data_3HHX # _model_server_result.job_id XRojrDwTiTXe5eYd7stjVg _model_server_result.datetime_utc '2024-11-01 19:30:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hhx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":283}' # _entry.id 3HHX # _exptl.entry_id 3HHX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.11 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZENE-1,2,3-TRIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.84 _cell.angle_gamma 90 _cell.entry_id 3HHX _cell.length_a 89.17 _cell.length_b 37.8 _cell.length_c 75.04 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HHX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -6.331388 0 74.772422 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 162 A TYR 162 1_555 B FE FE . A FE 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc2 A NE2 HIS 220 A HIS 220 1_555 B FE FE . A FE 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc3 A NE2 HIS 222 A HIS 222 1_555 B FE FE . A FE 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc4 B FE FE . A FE 281 1_555 D O3 PYG . A PYG 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc5 B FE FE . A FE 281 1_555 D O2 PYG . A PYG 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? # _chem_comp.formula 'C6 H6 O3' _chem_comp.formula_weight 126.11 _chem_comp.id PYG _chem_comp.mon_nstd_flag . _chem_comp.name BENZENE-1,2,3-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PYROGALLOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PYG doub 413 n y C1 C6 PYG sing 414 n y C1 O1 PYG sing 415 n n C2 C3 PYG sing 416 n y C2 O2 PYG sing 417 n n C3 C4 PYG doub 418 n y C3 O3 PYG sing 419 n n C4 C5 PYG sing 420 n y C4 H4 PYG sing 421 n n C5 C6 PYG doub 422 n y C5 H5 PYG sing 423 n n C6 H6 PYG sing 424 n n O1 HO1 PYG sing 425 n n O2 HO2 PYG sing 426 n n O3 HO3 PYG sing 427 n n # _atom_sites.entry_id 3HHX _atom_sites.fract_transf_matrix[1][1] 0.011215 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00095 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 281 281 FE FE . C 3 6PL A 1 282 282 6PL 6PL . D 4 PYG A 1 283 1 PYG PYG . E 5 HOH A 1 284 284 HOH HOH . E 5 HOH A 2 285 285 HOH HOH . E 5 HOH A 3 286 286 HOH HOH . E 5 HOH A 4 287 287 HOH HOH . E 5 HOH A 5 288 288 HOH HOH . E 5 HOH A 6 289 289 HOH HOH . E 5 HOH A 7 290 290 HOH HOH . E 5 HOH A 8 291 291 HOH HOH . E 5 HOH A 9 292 292 HOH HOH . E 5 HOH A 10 293 293 HOH HOH . E 5 HOH A 11 294 294 HOH HOH . E 5 HOH A 12 295 295 HOH HOH . E 5 HOH A 13 296 296 HOH HOH . E 5 HOH A 14 297 297 HOH HOH . E 5 HOH A 15 298 298 HOH HOH . E 5 HOH A 16 299 299 HOH HOH . E 5 HOH A 17 300 300 HOH HOH . E 5 HOH A 18 301 301 HOH