data_3HJQ # _model_server_result.job_id VjVGQIKz0F1JDN1Kky-Pog _model_server_result.datetime_utc '2024-11-24 16:50:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3hjq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":283}' # _entry.id 3HJQ # _exptl.entry_id 3HJQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 124.137 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-METHYLCATECHOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.96 _cell.angle_gamma 90 _cell.entry_id 3HJQ _cell.length_a 88.938 _cell.length_b 37.585 _cell.length_c 74.81 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HJQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -6.468091 0 74.529859 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 162 A TYR 162 1_555 B FE FE . A FE 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? metalc ? metalc2 A NE2 HIS 220 A HIS 220 1_555 B FE FE . A FE 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc3 A NE2 HIS 222 A HIS 222 1_555 B FE FE . A FE 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc4 B FE FE . A FE 281 1_555 D OA1 MBD . A MBD 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? metalc ? metalc5 B FE FE . A FE 281 1_555 D OA2 MBD . A MBD 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'C7 H8 O2' _chem_comp.formula_weight 124.137 _chem_comp.id MBD _chem_comp.mon_nstd_flag . _chem_comp.name 3-METHYLCATECHOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-METHYL-BENZENE-1,2-DIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA1 OA1 MBD sing 354 n n CA1 CA2 MBD doub 355 n y CA1 CA6 MBD sing 356 n y OA1 HA1 MBD sing 357 n n CA2 OA2 MBD sing 358 n n CA2 CA3 MBD sing 359 n y OA2 HA2 MBD sing 360 n n CA3 CB3 MBD sing 361 n n CA3 CA4 MBD doub 362 n y CB3 HB31 MBD sing 363 n n CB3 HB32 MBD sing 364 n n CB3 HB33 MBD sing 365 n n CA4 CA5 MBD sing 366 n y CA4 HA4 MBD sing 367 n n CA5 CA6 MBD doub 368 n y CA5 HA5 MBD sing 369 n n CA6 HA6 MBD sing 370 n n # _atom_sites.entry_id 3HJQ _atom_sites.fract_transf_matrix[1][1] 0.011244 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000976 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 281 281 FE FE . C 3 6PL A 1 282 282 6PL 6PL . D 4 MBD A 1 283 283 MBD MBD . E 5 HOH A 1 284 1 HOH HOH . E 5 HOH A 2 285 2 HOH HOH . E 5 HOH A 3 286 3 HOH HOH . E 5 HOH A 4 287 4 HOH HOH . E 5 HOH A 5 288 5 HOH HOH . E 5 HOH A 6 289 6 HOH HOH . E 5 HOH A 7 290 7 HOH HOH . E 5 HOH A 8 291 8 HOH HOH . E 5 HOH A 9 292 9 HOH HOH . E 5 HOH A 10 293 10 HOH HOH . E 5 HOH A 11 294 11 HOH HOH . E 5 HOH A 12 295 12 HOH HOH . E 5 HOH A 13 296 13 HOH HOH . E 5 HOH A 14 297 14 HOH HOH . E 5 HOH A 15 298 15 HOH HOH . E 5 HOH A 16 299 16 HOH HOH . E 5 HOH A 17 300 17 HOH HOH . E 5 HOH A 18 301 18 HOH HOH . E 5 HOH A 19 302 19 HOH HOH . E 5 HOH A 20 303 20 HOH HOH . E 5 HOH A 21 304 21 HOH HOH . E 5 HOH A 22 305 22 HOH HOH . E 5 HOH A 23 306 23 HOH HOH . E 5 HOH A 24 307 24 HOH HOH . E 5 HOH A 25 308 25 HOH HOH . E 5 HOH A 26 309 26 HOH HOH . E 5 HOH A 27 310 27 HOH HOH . E 5 HOH A 28 311 28 HOH HOH . E 5 HOH A 29 312 29 HOH HOH . E 5 HOH A 30 313 30 HOH HOH . E 5 HOH A 31 314 31 HOH HOH . E 5 HOH A 32 315 32 HOH HOH . E 5 HOH A 33 316 33 HOH HOH . E 5 HOH A 34 317 34 HOH HOH . E 5 HOH A 35 318 35 HOH HOH . E 5 HOH A 36 319 36 HOH HOH . E 5 HOH A 37 320 37 HOH HOH . E 5 HOH A 38 321 38 HOH HOH . E 5 HOH A 39 322 39 HOH HOH . E 5 HOH A 40 323 40 HOH HOH . E 5 HOH A 41 324 41 HOH HOH . E 5 HOH A 42 325 42 HOH HOH . E 5 HOH A 43 326 43 HOH HOH . E 5 HOH A 44 327 44 HOH HOH . E 5 HOH A 45 328 45 HOH HOH . E 5 HOH A 46 329 46 HOH HOH . E 5 HOH A 47 330 47 HOH HOH . E 5 HOH A 48 331 48 HOH HOH . E 5 HOH A 49 332 49 HOH HOH . E 5 HOH A 50 333 50 HOH HOH . E 5 HOH A 51 334 51 HOH HOH . E 5 HOH A 52 335 52 HOH HOH . E 5 HOH A 53 336 53 HOH HOH . E 5 HOH A 54 337 54 HOH HOH . E 5 HOH A 55 338 55 HOH HOH . E 5 HOH A 56 339 56 HOH HOH . E 5 HOH A 57 340 57 HOH HOH . E 5 HOH A 58 341 58 HOH HOH . E 5 HOH A 59 342 59 HOH HOH . E 5 HOH A 60 343 60 HOH HOH . E 5 HOH A 61 344 61 HOH HOH . E 5 HOH A 62 345 62 HOH HOH . E 5 HOH A 63 346 63 HOH HOH . E 5 HOH A 64 347 64 HOH HOH . E 5 HOH A 65 348 65 HOH HOH . E 5 HOH A 66 349 66 HOH HOH . E 5 HOH A 67 350 67 HOH HOH . E 5 HOH A 68 351 68 HOH HOH . E 5 HOH A 69 352 69 HOH HOH . E 5 HOH A 70 353 70 HOH HOH . E 5 HOH A 71 354 71 HOH HOH . E 5 HOH A 72 355 72 HOH HOH . E 5 HOH A 73 356 73 HOH HOH . E 5 HOH A 74 357 74 HOH HOH . E 5 HOH A 75 358 75 HOH HOH . E 5 HOH A 76 359 76 HOH HOH . E 5 HOH A 77 360 77 HOH HOH . E 5 HOH A 78 361 78 HOH HOH . E 5 HOH A 79 362 79 HOH HOH . E 5 HOH A 80 363 80 HOH HOH . E 5 HOH A 81 364 81 HOH HOH . E 5 HOH A 82 365 82 HOH HOH . E 5 HOH A 83 366 83 HOH HOH . E 5 HOH A 84 367 84 HOH HOH . E 5 HOH A 85 368 85 HOH HOH . E 5 HOH A 86 369 86 HOH HOH . E 5 HOH A 87 370 87 HOH HOH . E 5 HOH A 88 371 88 HOH HOH . E 5 HOH A 89 372 89 HOH HOH . E 5 HOH A 90 373 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA1 MBD . . . D 4 3.043 -2.503 18.777 0.85 36.19 ? CA1 MBD 283 A 1 HETATM 2 O OA1 MBD . . . D 4 3.484 -3.121 17.662 0.85 36.51 ? OA1 MBD 283 A 1 HETATM 3 C CA2 MBD . . . D 4 3.735 -1.272 19.085 0.85 36.18 ? CA2 MBD 283 A 1 HETATM 4 O OA2 MBD . . . D 4 4.743 -0.915 18.237 0.85 37.4 ? OA2 MBD 283 A 1 HETATM 5 C CA3 MBD . . . D 4 3.301 -0.522 20.281 0.85 35.3 ? CA3 MBD 283 A 1 HETATM 6 C CB3 MBD . . . D 4 3.986 0.747 20.63 0.85 39.74 ? CB3 MBD 283 A 1 HETATM 7 C CA4 MBD . . . D 4 2.251 -0.988 21.052 0.85 37.46 ? CA4 MBD 283 A 1 HETATM 8 C CA5 MBD . . . D 4 1.591 -2.181 20.703 0.85 37.48 ? CA5 MBD 283 A 1 HETATM 9 C CA6 MBD . . . D 4 1.987 -2.931 19.583 0.85 37.5 ? CA6 MBD 283 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 9 #