data_3HHB
#
_model_server_result.job_id            Hi9HXk-5vbfCphhkRt3P7w 
_model_server_result.datetime_utc      '2024-10-14 05:20:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3hhb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":148}' 
#
_entry.id    3HHB 
#
_exptl.entry_id    3HHB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.34 
_cell.angle_gamma         90 
_cell.entry_id            3HHB 
_cell.length_a            63.15 
_cell.length_b            83.59 
_cell.length_c            53.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3HHB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 H N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 E FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc2 B NE2 HIS 92 B HIS 92 1_555 G FE HEM . B HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc3 C NE2 HIS 87 C HIS 87 1_555 H FE HEM . C HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc4 D NE2 HIS 92 D HIS 92 1_555 J FE HEM . D HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     3HHB 
_atom_sites.fract_transf_matrix[1][1]    0.015835 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002604 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011963 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018837 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HEM A 1 142 1 HEM HEM . 
F 4 PO4 B 1 147 1 PO4 PO4 . 
G 3 HEM B 1 148 1 HEM HEM . 
H 3 HEM C 1 142 1 HEM HEM . 
I 4 PO4 D 1 147 1 PO4 PO4 . 
J 3 HEM D 1 148 1 HEM HEM . 
K 5 HOH A 1 143 3 HOH HOH . 
K 5 HOH A 2 144 5 HOH HOH . 
K 5 HOH A 3 145 7 HOH HOH . 
K 5 HOH A 4 146 8 HOH HOH . 
K 5 HOH A 5 147 9 HOH HOH . 
K 5 HOH A 6 148 10 HOH HOH . 
K 5 HOH A 7 149 11 HOH HOH . 
K 5 HOH A 8 150 12 HOH HOH . 
K 5 HOH A 9 151 13 HOH HOH . 
K 5 HOH A 10 152 14 HOH HOH . 
K 5 HOH A 11 153 15 HOH HOH . 
K 5 HOH A 12 154 16 HOH HOH . 
K 5 HOH A 13 155 18 HOH HOH . 
K 5 HOH A 14 156 19 HOH HOH . 
K 5 HOH A 15 157 20 HOH HOH . 
K 5 HOH A 16 158 23 HOH HOH . 
K 5 HOH A 17 159 24 HOH HOH . 
K 5 HOH A 18 160 28 HOH HOH . 
K 5 HOH A 19 161 30 HOH HOH . 
K 5 HOH A 20 162 35 HOH HOH . 
K 5 HOH A 21 163 36 HOH HOH . 
K 5 HOH A 22 164 37 HOH HOH . 
K 5 HOH A 23 165 38 HOH HOH . 
K 5 HOH A 24 166 39 HOH HOH . 
K 5 HOH A 25 167 40 HOH HOH . 
K 5 HOH A 26 168 41 HOH HOH . 
K 5 HOH A 27 169 42 HOH HOH . 
K 5 HOH A 28 170 43 HOH HOH . 
K 5 HOH A 29 171 44 HOH HOH . 
K 5 HOH A 30 172 46 HOH HOH . 
L 5 HOH B 1 149 2 HOH HOH . 
L 5 HOH B 2 150 4 HOH HOH . 
L 5 HOH B 3 151 17 HOH HOH . 
L 5 HOH B 4 152 21 HOH HOH . 
L 5 HOH B 5 153 22 HOH HOH . 
L 5 HOH B 6 154 25 HOH HOH . 
L 5 HOH B 7 155 26 HOH HOH . 
L 5 HOH B 8 156 27 HOH HOH . 
L 5 HOH B 9 157 29 HOH HOH . 
L 5 HOH B 10 158 31 HOH HOH . 
L 5 HOH B 11 159 32 HOH HOH . 
L 5 HOH B 12 160 33 HOH HOH . 
L 5 HOH B 13 161 34 HOH HOH . 
L 5 HOH B 14 162 45 HOH HOH . 
L 5 HOH B 15 163 47 HOH HOH . 
L 5 HOH B 16 164 48 HOH HOH . 
L 5 HOH B 17 165 49 HOH HOH . 
L 5 HOH B 18 166 50 HOH HOH . 
L 5 HOH B 19 167 51 HOH HOH . 
L 5 HOH B 20 168 52 HOH HOH . 
L 5 HOH B 21 169 53 HOH HOH . 
L 5 HOH B 22 170 54 HOH HOH . 
L 5 HOH B 23 171 55 HOH HOH . 
M 5 HOH C 1 143 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . G 3 19.582 3.003 60.876 1 15.5 ? CHA HEM 148 B 1 
HETATM 2 C CHB HEM . . . G 3 20.372 0.357 56.875 1 18.58 ? CHB HEM 148 B 1 
HETATM 3 C CHC HEM . . . G 3 19.427 4.224 54.137 1 11.7 ? CHC HEM 148 B 1 
HETATM 4 C CHD HEM . . . G 3 18.508 6.889 58.09 1 15.17 ? CHD HEM 148 B 1 
HETATM 5 C C1A HEM . . . G 3 19.934 1.939 60.022 1 24.7 ? C1A HEM 148 B 1 
HETATM 6 C C2A HEM . . . G 3 20.523 0.696 60.487 1 18.89 ? C2A HEM 148 B 1 
HETATM 7 C C3A HEM . . . G 3 20.74 -0.051 59.356 1 19.68 ? C3A HEM 148 B 1 
HETATM 8 C C4A HEM . . . G 3 20.315 0.743 58.222 1 24.09 ? C4A HEM 148 B 1 
HETATM 9 C CMA HEM . . . G 3 21.451 -1.388 59.269 1 17.65 ? CMA HEM 148 B 1 
HETATM 10 C CAA HEM . . . G 3 20.666 0.269 61.943 1 19.44 ? CAA HEM 148 B 1 
HETATM 11 C CBA HEM . . . G 3 19.367 -0.338 62.502 1 41.02 ? CBA HEM 148 B 1 
HETATM 12 C CGA HEM . . . G 3 19.363 -0.803 63.937 1 63.91 ? CGA HEM 148 B 1 
HETATM 13 O O1A HEM . . . G 3 19.952 -0.146 64.789 1 46.62 ? O1A HEM 148 B 1 
HETATM 14 O O2A HEM . . . G 3 18.762 -1.804 64.296 1 48.75 ? O2A HEM 148 B 1 
HETATM 15 C C1B HEM . . . G 3 20.133 1.198 55.778 1 13.35 ? C1B HEM 148 B 1 
HETATM 16 C C2B HEM . . . G 3 20.232 0.768 54.409 1 8.76 ? C2B HEM 148 B 1 
HETATM 17 C C3B HEM . . . G 3 19.971 1.844 53.629 1 10.95 ? C3B HEM 148 B 1 
HETATM 18 C C4B HEM . . . G 3 19.711 2.932 54.547 1 12.19 ? C4B HEM 148 B 1 
HETATM 19 C CMB HEM . . . G 3 20.729 -0.597 53.997 1 13.54 ? CMB HEM 148 B 1 
HETATM 20 C CAB HEM . . . G 3 20.052 1.984 52.14 1 15.74 ? CAB HEM 148 B 1 
HETATM 21 C CBB HEM . . . G 3 21.147 1.59 51.413 1 34.44 ? CBB HEM 148 B 1 
HETATM 22 C C1C HEM . . . G 3 19.143 5.299 54.977 1 14.85 ? C1C HEM 148 B 1 
HETATM 23 C C2C HEM . . . G 3 18.951 6.662 54.516 1 15.22 ? C2C HEM 148 B 1 
HETATM 24 C C3C HEM . . . G 3 18.688 7.41 55.634 1 11.94 ? C3C HEM 148 B 1 
HETATM 25 C C4C HEM . . . G 3 18.728 6.503 56.761 1 12.33 ? C4C HEM 148 B 1 
HETATM 26 C CMC HEM . . . G 3 19.133 7.172 53.096 1 15.2 ? CMC HEM 148 B 1 
HETATM 27 C CAC HEM . . . G 3 18.319 8.851 55.749 1 11.23 ? CAC HEM 148 B 1 
HETATM 28 C CBC HEM . . . G 3 18.962 9.848 55.033 1 17.17 ? CBC HEM 148 B 1 
HETATM 29 C C1D HEM . . . G 3 18.726 6.055 59.2 1 17.13 ? C1D HEM 148 B 1 
HETATM 30 C C2D HEM . . . G 3 18.64 6.48 60.574 1 18.63 ? C2D HEM 148 B 1 
HETATM 31 C C3D HEM . . . G 3 18.939 5.408 61.371 1 20.76 ? C3D HEM 148 B 1 
HETATM 32 C C4D HEM . . . G 3 19.221 4.299 60.472 1 17.47 ? C4D HEM 148 B 1 
HETATM 33 C CMD HEM . . . G 3 18.298 7.883 61.028 1 20.94 ? CMD HEM 148 B 1 
HETATM 34 C CAD HEM . . . G 3 19.101 5.445 62.874 1 20.9 ? CAD HEM 148 B 1 
HETATM 35 C CBD HEM . . . G 3 20.542 5.641 63.32 1 32.01 ? CBD HEM 148 B 1 
HETATM 36 C CGD HEM . . . G 3 20.612 5.698 64.77 1 36.02 ? CGD HEM 148 B 1 
HETATM 37 O O1D HEM . . . G 3 21.422 6.455 65.25 1 38.74 ? O1D HEM 148 B 1 
HETATM 38 O O2D HEM . . . G 3 19.935 5.22 65.625 1 29.1 ? O2D HEM 148 B 1 
HETATM 39 N NA HEM . . . G 3 19.818 1.942 58.642 1 16.79 ? NA HEM 148 B 1 
HETATM 40 N NB HEM . . . G 3 19.748 2.514 55.852 1 12.71 ? NB HEM 148 B 1 
HETATM 41 N NC HEM . . . G 3 19.04 5.222 56.354 1 11.73 ? NC HEM 148 B 1 
HETATM 42 N ND HEM . . . G 3 19.102 4.727 59.152 1 15.96 ? ND HEM 148 B 1 
HETATM 43 FE FE HEM . . . G 3 19.08 3.518 57.481 1 14.62 ? FE HEM 148 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#