HOH . E 5 HOH A 19 302 302 HOH HOH . E 5 HOH A 20 303 303 HOH HOH . E 5 HOH A 21 304 304 HOH HOH . E 5 HOH A 22 305 305 HOH HOH . E 5 HOH A 23 306 306 HOH HOH . E 5 HOH A 24 307 307 HOH HOH . E 5 HOH A 25 308 308 HOH HOH . E 5 HOH A 26 309 309 HOH HOH . E 5 HOH A 27 310 310 HOH HOH . E 5 HOH A 28 311 311 HOH HOH . E 5 HOH A 29 312 312 HOH HOH . E 5 HOH A 30 313 313 HOH HOH . E 5 HOH A 31 314 314 HOH HOH . E 5 HOH A 32 315 315 HOH HOH . E 5 HOH A 33 316 316 HOH HOH . E 5 HOH A 34 317 317 HOH HOH . E 5 HOH A 35 318 318 HOH HOH . E 5 HOH A 36 319 319 HOH HOH . E 5 HOH A 37 320 320 HOH HOH . E 5 HOH A 38 321 321 HOH HOH . E 5 HOH A 39 322 322 HOH HOH . E 5 HOH A 40 323 323 HOH HOH . E 5 HOH A 41 324 324 HOH HOH . E 5 HOH A 42 325 325 HOH HOH . E 5 HOH A 43 326 326 HOH HOH . E 5 HOH A 44 327 327 HOH HOH . E 5 HOH A 45 328 328 HOH HOH . E 5 HOH A 46 329 329 HOH HOH . E 5 HOH A 47 330 330 HOH HOH . E 5 HOH A 48 331 331 HOH HOH . E 5 HOH A 49 332 332 HOH HOH . E 5 HOH A 50 333 333 HOH HOH . E 5 HOH A 51 334 334 HOH HOH . E 5 HOH A 52 335 335 HOH HOH . E 5 HOH A 53 336 336 HOH HOH . E 5 HOH A 54 337 337 HOH HOH . E 5 HOH A 55 338 338 HOH HOH . E 5 HOH A 56 339 339 HOH HOH . E 5 HOH A 57 340 340 HOH HOH . E 5 HOH A 58 341 341 HOH HOH . E 5 HOH A 59 342 342 HOH HOH . E 5 HOH A 60 343 343 HOH HOH . E 5 HOH A 61 344 344 HOH HOH . E 5 HOH A 62 345 345 HOH HOH . E 5 HOH A 63 346 346 HOH HOH . E 5 HOH A 64 347 347 HOH HOH . E 5 HOH A 65 348 348 HOH HOH . E 5 HOH A 66 349 349 HOH HOH . E 5 HOH A 67 350 350 HOH HOH . E 5 HOH A 68 351 351 HOH HOH . E 5 HOH A 69 352 352 HOH HOH . E 5 HOH A 70 353 353 HOH HOH . E 5 HOH A 71 354 354 HOH HOH . E 5 HOH A 72 355 355 HOH HOH . E 5 HOH A 73 356 356 HOH HOH . E 5 HOH A 74 357 357 HOH HOH . E 5 HOH A 75 358 358 HOH HOH . E 5 HOH A 76 359 359 HOH HOH . E 5 HOH A 77 360 360 HOH HOH . E 5 HOH A 78 361 361 HOH HOH . E 5 HOH A 79 362 362 HOH HOH . E 5 HOH A 80 363 363 HOH HOH . E 5 HOH A 81 364 364 HOH HOH . E 5 HOH A 82 365 365 HOH HOH . E 5 HOH A 83 366 366 HOH HOH . E 5 HOH A 84 367 367 HOH HOH . E 5 HOH A 85 368 368 HOH HOH . E 5 HOH A 86 369 369 HOH HOH . E 5 HOH A 87 370 370 HOH HOH . E 5 HOH A 88 371 371 HOH HOH . E 5 HOH A 89 372 372 HOH HOH . E 5 HOH A 90 373 373 HOH HOH . E 5 HOH A 91 374 374 HOH HOH . E 5 HOH A 92 375 375 HOH HOH . E 5 HOH A 93 376 376 HOH HOH . E 5 HOH A 94 377 377 HOH HOH . E 5 HOH A 95 378 378 HOH HOH . E 5 HOH A 96 379 379 HOH HOH . E 5 HOH A 97 380 380 HOH HOH . E 5 HOH A 98 381 381 HOH HOH . E 5 HOH A 99 382 382 HOH HOH . E 5 HOH A 100 383 383 HOH HOH . E 5 HOH A 101 384 384 HOH HOH . E 5 HOH A 102 385 385 HOH HOH . E 5 HOH A 103 386 386 HOH HOH . E 5 HOH A 104 387 387 HOH HOH . E 5 HOH A 105 388 388 HOH HOH . E 5 HOH A 106 389 389 HOH HOH . E 5 HOH A 107 390 390 HOH HOH . E 5 HOH A 108 391 391 HOH HOH . E 5 HOH A 109 392 392 HOH HOH . E 5 HOH A 110 393 393 HOH HOH . E 5 HOH A 111 394 394 HOH HOH . E 5 HOH A 112 395 395 HOH HOH . E 5 HOH A 113 396 396 HOH HOH . E 5 HOH A 114 397 397 HOH HOH . E 5 HOH A 115 398 398 HOH HOH . E 5 HOH A 116 399 399 HOH HOH . E 5 HOH A 117 400 400 HOH HOH . E 5 HOH A 118 401 401 HOH HOH . E 5 HOH A 119 402 402 HOH HOH . E 5 HOH A 120 403 403 HOH HOH . E 5 HOH A 121 404 404 HOH HOH . E 5 HOH A 122 405 405 HOH HOH . E 5 HOH A 123 406 406 HOH HOH . E 5 HOH A 124 407 407 HOH HOH . E 5 HOH A 125 408 408 HOH HOH . E 5 HOH A 126 409 409 HOH HOH . E 5 HOH A 127 410 410 HOH HOH . E 5 HOH A 128 411 411 HOH HOH . E 5 HOH A 129 412 412 HOH HOH . E 5 HOH A 130 413 413 HOH HOH . E 5 HOH A 131 414 414 HOH HOH . E 5 HOH A 132 415 415 HOH HOH . E 5 HOH A 133 416 416 HOH HOH . E 5 HOH A 134 417 417 HOH HOH . E 5 HOH A 135 418 418 HOH HOH . E 5 HOH A 136 419 419 HOH HOH . E 5 HOH A 137 420 420 HOH HOH . E 5 HOH A 138 421 421 HOH HOH . E 5 HOH A 139 422 422 HOH HOH . E 5 HOH A 140 423 423 HOH HOH . E 5 HOH A 141 424 424 HOH HOH . E 5 HOH A 142 425 425 HOH HOH . E 5 HOH A 143 426 426 HOH HOH . E 5 HOH A 144 427 427 HOH HOH . E 5 HOH A 145 428 428 HOH HOH . E 5 HOH A 146 429 429 HOH HOH . E 5 HOH A 147 430 430 HOH HOH . E 5 HOH A 148 431 431 HOH HOH . E 5 HOH A 149 432 432 HOH HOH . E 5 HOH A 150 433 433 HOH HOH . E 5 HOH A 151 434 434 HOH HOH . E 5 HOH A 152 435 435 HOH HOH . E 5 HOH A 153 436 436 HOH HOH . E 5 HOH A 154 437 437 HOH HOH . E 5 HOH A 155 438 438 HOH HOH . E 5 HOH A 156 439 439 HOH HOH . E 5 HOH A 157 440 440 HOH HOH . E 5 HOH A 158 441 441 HOH HOH . E 5 HOH A 159 442 442 HOH HOH . E 5 HOH A 160 443 443 HOH HOH . E 5 HOH A 161 444 444 HOH HOH . E 5 HOH A 162 445 445 HOH HOH . E 5 HOH A 163 446 446 HOH HOH . E 5 HOH A 164 447 447 HOH HOH . E 5 HOH A 165 448 448 HOH HOH . E 5 HOH A 166 449 449 HOH HOH . E 5 HOH A 167 450 450 HOH HOH . E 5 HOH A 168 451 451 HOH HOH . E 5 HOH A 169 452 452 HOH HOH . E 5 HOH A 170 453 453 HOH HOH . E 5 HOH A 171 454 454 HOH HOH . E 5 HOH A 172 455 455 HOH HOH . E 5 HOH A 173 456 456 HOH HOH . E 5 HOH A 174 457 457 HOH HOH . E 5 HOH A 175 458 458 HOH HOH . E 5 HOH A 176 459 459 HOH HOH . E 5 HOH A 177 460 460 HOH HOH . E 5 HOH A 178 461 461 HOH HOH . E 5 HOH A 179 462 462 HOH HOH . E 5 HOH A 180 463 463 HOH HOH . E 5 HOH A 181 464 464 HOH HOH . E 5 HOH A 182 465 465 HOH HOH . E 5 HOH A 183 466 466 HOH HOH . E 5 HOH A 184 467 467 HOH HOH . E 5 HOH A 185 468 468 HOH HOH . E 5 HOH A 186 469 469 HOH HOH . E 5 HOH A 187 470 470 HOH HOH . E 5 HOH A 188 471 471 HOH HOH . E 5 HOH A 189 472 472 HOH HOH . E 5 HOH A 190 473 473 HOH HOH . E 5 HOH A 191 474 474 HOH HOH . E 5 HOH A 192 475 475 HOH HOH . E 5 HOH A 193 476 476 HOH HOH . E 5 HOH A 194 477 477 HOH HOH . E 5 HOH A 195 478 478 HOH HOH . E 5 HOH A 196 479 479 HOH HOH . E 5 HOH A 197 480 480 HOH HOH . E 5 HOH A 198 481 481 HOH HOH . E 5 HOH A 199 482 482 HOH HOH . E 5 HOH A 200 483 483 HOH HOH . E 5 HOH A 201 484 484 HOH HOH . E 5 HOH A 202 485 485 HOH HOH . E 5 HOH A 203 486 486 HOH HOH . E 5 HOH A 204 487 487 HOH HOH . E 5 HOH A 205 488 488 HOH HOH . E 5 HOH A 206 489 489 HOH HOH . E 5 HOH A 207 490 490 HOH HOH . E 5 HOH A 208 491 491 HOH HOH . E 5 HOH A 209 492 492 HOH HOH . E 5 HOH A 210 493 493 HOH HOH . E 5 HOH A 211 494 494 HOH HOH . E 5 HOH A 212 495 495 HOH HOH . E 5 HOH A 213 496 496 HOH HOH . E 5 HOH A 214 497 497 HOH HOH . E 5 HOH A 215 498 498 HOH HOH . E 5 HOH A 216 499 499 HOH HOH . E 5 HOH A 217 500 500 HOH HOH . E 5 HOH A 218 501 501 HOH HOH . E 5 HOH A 219 502 502 HOH HOH . E 5 HOH A 220 503 503 HOH HOH . E 5 HOH A 221 504 504 HOH HOH . E 5 HOH A 222 505 505 HOH HOH . E 5 HOH A 223 506 506 HOH HOH . E 5 HOH A 224 507 507 HOH HOH . E 5 HOH A 225 508 508 HOH HOH . E 5 HOH A 226 509 509 HOH HOH . E 5 HOH A 227 510 510 HOH HOH . E 5 HOH A 228 511 511 HOH HOH . E 5 HOH A 229 512 512 HOH HOH . E 5 HOH A 230 513 513 HOH HOH . E 5 HOH A 231 514 514 HOH HOH . E 5 HOH A 232 515 515 HOH HOH . E 5 HOH A 233 516 516 HOH HOH . E 5 HOH A 234 517 517 HOH HOH . E 5 HOH A 235 518 518 HOH HOH . E 5 HOH A 236 519 519 HOH HOH . E 5 HOH A 237 520 520 HOH HOH . E 5 HOH A 238 521 521 HOH HOH . E 5 HOH A 239 522 522 HOH HOH . E 5 HOH A 240 523 523 HOH HOH . E 5 HOH A 241 524 524 HOH HOH . E 5 HOH A 242 525 525 HOH HOH . E 5 HOH A 243 526 526 HOH HOH . E 5 HOH A 244 527 283 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PYG . . . D 4 3.413 -0.898 20.333 1 32.5 ? C1 PYG 283 A 1 HETATM 2 C C2 PYG . . . D 4 3.723 -1.673 19.127 1 31.6 ? C2 PYG 283 A 1 HETATM 3 C C3 PYG . . . D 4 2.799 -2.728 18.71 1 32.8 ? C3 PYG 283 A 1 HETATM 4 C C4 PYG . . . D 4 1.648 -2.971 19.484 1 32.58 ? C4 PYG 283 A 1 HETATM 5 C C5 PYG . . . D 4 1.394 -2.207 20.642 1 33.24 ? C5 PYG 283 A 1 HETATM 6 C C6 PYG . . . D 4 2.26 -1.18 21.067 1 32 ? C6 PYG 283 A 1 HETATM 7 O O1 PYG . . . D 4 4.304 0.061 20.677 1 36.08 ? O1 PYG 283 A 1 HETATM 8 O O2 PYG . . . D 4 4.822 -1.418 18.387 1 32.41 ? O2 PYG 283 A 1 HETATM 9 O O3 PYG . . . D 4 3.144 -3.397 17.572 1 34.21 ? O3 PYG 283 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 9 #