data_3HHE # _model_server_result.job_id QuMGwYGQEIAO47d6ld-Fwg _model_server_result.datetime_utc '2025-08-31 04:25:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hhe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3HHE # _exptl.entry_id 3HHE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.11 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description RIBULOSE-5-PHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3HHE _cell.length_a 40.19 _cell.length_b 79.584 _cell.length_c 151.127 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HHE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 220 A LEU 220 1_555 D K K . A K 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc2 A O ILE 222 A ILE 222 1_555 D K K . A K 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc3 A O VAL 225 A VAL 225 1_555 D K K . A K 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc4 A OE2 GLU 227 A GLU 227 1_555 G K K . B K 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc5 D K K . A K 500 1_555 B OE1 GLU 227 B GLU 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc6 B O LEU 220 B LEU 220 1_555 G K K . B K 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc7 B O VAL 225 B VAL 225 1_555 G K K . B K 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? # _chem_comp.formula 'C5 H11 O8 P' _chem_comp.formula_weight 230.11 _chem_comp.id 5RP _chem_comp.mon_nstd_flag . _chem_comp.name RIBULOSE-5-PHOSPHATE _chem_comp.type saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 5RP sing 1 n n C2 O1 5RP sing 2 n n C2 H21 5RP sing 3 n n C2 H22 5RP sing 4 n n C3 C5 5RP sing 5 n n C3 O4 5RP doub 6 n n C5 O13 5RP sing 7 n n C5 C6 5RP sing 8 n n C5 H5 5RP sing 9 n n O13 H13 5RP sing 10 n n C6 O14 5RP sing 11 n n C6 C7 5RP sing 12 n n C6 H6 5RP sing 13 n n O14 H14 5RP sing 14 n n C7 O8 5RP sing 15 n n C7 H71 5RP sing 16 n n C7 H72 5RP sing 17 n n O8 P9 5RP sing 18 n n P9 O12 5RP doub 19 n n P9 O11 5RP sing 20 n n P9 O10 5RP sing 21 n n O11 H11 5RP sing 22 n n O10 H10 5RP sing 23 n n O1 HO1 5RP sing 24 n n # _atom_sites.entry_id 3HHE _atom_sites.fract_transf_matrix[1][1] 0.024882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5RP A 1 501 501 5RP 5RP . D 3 K A 1 500 500 K K . E 4 CL A 1 499 499 CL CL . F 2 5RP B 1 501 501 5RP 5RP . G 3 K B 1 500 500 K K . H 5 HOH A 1 256 2 HOH HOH . H 5 HOH A 2 257 6 HOH HOH . H 5 HOH A 3 258 8 HOH HOH . H 5 HOH A 4 259 9 HOH HOH . H 5 HOH A 5 260 10 HOH HOH . H 5 HOH A 6 261 11 HOH HOH . H 5 HOH A 7 262 12 HOH HOH . H 5 HOH A 8 263 13 HOH HOH . H 5 HOH A 9 264 16 HOH HOH . H 5 HOH A 10 265 18 HOH HOH . H 5 HOH A 11 266 19 HOH HOH . H 5 HOH A 12 267 20 HOH HOH . H 5 HOH A 13 268 22 HOH HOH . H 5 HOH A 14 269 25 HOH HOH . H 5 HOH A 15 270 26 HOH HOH . H 5 HOH A 16 271 28 HOH HOH . H 5 HOH A 17 272 31 HOH HOH . H 5 HOH A 18 273 32 HOH HOH . H 5 HOH A 19 274 33 HOH HOH . H 5 HOH A 20 275 34 HOH HOH . H 5 HOH A 21 276 35 HOH HOH . H 5 HOH A 22 277 36 HOH HOH . H 5 HOH A 23 278 37 HOH HOH . H 5 HOH A 24 279 38 HOH HOH . H 5 HOH A 25 280 39 HOH HOH . H 5 HOH A 26 281 40 HOH HOH . H 5 HOH A 27 282 41 HOH HOH . H 5 HOH A 28 283 42 HOH HOH . H 5 HOH A 29 284 43 HOH HOH . H 5 HOH A 30 285 44 HOH HOH . H 5 HOH A 31 286 45 HOH HOH . H 5 HOH A 32 287 46 HOH HOH . H 5 HOH A 33 288 47 HOH HOH . H 5 HOH A 34 289 48 HOH HOH . H 5 HOH A 35 290 49 HOH HOH . H 5 HOH A 36 291 50 HOH HOH . H 5 HOH A 37 292 53 HOH HOH . H 5 HOH A 38 293 54 HOH HOH . H 5 HOH A 39 294 55 HOH HOH . H 5 HOH A 40 295 57 HOH HOH . H 5 HOH A 41 296 58 HOH HOH . H 5 HOH A 42 297 59 HOH HOH . H 5 HOH A 43 298 60 HOH HOH . H 5 HOH A 44 299 62 HOH HOH . H 5 HOH A 45 300 63 HOH HOH . H 5 HOH A 46 301 64 HOH HOH . H 5 HOH A 47 302 65 HOH HOH . H 5 HOH A 48 303 66 HOH HOH . H 5 HOH A 49 304 67 HOH HOH . H 5 HOH A 50 305 68 HOH HOH . H 5 HOH A 51 306 69 HOH HOH . H 5 HOH A 52 307 70 HOH HOH . H 5 HOH A 53 308 71 HOH HOH . H 5 HOH A 54 309 73 HOH HOH . H 5 HOH A 55 310 74 HOH HOH . H 5 HOH A 56 311 77 HOH HOH . H 5 HOH A 57 312 92 HOH HOH . H 5 HOH A 58 313 93 HOH HOH . H 5 HOH A 59 314 94 HOH HOH . H 5 HOH A 60 315 95 HOH HOH . H 5 HOH A 61 316 96 HOH HOH . H 5 HOH A 62 317 97 HOH HOH . H 5 HOH A 63 318 98 HOH HOH . H 5 HOH A 64 319 99 HOH HOH . H 5 HOH A 65 320 100 HOH HOH . H 5 HOH A 66 321 101 HOH HOH . H 5 HOH A 67 322 104 HOH HOH . H 5 HOH A 68 323 105 HOH HOH . H 5 HOH A 69 324 106 HOH HOH . H 5 HOH A 70 325 108 HOH HOH . H 5 HOH A 71 326 109 HOH HOH . H 5 HOH A 72 327 110 HOH HOH . H 5 HOH A 73 328 111 HOH HOH . H 5 HOH A 74 329 129 HOH HOH . H 5 HOH A 75 330 130 HOH HOH . H 5 HOH A 76 331 131 HOH HOH . H 5 HOH A 77 332 132 HOH HOH . H 5 HOH A 78 333 138 HOH HOH . H 5 HOH A 79 334 140 HOH HOH . H 5 HOH A 80 335 141 HOH HOH . H 5 HOH A 81 336 142 HOH HOH . H 5 HOH A 82 337 143 HOH HOH . I 5 HOH B 1 256 1 HOH HOH . I 5 HOH B 2 257 3 HOH HOH . I 5 HOH B 3 258 4 HOH HOH . I 5 HOH B 4 259 5 HOH HOH . I 5 HOH B 5 260 7 HOH HOH . I 5 HOH B 6 261 14 HOH HOH . I 5 HOH B 7 262 15 HOH HOH . I 5 HOH B 8 263 17 HOH HOH . I 5 HOH B 9 264 21 HOH HOH . I 5 HOH B 10 265 23 HOH HOH . I 5 HOH B 11 266 24 HOH HOH . I 5 HOH B 12 267 27 HOH HOH . I 5 HOH B 13 268 29 HOH HOH . I 5 HOH B 14 269 30 HOH HOH . I 5 HOH B 15 270 51 HOH HOH . I 5 HOH B 16 271 52 HOH HOH . I 5 HOH B 17 272 56 HOH HOH . I 5 HOH B 18 273 61 HOH HOH . I 5 HOH B 19 274 72 HOH HOH . I 5 HOH B 20 275 75 HOH HOH . I 5 HOH B 21 276 76 HOH HOH . I 5 HOH B 22 277 78 HOH HOH . I 5 HOH B 23 278 79 HOH HOH . I 5 HOH B 24 279 80 HOH HOH . I 5 HOH B 25 280 81 HOH HOH . I 5 HOH B 26 281 82 HOH HOH . I 5 HOH B 27 282 83 HOH HOH . I 5 HOH B 28 283 84 HOH HOH . I 5 HOH B 29 284 85 HOH HOH . I 5 HOH B 30 285 86 HOH HOH . I 5 HOH B 31 286 87 HOH HOH . I 5 HOH B 32 287 88 HOH HOH . I 5 HOH B 33 288 89 HOH HOH . I 5 HOH B 34 289 90 HOH HOH . I 5 HOH B 35 290 91 HOH HOH . I 5 HOH B 36 291 102 HOH HOH . I 5 HOH B 37 292 103 HOH HOH . I 5 HOH B 38 293 107 HOH HOH . I 5 HOH B 39 294 112 HOH HOH . I 5 HOH B 40 295 113 HOH HOH . I 5 HOH B 41 296 114 HOH HOH . I 5 HOH B 42 297 115 HOH HOH . I 5 HOH B 43 298 116 HOH HOH . I 5 HOH B 44 299 117 HOH HOH . I 5 HOH B 45 300 118 HOH HOH . I 5 HOH B 46 301 119 HOH HOH . I 5 HOH B 47 302 120 HOH HOH . I 5 HOH B 48 303 121 HOH HOH . I 5 HOH B 49 304 122 HOH HOH . I 5 HOH B 50 305 123 HOH HOH . I 5 HOH B 51 306 124 HOH HOH . I 5 HOH B 52 307 125 HOH HOH . I 5 HOH B 53 308 126 HOH HOH . I 5 HOH B 54 309 127 HOH HOH . I 5 HOH B 55 310 128 HOH HOH . I 5 HOH B 56 311 133 HOH HOH . I 5 HOH B 57 312 134 HOH HOH . I 5 HOH B 58 313 135 HOH HOH . I 5 HOH B 59 314 136 HOH HOH . I 5 HOH B 60 315 137 HOH HOH . I 5 HOH B 61 316 139 HOH HOH . I 5 HOH B 62 317 144 HOH HOH . I 5 HOH B 63 318 145 HOH HOH . I 5 HOH B 64 319 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 5RP . . . C 2 27.691 72.14 25.25 1 50.65 ? C2 5RP 501 A 1 HETATM 2 C C3 5RP . . . C 2 28.062 73.032 26.407 1 53.02 ? C3 5RP 501 A 1 HETATM 3 C C5 5RP . . . C 2 28.894 72.712 27.423 1 54.12 ? C5 5RP 501 A 1 HETATM 4 O O13 5RP . . . C 2 29.133 73.61 28.408 1 51.48 ? O13 5RP 501 A 1 HETATM 5 C C6 5RP . . . C 2 29.555 71.356 27.503 1 53.81 ? C6 5RP 501 A 1 HETATM 6 O O14 5RP . . . C 2 28.758 70.335 26.851 1 55.36 ? O14 5RP 501 A 1 HETATM 7 C C7 5RP . . . C 2 29.789 70.976 28.976 1 52.13 ? C7 5RP 501 A 1 HETATM 8 O O8 5RP . . . C 2 28.568 70.675 29.667 1 48.85 ? O8 5RP 501 A 1 HETATM 9 P P9 5RP . . . C 2 28.536 70.036 31.148 1 47.08 ? P9 5RP 501 A 1 HETATM 10 O O12 5RP . . . C 2 27.263 69.215 31.084 1 46.54 ? O12 5RP 501 A 1 HETATM 11 O O11 5RP . . . C 2 28.545 71.243 32.057 1 45.53 ? O11 5RP 501 A 1 HETATM 12 O O10 5RP . . . C 2 29.767 69.181 31.288 1 47.57 ? O10 5RP 501 A 1 HETATM 13 O O4 5RP . . . C 2 27.505 74.226 26.412 1 54.39 ? O4 5RP 501 A 1 HETATM 14 O O1 5RP . . . C 2 26.914 72.912 24.326 1 46.56 ? O1 5RP 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 595 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #