH A 49 218 218 HOH HOH . G 6 HOH A 50 219 219 HOH HOH . G 6 HOH A 51 220 220 HOH HOH . G 6 HOH A 52 221 221 HOH HOH . G 6 HOH A 53 222 222 HOH HOH . G 6 HOH A 54 223 223 HOH HOH . G 6 HOH A 55 224 224 HOH HOH . G 6 HOH A 56 225 225 HOH HOH . G 6 HOH A 57 226 226 HOH HOH . G 6 HOH A 58 227 227 HOH HOH . G 6 HOH A 59 228 228 HOH HOH . G 6 HOH A 60 229 229 HOH HOH . G 6 HOH A 61 230 230 HOH HOH . G 6 HOH A 62 231 231 HOH HOH . G 6 HOH A 63 232 232 HOH HOH . G 6 HOH A 64 233 233 HOH HOH . G 6 HOH A 65 234 234 HOH HOH . G 6 HOH A 66 235 235 HOH HOH . G 6 HOH A 67 236 236 HOH HOH . G 6 HOH A 68 237 237 HOH HOH . G 6 HOH A 69 238 238 HOH HOH . G 6 HOH A 70 239 239 HOH HOH . G 6 HOH A 71 240 240 HOH HOH . G 6 HOH A 72 241 241 HOH HOH . G 6 HOH A 73 242 242 HOH HOH . G 6 HOH A 74 243 243 HOH HOH . G 6 HOH A 75 244 244 HOH HOH . G 6 HOH A 76 245 245 HOH HOH . G 6 HOH A 77 246 246 HOH HOH . G 6 HOH A 78 247 247 HOH HOH . G 6 HOH A 79 248 1 HOH HOH . G 6 HOH A 80 249 2 HOH HOH . G 6 HOH A 81 250 3 HOH HOH . G 6 HOH A 82 251 4 HOH HOH . G 6 HOH A 83 252 5 HOH HOH . G 6 HOH A 84 253 6 HOH HOH . G 6 HOH A 85 254 7 HOH HOH . G 6 HOH A 86 255 8 HOH HOH . G 6 HOH A 87 256 9 HOH HOH . G 6 HOH A 88 257 10 HOH HOH . G 6 HOH A 89 258 11 HOH HOH . G 6 HOH A 90 259 12 HOH HOH . G 6 HOH A 91 260 13 HOH HOH . G 6 HOH A 92 261 14 HOH HOH . G 6 HOH A 93 262 15 HOH HOH . G 6 HOH A 94 263 16 HOH HOH . G 6 HOH A 95 264 17 HOH HOH . G 6 HOH A 96 265 18 HOH HOH . G 6 HOH A 97 266 19 HOH HOH . G 6 HOH A 98 267 20 HOH HOH . G 6 HOH A 99 268 21 HOH HOH . G 6 HOH A 100 269 22 HOH HOH . G 6 HOH A 101 270 23 HOH HOH . G 6 HOH A 102 271 24 HOH HOH . G 6 HOH A 103 272 25 HOH HOH . G 6 HOH A 104 273 26 HOH HOH . G 6 HOH A 105 274 27 HOH HOH . G 6 HOH A 106 275 28 HOH HOH . G 6 HOH A 107 276 29 HOH HOH . G 6 HOH A 108 277 30 HOH HOH . G 6 HOH A 109 278 31 HOH HOH . G 6 HOH A 110 279 32 HOH HOH . G 6 HOH A 111 280 33 HOH HOH . G 6 HOH A 112 281 34 HOH HOH . G 6 HOH A 113 282 35 HOH HOH . G 6 HOH A 114 283 36 HOH HOH . G 6 HOH A 115 284 37 HOH HOH . G 6 HOH A 116 285 38 HOH HOH . G 6 HOH A 117 286 39 HOH HOH . G 6 HOH A 118 287 40 HOH HOH . G 6 HOH A 119 288 41 HOH HOH . G 6 HOH A 120 289 42 HOH HOH . G 6 HOH A 121 290 43 HOH HOH . G 6 HOH A 122 291 44 HOH HOH . G 6 HOH A 123 292 45 HOH HOH . G 6 HOH A 124 293 46 HOH HOH . G 6 HOH A 125 294 47 HOH HOH . G 6 HOH A 126 295 48 HOH HOH . G 6 HOH A 127 296 49 HOH HOH . G 6 HOH A 128 297 50 HOH HOH . G 6 HOH A 129 298 51 HOH HOH . G 6 HOH A 130 299 52 HOH HOH . G 6 HOH A 131 300 53 HOH HOH . G 6 HOH A 132 301 54 HOH HOH . G 6 HOH A 133 302 55 HOH HOH . G 6 HOH A 134 303 56 HOH HOH . G 6 HOH A 135 304 57 HOH HOH . G 6 HOH A 136 305 58 HOH HOH . G 6 HOH A 137 306 59 HOH HOH . G 6 HOH A 138 307 60 HOH HOH . G 6 HOH A 139 308 61 HOH HOH . G 6 HOH A 140 309 62 HOH HOH . G 6 HOH A 141 310 63 HOH HOH . G 6 HOH A 142 311 64 HOH HOH . G 6 HOH A 143 312 65 HOH HOH . G 6 HOH A 144 313 66 HOH HOH . G 6 HOH A 145 314 67 HOH HOH . G 6 HOH A 146 315 68 HOH HOH . G 6 HOH A 147 316 69 HOH HOH . G 6 HOH A 148 317 70 HOH HOH . G 6 HOH A 149 318 71 HOH HOH . G 6 HOH A 150 319 72 HOH HOH . G 6 HOH A 151 320 73 HOH HOH . G 6 HOH A 152 321 74 HOH HOH . G 6 HOH A 153 322 75 HOH HOH . G 6 HOH A 154 323 76 HOH HOH . G 6 HOH A 155 324 77 HOH HOH . G 6 HOH A 156 325 78 HOH HOH . G 6 HOH A 157 326 79 HOH HOH . G 6 HOH A 158 327 80 HOH HOH . G 6 HOH A 159 328 81 HOH HOH . G 6 HOH A 160 329 82 HOH HOH . G 6 HOH A 161 330 83 HOH HOH . G 6 HOH A 162 331 84 HOH HOH . G 6 HOH A 163 332 85 HOH HOH . G 6 HOH A 164 333 86 HOH HOH . G 6 HOH A 165 334 87 HOH HOH . G 6 HOH A 166 335 88 HOH HOH . G 6 HOH A 167 336 89 HOH HOH . G 6 HOH A 168 337 90 HOH HOH . G 6 HOH A 169 338 91 HOH HOH . G 6 HOH A 170 339 92 HOH HOH . G 6 HOH A 171 340 93 HOH HOH . G 6 HOH A 172 341 94 HOH HOH . G 6 HOH A 173 342 95 HOH HOH . G 6 HOH A 174 343 96 HOH HOH . G 6 HOH A 175 344 97 HOH HOH . G 6 HOH A 176 345 98 HOH HOH . G 6 HOH A 177 346 99 HOH HOH . G 6 HOH A 178 347 100 HOH HOH . G 6 HOH A 179 348 101 HOH HOH . G 6 HOH A 180 349 102 HOH HOH . G 6 HOH A 181 350 103 HOH HOH . G 6 HOH A 182 351 104 HOH HOH . G 6 HOH A 183 352 105 HOH HOH . G 6 HOH A 184 353 106 HOH HOH . G 6 HOH A 185 354 107 HOH HOH . G 6 HOH A 186 355 108 HOH HOH . G 6 HOH A 187 356 109 HOH HOH . G 6 HOH A 188 357 110 HOH HOH . G 6 HOH A 189 358 111 HOH HOH . G 6 HOH A 190 359 112 HOH HOH . G 6 HOH A 191 360 113 HOH HOH . G 6 HOH A 192 361 114 HOH HOH . G 6 HOH A 193 362 115 HOH HOH . G 6 HOH A 194 363 116 HOH HOH . G 6 HOH A 195 364 117 HOH HOH . G 6 HOH A 196 365 118 HOH HOH . G 6 HOH A 197 366 119 HOH HOH . G 6 HOH A 198 367 120 HOH HOH . G 6 HOH A 199 368 121 HOH HOH . G 6 HOH A 200 369 122 HOH HOH . G 6 HOH A 201 370 123 HOH HOH . G 6 HOH A 202 371 124 HOH HOH . G 6 HOH A 203 372 125 HOH HOH . G 6 HOH A 204 373 126 HOH HOH . G 6 HOH A 205 374 127 HOH HOH . G 6 HOH A 206 375 128 HOH HOH . G 6 HOH A 207 376 129 HOH HOH . G 6 HOH A 208 377 130 HOH HOH . G 6 HOH A 209 378 131 HOH HOH . G 6 HOH A 210 379 132 HOH HOH . G 6 HOH A 211 380 133 HOH HOH . G 6 HOH A 212 381 134 HOH HOH . G 6 HOH A 213 382 135 HOH HOH . G 6 HOH A 214 383 136 HOH HOH . G 6 HOH A 215 384 137 HOH HOH . G 6 HOH A 216 385 138 HOH HOH . G 6 HOH A 217 386 139 HOH HOH . G 6 HOH A 218 387 140 HOH HOH . G 6 HOH A 219 388 141 HOH HOH . G 6 HOH A 220 389 142 HOH HOH . G 6 HOH A 221 390 143 HOH HOH . G 6 HOH A 222 391 144 HOH HOH . G 6 HOH A 223 392 145 HOH HOH . G 6 HOH A 224 393 146 HOH HOH . G 6 HOH A 225 394 147 HOH HOH . G 6 HOH A 226 395 148 HOH HOH . G 6 HOH A 227 396 149 HOH HOH . G 6 HOH A 228 397 150 HOH HOH . G 6 HOH A 229 398 151 HOH HOH . G 6 HOH A 230 399 152 HOH HOH . G 6 HOH A 231 400 153 HOH HOH . G 6 HOH A 232 401 154 HOH HOH . G 6 HOH A 233 402 155 HOH HOH . G 6 HOH A 234 403 156 HOH HOH . G 6 HOH A 235 404 157 HOH HOH . G 6 HOH A 236 405 158 HOH HOH . G 6 HOH A 237 406 159 HOH HOH . G 6 HOH A 238 407 160 HOH HOH . G 6 HOH A 239 408 161 HOH HOH . G 6 HOH A 240 409 162 HOH HOH . G 6 HOH A 241 410 163 HOH HOH . G 6 HOH A 242 411 164 HOH HOH . G 6 HOH A 243 412 165 HOH HOH . G 6 HOH A 244 413 166 HOH HOH . G 6 HOH A 245 414 167 HOH HOH . G 6 HOH A 246 415 168 HOH HOH . G 6 HOH A 247 416 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HED . . . B 2 30.997 1.798 17.059 1 36.64 ? C1 HED 165 A 1 HETATM 2 O O1 HED . . . B 2 29.626 1.474 17.114 1 37.98 ? O1 HED 165 A 1 HETATM 3 C C2 HED . . . B 2 31.81 0.68 17.695 1 38.13 ? C2 HED 165 A 1 HETATM 4 S S3 HED . . . B 2 33.256 1.311 18.579 1 37.02 ? S3 HED 165 A 1 HETATM 5 S S4 HED . . . B 2 33.259 0.192 20.272 1 38.63 ? S4 HED 165 A 1 HETATM 6 C C5 HED . . . B 2 31.836 0.851 21.171 1 38.04 ? C5 HED 165 A 1 HETATM 7 C C6 HED . . . B 2 32.271 2.038 22.009 1 37.94 ? C6 HED 165 A 1 HETATM 8 O O6 HED . . . B 2 33.555 1.753 22.52 1 35.49 ? O6 HED 165 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 578 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #